{"id":24954,"date":"2024-01-17T17:01:59","date_gmt":"2024-01-17T09:01:59","guid":{"rendered":"http:\/\/www.biocloudservice.com\/wordpress\/?p=24954"},"modified":"2024-01-17T17:02:01","modified_gmt":"2024-01-17T09:02:01","slug":"%e4%ba%94%e5%88%86%e9%92%9f%e5%b8%a6%e4%bd%a0%e5%bf%ab%e9%80%9f%e4%b8%8a%e6%89%8b%e5%9f%ba%e5%9b%a0%e5%8a%9f%e8%83%bd%e6%b3%a8%e9%87%8a","status":"publish","type":"post","link":"http:\/\/www.biocloudservice.com\/wordpress\/?p=24954","title":{"rendered":"\u4e94\u5206\u949f\u5e26\u4f60\u5feb\u901f\u4e0a\u624b\u57fa\u56e0\u529f\u80fd\u6ce8\u91ca"},"content":{"rendered":"

<\/a>\u5728\u8fdb\u884c\u57fa\u56e0\u7684\u5dee\u5f02\u5206\u6790\u4e4b\u540e\uff0c\u6211\u4eec\u9700\u8981\u5bf9\u57fa\u56e0\u7684\u529f\u80fd\u8fdb\u884c\u6ce8\u91ca\u3002\u57fa\u56e0\u529f\u80fd\u6ce8\u91ca\u7684\u76ee\u7684\u662f\u901a\u8fc7\u5206\u6790\u57fa\u56e0\u7684\u5e8f\u5217\u548c\u7ed3\u6784\u4ee5\u53ca\u5df2\u77e5\u7684\u529f\u80fd\u548c\u7279\u5f81\u4fe1\u606f\uff0c\u6765\u9884\u6d4b\u548c\u89e3\u91ca\u57fa\u56e0\u7684\u529f\u80fd\u548c\u751f\u7269\u5b66\u4f5c\u7528\u3002\u529f\u80fd\u6ce8\u91ca\u7684\u7ed3\u679c\u53ef\u4ee5\u63d0\u4f9b\u5173\u4e8e\u57fa\u56e0\u7684\u529f\u80fd\u3001\u53c2\u4e0e\u7684\u751f\u7269\u8fc7\u7a0b\u3001\u7ec6\u80de\u5b9a\u4f4d\u3001\u8c03\u63a7\u673a\u5236\u7b49\u65b9\u9762\u7684\u4fe1\u606f\uff0c\u4ece\u800c\u5e2e\u52a9\u7814\u7a76\u8005\u7406\u89e3\u57fa\u56e0\u5728\u751f\u7269\u4f53\u4e2d\u7684\u529f\u80fd\u548c\u76f8\u5173\u7684\u751f\u7406\u8fc7\u7a0b\u3002<\/p>\n

\u800c\u5bf9\u4e8e\u57fa\u56e0\u529f\u80fd\u7684\u6ce8\u91ca\uff0c\u5c0f\u679c\u60f3\u8981\u5bfb\u6c42\u4e00\u79cd\u9ad8\u6548\u7b80\u4fbf\u7684\u65b9\u5f0f\uff0c\u7ecf\u8fc7\u641c\u67e5\u8d44\u6599\u53d1\u73b0\uff0c\u6709\u4e00\u79cd\u65e0\u9700\u4ee3\u7801\u7684\u5728\u7ebf\u57fa\u56e0\u529f\u80fd\u6ce8\u91ca\u7f51\u7ad9\uff0c\u5b83\u5c31\u662feggnog-mapper\u3002\u4e0b\u9762\u5c31\u548c\u5c0f\u679c\u6765\u5b66\u4e60\u4e00\u4e0b\u600e\u4e48\u4f7f\u7528\u5427\uff01<\/p>\n

\u4e00\u3001eggNOG-Mapper\u4ecb\u7ecd<\/h2>\n

eggNOG-Mapper\u662f\u4e00\u79cd\u5e38\u7528\u7684\u57fa\u56e0\u529f\u80fd\u6ce8\u91ca\u5de5\u5177\uff0c\u5b83\u57fa\u4e8eeggNOG\u6570\u636e\u5e93\u548cOrthoDB\u6570\u636e\u5e93\uff0c\u5e76\u5229\u7528\u8fd9\u4e9b\u6570\u636e\u5e93\u4e2d\u7684\u6570\u636e\u548c\u6bd4\u5bf9\u7b97\u6cd5\u6765\u63a8\u65ad\u57fa\u56e0\u7684\u529f\u80fd\u3002<\/p>\n

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\u800cOrthoDB\u6570\u636e\u5e93\u5219\u662f\u53e6\u4e00\u4e2a\u7528\u4e8e\u57fa\u56e0\u529f\u80fd\u6ce8\u91ca\u7684\u6570\u636e\u5e93\uff0c\u5b83\u4e3b\u8981\u7528\u4e8e\u8bc6\u522b\u548c\u6ce8\u91ca\u6b63\u4ea4\u57fa\u56e0\u7ec4\u3002<\/p>\n

\u4e8c\u3001\u5982\u4f55\u4f7f\u7528eggNOG-Mapper\uff1f<\/h2>\n

\u9996\u5148\u6211\u4eec\u9700\u8981\u6253\u5f00eggNOG-mapper\u7684\u4e3b\u9875\uff0c\u5373http:\/\/eggnog-mapper.embl.de\/<\/a>\uff0c\u5982\u56fe\u6240\u793a\u4e3a\u8be5\u7f51\u9875\u7684\u4fe1\u606f\u3002<\/p>\n

