{"id":25159,"date":"2024-01-18T16:55:28","date_gmt":"2024-01-18T08:55:28","guid":{"rendered":"http:\/\/www.biocloudservice.com\/wordpress\/?p=25159"},"modified":"2024-01-18T16:55:29","modified_gmt":"2024-01-18T08:55:29","slug":"%e4%b8%80%e5%88%86%e9%92%9f%e6%95%99%e4%bd%a0%e7%94%a8expss%e5%bf%ab%e9%80%9f%e5%a4%84%e7%90%86%e6%95%b0%e6%8d%ae%e5%b9%b6%e7%94%9f%e6%88%90%e6%8a%a5%e5%91%8a","status":"publish","type":"post","link":"http:\/\/www.biocloudservice.com\/wordpress\/?p=25159","title":{"rendered":"\u4e00\u5206\u949f\u6559\u4f60\u7528expss\u5feb\u901f\u5904\u7406\u6570\u636e\u5e76\u751f\u6210\u62a5\u544a"},"content":{"rendered":"

R\u8bed\u8a00\u5305expss\u662f\u4e00\u4e2a\u7528\u4e8e\u7edf\u8ba1\u5206\u6790\u548c\u6570\u636e\u5904\u7406\u7684\u6269\u5c55\u5305\u3002\u5b83\u63d0\u4f9b\u4e86\u4e00\u5957\u529f\u80fd\u5f3a\u5927\u7684\u5de5\u5177\uff0c\u7528\u4e8e\u5904\u7406\u548c\u8f6c\u6362\u6570\u636e\u3001\u6267\u884c\u590d\u6742\u7684\u7edf\u8ba1\u5206\u6790\u548c\u751f\u6210\u9ad8\u8d28\u91cf\u7684\u62a5\u544a\u3002<\/p>\n

expss\u8ba1\u7b97\u548c\u663e\u793a\u8868\u683c\uff0c\u652f\u6301 “SPSS “\u98ce\u683c\u7684\u6807\u7b7e\u3001\u591a\u4e2a\/\u5d4c\u5957\u6807\u8bed\u3001\u6743\u91cd\u3001\u591a\u53cd\u5e94\u53d8\u91cf\u548c\u663e\u8457\u6027\u68c0\u9a8c\u3002\u5728 “knitr”\u3001R notebooks\u3001”Shiny “\u548c “Jupyter “\u4e2d\uff0c\u6709\u4e00\u4e9b\u8bbe\u65bd\u53ef\u4ee5\u5f88\u597d\u5730\u8f93\u51fa\u8868\u683c\u3002\u9002\u5f53\u7684\u6807\u8bb0\u53d8\u91cf\u7684\u65b9\u6cd5\u4e3a\u57fa\u672c\u7684R\u51fd\u6570\u548c\u5176\u4ed6\u5305\u7684\u4e00\u4e9b\u51fd\u6570\u589e\u52a0\u4e86\u4ef7\u503c\u6807\u7b7e\u652f\u6301\u3002\u6b64\u5916\uff0c\u8be5\u8f6f\u4ef6\u5305\u8fd8\u4e3a\u8425\u9500\u7814\u7a76\/\u793e\u4f1a\u8c03\u67e5\u4e2d\u7684\u6570\u636e\u5904\u7406\u63d0\u4f9b\u4e86\u6709\u7528\u7684\u51fd\u6570–\u6765\u81ea’SPSS’\u7edf\u8ba1\u548c’Excel’\u7684\u6d41\u884c\u6570\u636e\u8f6c\u6362\u51fd\u6570\uff08’RECODE’\u3001’COUNT’\u3001’COUNTIF’\u3001’VLOOKUP’\uff0c\u7b49\u7b49\uff09\u3002\u5305\u7684\u76ee\u7684\u662f\u5e2e\u52a9\u4eba\u4eec\u5c06\u6570\u636e\u5904\u7406\u4ece’Excel’\/’SPSS’\u8f6c\u79fb\u5230R\u3002\u4f60\u53ef\u4ee5\u901a\u8fc7\u5728R\u63a7\u5236\u53f0\u4e2d\u8f93\u5165\u201d?function_name\u201d\u6765\u83b7\u5f97\u5173\u4e8e\u4efb\u4f55\u51fd\u6570\u7684\u5e2e\u52a9\u3002<\/p>\n