<\/a> <\/p>\n

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<\/a> <\/p>\n

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<\/a> <\/p>\n

<\/a> <\/p>\n

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<\/a> <\/p>\n

\u5982\u679c\u5df2\u7ecf\u5b8c\u6210\u6bd4\u5bf9\uff0c\u5e76\u751f\u6210\u6ce8\u91ca\u6587\u4ef6\uff0c\u8fd9\u65f6\u5019\u4f1a\u6536\u5230\u4e00\u5c01\u90ae\u4ef6\uff0c\u4e0a\u9762\u4f1a\u6ce8\u660e”finished”\u3001”with status finished”\u7b49\u5b57\u6837\u3002\u6253\u5f00\u90ae\u4ef6\u3002\u5e76\u4e14\u70b9\u51fb\u4e0a\u97622\u4e2d\u7684Access your job files here\u6309\u94ae\uff0c\u53ef\u4ee5\u5f97\u5230out.emapper.annotations\u6587\u4ef6\u5e76\u4e0b\u8f7d\u5c31\u884c\u4e86<\/p>\n

<\/a> <\/p>\n

<\/a> <\/p>\n

\u63a5\u4e0b\u6765\uff0c\u6253\u5f00\u6211\u4eec\u4e0b\u8f7d\u7684out.emapper.annotations\u6587\u4ef6\uff0c\u5c31\u53ef\u4ee5\u5f97\u5230\u76f8\u5e94\u7684\u57fa\u56e0\u529f\u80fd\u6ce8\u91ca\u4fe1\u606f\u4e86\u5566\uff01<\/p>\n

<\/a> <\/p>\n

\u5176\u4e2d\u4ee5\u4e0b\u662fout.emapper.annotations\u6587\u4ef6\u6bcf\u4e2a\u5217\u7684\u8bf4\u660e\uff1a<\/p>\n

1\uff09query\uff1a\u8f93\u5165\u5e8f\u5217\u7684\u540d\u79f0\u3002<\/p>\n

2\uff09seed_ortholog\uff1a\u5339\u914d\u5230\u7684\u79cd\u5b50\u5e8f\u5217\u7684\u6ce8\u91ca\u4fe1\u606f\u3002<\/p>\n

3\uff09evalue\uff1a\u8f93\u5165\u5e8f\u5217\u4e0e\u79cd\u5b50\u5e8f\u5217\u7684\u5339\u914dE-value\u9608\u503c\u3002<\/p>\n

4\uff09score\uff1a\u8f93\u5165\u5e8f\u5217\u4e0e\u79cd\u5b50\u5e8f\u5217\u7684\u5339\u914d\u5f97\u5206\u3002<\/p>\n

5\uff09eggNOG_OGs\uff1a\u4e0e\u8f93\u5165\u5e8f\u5217\u5339\u914d\u7684EggNOG orthologous groups\uff08OGs\uff09\u3002<\/p>\n

6\uff09max_annot_lvl\uff1a\u5728\u8f93\u5165\u5e8f\u5217\u7684\u6ce8\u91ca\u4e2d\u63d0\u4f9b\u7684\u6700\u5927\u6ce8\u91ca\u7ea7\u522b\u3002<\/p>\n

7\uff09COG_category\uff1aClusters of Orthologous Groups\uff08COG\uff09\u5206\u7c7b\u3002<\/p>\n

8\uff09Description\uff1a\u8be5\u5e8f\u5217\u7684\u529f\u80fd\u63cf\u8ff0\u3002<\/p>\n

9\uff09Preferred_name\uff1a\u8be5\u5e8f\u5217\u7684\u9996\u9009\u6216\u6807\u51c6\u540d\u79f0\u3002<\/p>\n

10\uff09GOs\uff1aGene Ontology\uff08GO\uff09\u6ce8\u91ca\u4fe1\u606f\u3002<\/p>\n

11\uff09EC\uff1a\u5bf9\u5e94\u7684\u9176\u5b66\u6ce8\u91ca\u53f7\u3002<\/p>\n

12\uff09KEGG_ko\uff1a\u5bf9\u5e94\u7684KEGG Orthology\uff08KO\uff09\u53f7\u3002<\/p>\n

13\uff09KEGG_Pathway\uff1aKEGG\u901a\u8def\u4fe1\u606f\u3002<\/p>\n

14\uff09KEGG_Module\uff1aKEGG\u6a21\u5757\u4fe1\u606f\u3002<\/p>\n

15\uff09KEGG_Reaction\uff1aKEGG\u53cd\u5e94\u4fe1\u606f\u3002<\/p>\n

16\uff09KEGG_rclass\uff1aKEGG\u53cd\u5e94\u5206\u7c7b\u4fe1\u606f\u3002<\/p>\n

17\uff09BRITE\uff1aBRITE\u529f\u80fd\u5c42\u6b21\u7ed3\u6784\u6ce8\u91ca\u3002<\/p>\n

18\uff09KEGG_TC\uff1aKEGG\u4f20\u8f93\u7269\u8d28\u5206\u7c7b\u4fe1\u606f\u3002<\/p>\n

19\uff09CAZy\uff1a\u78b3\u6c34\u5316\u5408\u7269\u6d3b\u6027\u9176\u5bb6\u65cf\u6ce8\u91ca\u4fe1\u606f\u3002<\/p>\n

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21\uff09PFAMs\uff1a\u5e8f\u5217\u4e2d\u4e0ePFAM\u6570\u636e\u5e93\u5339\u914d\u7684\u4fe1\u606f\u3002<\/p>\n

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