expss\u5305\u7684\u4e3b\u8981\u529f\u80fd\u5305\u62ec\uff1a<\/p>\n

1. \u6570\u636e\u5904\u7406\uff1aexpss\u5305\u63d0\u4f9b\u4e86\u4e00\u7cfb\u5217\u529f\u80fd\uff0c\u7528\u4e8e\u5bf9\u751f\u7269\u4fe1\u606f\u5b66\u6570\u636e\u8fdb\u884c\u5904\u7406\u548c\u8f6c\u6362\u3002\u5b83\u652f\u6301\u6570\u636e\u7684\u91cd\u7f16\u7801\u3001\u91cd\u547d\u540d\u3001\u6392\u5e8f\u548c\u8fc7\u6ee4\uff0c\u4f7f\u5f97\u6570\u636e\u7684\u9884\u5904\u7406\u53d8\u5f97\u7b80\u5355\u548c\u9ad8\u6548\u3002<\/p>\n

    \n
  1. \u7edf\u8ba1\u5206\u6790\uff1aexpss\u5305\u5185\u7f6e\u4e86\u4e00\u7cfb\u5217\u7edf\u8ba1\u5206\u6790\u51fd\u6570\uff0c\u53ef\u4ee5\u8fdb\u884c\u63cf\u8ff0\u6027\u7edf\u8ba1\u3001\u9891\u6570\u5206\u6790\u3001\u4ea4\u53c9\u8868\u5206\u6790\u7b49\u3002\u5b83\u63d0\u4f9b\u4e86\u7b80\u6d01\u7684\u8bed\u6cd5\u548c\u4e30\u5bcc\u7684\u9009\u9879\uff0c\u4f7f\u5f97\u7528\u6237\u53ef\u4ee5\u8f7b\u677e\u5730\u8fdb\u884c\u6570\u636e\u5206\u6790\uff0c\u5e76\u751f\u6210\u7edf\u8ba1\u6458\u8981\u548c\u62a5\u544a\u3002<\/li>\n
  2. \u6570\u636e\u900f\u89c6\u8868\uff1aexpss\u5305\u652f\u6301\u6570\u636e\u900f\u89c6\u8868\u7684\u521b\u5efa\u548c\u64cd\u4f5c\u3002\u901a\u8fc7\u7b80\u5355\u7684\u51fd\u6570\u8c03\u7528\uff0c\u7528\u6237\u53ef\u4ee5\u6839\u636e\u4e0d\u540c\u7684\u53d8\u91cf\u5bf9\u6570\u636e\u8fdb\u884c\u6c47\u603b\u3001\u5206\u7ec4\u548c\u8ba1\u7b97\uff0c\u4ee5\u83b7\u53d6\u5173\u952e\u7684\u7edf\u8ba1\u4fe1\u606f\u3002<\/li>\n
  3. \u6807\u7b7e\u548c\u6807\u7b7e\u503c\uff1aexpss\u5305\u63d0\u4f9b\u4e86\u6807\u7b7e\u548c\u6807\u7b7e\u503c\u7684\u529f\u80fd\uff0c\u7528\u4e8e\u5bf9\u6570\u636e\u8fdb\u884c\u6ce8\u91ca\u548c\u5206\u7c7b\u3002\u7528\u6237\u53ef\u4ee5\u4e3a\u6570\u636e\u96c6\u6dfb\u52a0\u6613\u4e8e\u7406\u89e3\u7684\u6807\u7b7e\uff0c\u4ece\u800c\u63d0\u9ad8\u6570\u636e\u7684\u53ef\u8bfb\u6027\u548c\u53ef\u89e3\u91ca\u6027\u3002<\/li>\n
  4. \u6570\u636e\u53ef\u89c6\u5316\uff1aexpss\u5305\u4e0e\u5176\u4ed6R\u8bed\u8a00\u7684\u53ef\u89c6\u5316\u5305\uff08\u5982ggplot2\uff09\u517c\u5bb9\uff0c\u5e76\u63d0\u4f9b\u4e86\u4e00\u4e9b\u4e13\u95e8\u7528\u4e8e\u53ef\u89c6\u5316\u7684\u51fd\u6570\u3002\u7528\u6237\u53ef\u4ee5\u5229\u7528\u8fd9\u4e9b\u51fd\u6570\u521b\u5efa\u9ad8\u8d28\u91cf\u7684\u56fe\u8868\u548c\u56fe\u5f62\uff0c\u7528\u4e8e\u5c55\u793a\u751f\u7269\u4fe1\u606f\u5b66\u6570\u636e\u7684\u5206\u5e03\u3001\u5173\u8054\u548c\u8d8b\u52bf\u3002<\/li>\n
  5. \u62a5\u544a\u751f\u6210\uff1aexpss\u5305\u63d0\u4f9b\u4e86\u7b80\u4fbf\u7684\u51fd\u6570\u548c\u65b9\u6cd5\uff0c\u7528\u4e8e\u751f\u6210\u62a5\u544a\u548c\u6587\u6863\u3002\u7528\u6237\u53ef\u4ee5\u6839\u636e\u9700\u8981\u9009\u62e9\u4e0d\u540c\u7684\u8f93\u51fa\u683c\u5f0f\uff0c\u5982HTML\u3001PDF\u6216Word\uff0c\u4ee5\u4fbf\u5c06\u5206\u6790\u7ed3\u679c\u548c\u53ef\u89c6\u5316\u6548\u679c\u6574\u5408\u5230\u6700\u7ec8\u7684\u62a5\u544a\u4e2d\u3002<\/li>\n<\/ol>\n

    expss\u5305\u5177\u6709\u6613\u4e8e\u5b66\u4e60\u548c\u4f7f\u7528\u7684\u8bed\u6cd5\uff0c\u9002\u5408\u751f\u7269\u4fe1\u606f\u5b66\u7814\u7a76\u4eba\u5458\u8fdb\u884c\u6570\u636e\u5904\u7406\u548c\u7edf\u8ba1\u5206\u6790\u3002\u5b83\u63d0\u4f9b\u4e86\u4e30\u5bcc\u7684\u529f\u80fd\u548c\u7075\u6d3b\u7684\u9009\u9879\uff0c\u53ef\u4ee5\u5e2e\u52a9\u7528\u6237\u5feb\u901f\u63a2\u7d22\u548c\u7406\u89e3\u751f\u7269\u4fe1\u606f\u5b66\u6570\u636e\uff0c\u5e76\u751f\u6210\u9ad8\u8d28\u91cf\u7684\u5206\u6790\u62a5\u544a\u3002\u901a\u8fc7\u5229\u7528expss\u5305\uff0c\u751f\u7269\u4fe1\u606f\u5b66\u7814\u7a76\u4eba\u5458\u53ef\u4ee5\u66f4\u52a0\u9ad8\u6548\u5730\u5206\u6790\u6570\u636e\u3001\u53d1\u73b0\u6a21\u5f0f\u548c\u8d8b\u52bf\uff0c\u5e76\u5c06\u7ed3\u679c\u53ef\u89c6\u5316\u548c\u5448\u73b0\u7ed9\u5176\u4ed6\u4eba\u3002<\/p>\n

    \u8981\u4f7f\u7528expss\u5305\uff0c\u53ef\u4ee5\u5728R\u4e2d\u4f7f\u7528\u4ee5\u4e0b\u547d\u4ee4\u8fdb\u884c\u5b89\u88c5\u548c\u52a0\u8f7d\uff1a<\/p>\n

    > install.packages(“expss”) #\u5b89\u88c5expss\u8bed\u8a00\u5305<\/p>\n

    > library(expss) #\u52a0\u8f7d\u8bed\u8a00\u5305<\/p>\n

    \u793a\u4f8b\uff1a<\/p>\n

    \u5047\u8bbe\u6211\u4eec\u6709\u4e00\u4e2a\u751f\u7269\u4fe1\u606f\u5b66\u7814\u7a76\u7684\u6570\u636e\u96c6\uff0c\u5176\u4e2d\u5305\u542b\u4e86\u4e00\u7ec4\u57fa\u56e0\u8868\u8fbe\u91cf\u6570\u636e\uff0c\u4ee5\u53ca\u4e0e\u6bcf\u4e2a\u57fa\u56e0\u76f8\u5173\u7684\u8c03\u63a7\u56e0\u5b50\u7684\u6ce8\u91ca\u4fe1\u606f\u3002\u6211\u4eec\u53ef\u4ee5\u4f7f\u7528expss\u5305\u6765\u5bf9\u8fd9\u4e2a\u6570\u636e\u96c6\u8fdb\u884c\u5206\u6790\u548c\u62a5\u544a\u751f\u6210\u3002<\/p>\n

    > gene_expression <- c(10, 15, 8, 12, 9)<\/p>\n

    > regulatory_factors <- c(“Factor A”, “Factor B”, “Factor A”, “Factor C”, “Factor B”)<\/p>\n

    > data <- data.frame(Gene_Expression = gene_expression, Regulatory_Factor = regulatory_factors)<\/p>\n

    > library(expss)<\/p>\n

    > library(knitr)<\/p>\n

    > freq_table <- cro_cpct(data$Regulatory_Factor, data$Gene_Expression)<\/p>\n

    > report <- ”<\/p>\n

    # \u57fa\u56e0\u8868\u8fbe\u91cf\u548c\u8c03\u63a7\u56e0\u5b50\u5206\u6790\u62a5\u544a<\/p>\n

    ## \u57fa\u56e0\u8868\u8fbe\u91cf\u6570\u636e<\/p>\n

    ### \u9891\u6570\u8868<\/p>\n

    `r print(freq_table, method=’render’)`<\/p>\n

    ### \u7edf\u8ba1\u4fe1\u606f<\/p>\n

    – \u5e73\u5747\u57fa\u56e0\u8868\u8fbe\u91cf: `r mean(data$Gene_Expression)`<\/p>\n

    – \u6700\u5927\u57fa\u56e0\u8868\u8fbe\u91cf: `r max(data$Gene_Expression)`<\/p>\n

    – \u6700\u5c0f\u57fa\u56e0\u8868\u8fbe\u91cf: `r min(data$Gene_Expression)`<\/p>\n

    ”<\/p>\n

    # \u5bfc\u51fa\u4e3aHTML\u62a5\u544a<\/p>\n

    > html_report <- knitr::knit2html(text = report)<\/p>\n

    \"Screenshot<\/p>\n

    > cat(html_report)<\/p>\n

    > writeLines(html_report, “gene_expression_report.html”)<\/p>\n

    \u4ee5\u4e0a\u4ee3\u7801\u5c06\u751f\u6210\u4e00\u4e2aHTML\u683c\u5f0f\u7684\u62a5\u544a\uff0c\u5176\u4e2d\u5305\u62ec\u4ea4\u53c9\u9891\u6570\u8868\u548c\u57fa\u56e0\u8868\u8fbe\u91cf\u7684\u7edf\u8ba1\u4fe1\u606f\u3002<\/p>\n

    \"unnamed-chunk-24-1\"<\/p>\n

    \u901a\u8fc7\u4f7f\u7528expss\u5305\uff0c\u6211\u4eec\u53ef\u4ee5\u8f7b\u677e\u5730\u5bf9\u751f\u7269\u4fe1\u606f\u5b66\u6570\u636e\u8fdb\u884c\u5206\u6790\u548c\u62a5\u544a\u751f\u6210\u3002expss\u63d0\u4f9b\u4e86\u65b9\u4fbf\u7684\u51fd\u6570\u548c\u5de5\u5177\uff0c\u4f7f\u5f97\u6570\u636e\u5904\u7406\u3001\u4ea4\u53c9\u8868\u5206\u6790\u548c\u62a5\u544a\u751f\u6210\u53d8\u5f97\u7b80\u5355\u800c\u76f4\u89c2\u3002<\/p>\n

    \"screen_xlsx1\"<\/p>\n

    \"screen_xlsx2\"<\/p>\n

    \"Cq8a3\"<\/p>\n

    \u4ee5\u4e0a\u5c31\u662f\u5bf9R\u8bed\u8a00\u5305expss\u7684\u7b80\u5355\u4ecb\u7ecd\u5566\uff0cexpss\u5305\u4e3aR\u7528\u6237\u63d0\u4f9b\u4e86\u4e00\u4e2a\u65b9\u4fbf\u4e14\u529f\u80fd\u4e30\u5bcc\u7684\u5de5\u5177\u96c6\uff0c\u7528\u4e8e\u6570\u636e\u5904\u7406\u3001\u7edf\u8ba1\u5206\u6790\u548c\u62a5\u544a\u751f\u6210\u3002\u5b83\u7b80\u5316\u4e86\u590d\u6742\u4efb\u52a1\u7684\u6267\u884c\u8fc7\u7a0b\uff0c\u63d0\u9ad8\u4e86\u6570\u636e\u5206\u6790\u7684\u6548\u7387\u548c\u8d28\u91cf\u3002\u65e0\u8bba\u662f\u6570\u636e\u6e05\u6d17\u3001\u4ea4\u53c9\u8868\u5206\u6790\u8fd8\u662f\u591a\u53d8\u91cf\u5206\u6790\uff0cexpss\u90fd\u662f\u4e00\u4e2a\u503c\u5f97\u63a2\u7d22\u7684\u5b9e\u7528\u5de5\u5177\u3002<\/p>\n

    \u5c0f\u4f19\u4f34\u4eec\uff0c\u4eca\u5929\u6709\u6ca1\u6709\u5b66\u5230\u65b0\u77e5\u8bc6\u5462\uff0c\u60f3\u8981\u7ee7\u7eed\u4e86\u89e3R\u8bed\u8a00\u5185\u5bb9\u53ef\u4ee5\u6301\u7eed\u5173\u6ce8\u5c0f\u679c\u54e6\uff5e\uff5e\u6216\u8005\u4e5f\u53ef\u4ee5\u5173\u6ce8\u6211\u4eec\u7684\u5b98\u7f51\u4e5f\u4f1a\u6301\u7eed\u66f4\u65b0\u7684\u54e6\uff5e http:\/\/www.biocloudservice.com\/home.html<\/a><\/p>\n

    References:<\/p>\n

      \n
    1. https:\/\/gdemin.github.io\/expss\/<\/a><\/li>\n
    2. https:\/\/stackoverflow.com\/questions\/53173375\/r-expss-package-format-numbers-by-statistic-apply-different-format-to-alterna<\/a><\/li>\n<\/ol>\n","protected":false},"excerpt":{"rendered":"

      R\u8bed\u8a00\u5305expss\u662f\u4e00\u4e2a\u7528\u4e8e\u7edf\u8ba1\u5206\u6790\u548c\u6570\u636e\u5904\u7406\u7684\u6269\u5c55\u5305\u3002\u5b83\u63d0\u4f9b\u4e86\u4e00\u5957\u529f\u80fd\u5f3a\u5927\u7684\u5de5\u5177\uff0c\u7528\u4e8e\u5904\u7406\u548c\u8f6c\u6362\u6570\u636e\u3001\u6267\u884c\u590d […]<\/p>\n","protected":false},"author":1,"featured_media":0,"comment_status":"closed","ping_status":"closed","sticky":false,"template":"","format":"standard","meta":{"jetpack_post_was_ever_published":false,"_jetpack_newsletter_access":""},"categories":[1],"tags":[],"jetpack_featured_media_url":"","_links":{"self":[{"href":"http:\/\/www.biocloudservice.com\/wordpress\/index.php?rest_route=\/wp\/v2\/posts\/25159"}],"collection":[{"href":"http:\/\/www.biocloudservice.com\/wordpress\/index.php?rest_route=\/wp\/v2\/posts"}],"about":[{"href":"http:\/\/www.biocloudservice.com\/wordpress\/index.php?rest_route=\/wp\/v2\/types\/post"}],"author":[{"embeddable":true,"href":"http:\/\/www.biocloudservice.com\/wordpress\/index.php?rest_route=\/wp\/v2\/users\/1"}],"replies":[{"embeddable":true,"href":"http:\/\/www.biocloudservice.com\/wordpress\/index.php?rest_route=%2Fwp%2Fv2%2Fcomments&post=25159"}],"version-history":[{"count":1,"href":"http:\/\/www.biocloudservice.com\/wordpress\/index.php?rest_route=\/wp\/v2\/posts\/25159\/revisions"}],"predecessor-version":[{"id":25165,"href":"http:\/\/www.biocloudservice.com\/wordpress\/index.php?rest_route=\/wp\/v2\/posts\/25159\/revisions\/25165"}],"wp:attachment":[{"href":"http:\/\/www.biocloudservice.com\/wordpress\/index.php?rest_route=%2Fwp%2Fv2%2Fmedia&parent=25159"}],"wp:term":[{"taxonomy":"category","embeddable":true,"href":"http:\/\/www.biocloudservice.com\/wordpress\/index.php?rest_route=%2Fwp%2Fv2%2Fcategories&post=25159"},{"taxonomy":"post_tag","embeddable":true,"href":"http:\/\/www.biocloudservice.com\/wordpress\/index.php?rest_route=%2Fwp%2Fv2%2Ftags&post=25159"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}