{"id":25234,"date":"2024-01-19T16:49:11","date_gmt":"2024-01-19T08:49:11","guid":{"rendered":"http:\/\/www.biocloudservice.com\/wordpress\/?p=25234"},"modified":"2024-01-19T16:49:12","modified_gmt":"2024-01-19T08:49:12","slug":"%e4%ba%94%e5%88%86%e9%92%9f%e5%ad%a6%e4%bc%9a%e7%94%a8r%e7%bb%98%e5%88%b6%e6%a3%92%e6%a3%92%e7%b3%96%e5%9b%be","status":"publish","type":"post","link":"http:\/\/www.biocloudservice.com\/wordpress\/?p=25234","title":{"rendered":"\u4e94\u5206\u949f\u5b66\u4f1a\u7528R\u7ed8\u5236\u201c\u68d2\u68d2\u7cd6\u201d\u56fe"},"content":{"rendered":"<p>\u201c\u68d2\u68d2\u7cd6\u201d\u6211\u4eec\u5927\u5bb6\u90fd\u5403\u8fc7\uff0c\u5c31\u662f\u4e00\u4e2a\u5927\u5927\u7684\u539f\u70b9\u548c\u4e00\u6839\u5c0f\u68cd\u7ec4\u6210\u3002\u90a3\u5728\u8bba\u6587\u4e2d\uff0c\u6211\u4eec\u4e5f\u5e38\u5e38\u62ff\u8fd9\u79cd\u7b80\u5355\u597d\u770b\u7684\u56fe\u5f62\u6765\u8868\u793a\u4e00\u4e9b\u751f\u7269\u5b66\u7684\u610f\u4e49\u3002<\/p>\n<p>\u4ece\u751f\u4fe1\u89d2\u5ea6\u4e0a\u6765\u770b\uff0c\u68d2\u68d2\u7cd6\u56fe\u5728ggplot\u4e2d\u53ef\u4ee5\u901a\u8fc7\u4f7f\u7528geom_point()\u51fd\u6570\u7ed8\u5236\u7cd6\u7684\u90e8\u5206\uff0c\u4ee5\u53ca\u4f7f\u7528geom_segment()\u51fd\u6570\u7ed8\u5236\u68d2\u68d2\u7684\u90e8\u5206\uff0c\u6765\u5b9e\u73b0\u67f1\u72b6\u56fe\u548c\u6563\u70b9\u56fe\u7684\u6548\u679c\u7ec4\u5408\u800c\u6210\u7684\u56fe\u5f62\u3002<\/p>\n<p>\u5c0f\u679c\u770b\u5230\u6587\u7ae0\u4e2d\u597d\u770b\u7684\u6c14\u6ce1\u56fe\uff0c\u5fcd\u4e0d\u4f4f\u60f3\u590d\u523b\u51fa\u6765\uff0c\u4e0b\u9762\u8ddf\u968f\u5c0f\u679c\u7684\u601d\u8def\u6765\u7ed8\u5236\u51fa\u4f60\u559c\u6b22\u7684\u6c14\u6ce1\u56fe\u53ed\uff5e<\/p>\n<h2>\u57fa\u7840\u68d2\u68d2\u7cd6<\/h2>\n<p># \u5b89\u88c5\u5e76\u52a0\u8f7d\u5305<\/p>\n<p>install.packages(&#8220;ggplot2&#8221;)<\/p>\n<p>library(ggplot2)<\/p>\n<p># \u521b\u9020\u6570\u503c\u53d8\u91cf\u6570\u636e<\/p>\n<p>data1 &lt;- data.frame(x=seq(1,25), y=abs(rnorm(25)))<\/p>\n<p># \u4f5c\u56fe<\/p>\n<p>p1 &lt;- ggplot(data1, aes(x=x, y=y)) +<\/p>\n<p>geom_point() +<\/p>\n<p>geom_segment( aes(x=x, xend=x, y=0, yend=y))<\/p>\n<p><img decoding=\"async\" loading=\"lazy\" width=\"640\" height=\"533\" class=\"wp-image-25235\" src=\"https:\/\/i0.wp.com\/www.biocloudservice.com\/wordpress\/wp-content\/uploads\/2024\/01\/2023-07-11-22-27-13.png?resize=640%2C533\" alt=\"\u622a\u5c4f2023-07-11 22.27.13\" srcset=\"https:\/\/i0.wp.com\/www.biocloudservice.com\/wordpress\/wp-content\/uploads\/2024\/01\/2023-07-11-22-27-13.png?w=810 810w, https:\/\/i0.wp.com\/www.biocloudservice.com\/wordpress\/wp-content\/uploads\/2024\/01\/2023-07-11-22-27-13.png?resize=300%2C250 300w, https:\/\/i0.wp.com\/www.biocloudservice.com\/wordpress\/wp-content\/uploads\/2024\/01\/2023-07-11-22-27-13.png?resize=768%2C640 768w, https:\/\/i0.wp.com\/www.biocloudservice.com\/wordpress\/wp-content\/uploads\/2024\/01\/2023-07-11-22-27-13.png?resize=600%2C500 600w\" sizes=\"(max-width: 640px) 100vw, 640px\" data-recalc-dims=\"1\" \/><\/p>\n<p>\u6309\u7167\u5c0f\u679c\u524d\u6587\u7684\u601d\u8def\u5c31\u662fgeom_point() + geom_segment()\u51fd\u6570\u53ef\u4ee5\u5b9e\u73b0\u68d2\u68d2\u7cd6\u7684\u7ed8\u5236\uff0c\u4f46\u662f\u76ee\u524d\u770b\u8fd8\u662f\u4e0d\u592a\u7f8e\u89c2\u3002\u6211\u4eec\u9700\u8981\u8fdb\u4e00\u6b65\u5b66\u4e60\uff0c\u6765\u628a\u56fe\u505a\u7684\u7f8e\u89c2\u3002<\/p>\n<h2>\u81ea\u5b9a\u4e49\u70b9\u548c\u7ebf<\/h2>\n<p>data1 &lt;- data.frame(x=c(paste(&#8220;pathway&#8221;,1:9)), y=abs(rnorm(9)))<\/p>\n<p>ggplot(data1, aes(x=x, y=y)) +<\/p>\n<p>geom_segment( aes(x=x, xend=x, y=0, yend=y),size=1, color=&#8221;grey&#8221;, linetype=&#8221;longdash&#8221; )+<\/p>\n<p>geom_point( size=3, color=&#8221;black&#8221;, fill=alpha(&#8220;red&#8221;, 0.3), alpha=0.7, shape=21, stroke=2)#\u8c03\u8282\u4e00\u4e9b\u70b9\u7684\u6027\u8d28\u7684\u53c2\u6570+<\/p>\n<p>theme_light() +<\/p>\n<p>#coord_flip() + #\u63a7\u5236\u56fe\u5f62\u662f\u5426\u6c34\u5e73\u653e\u7f6e\uff0c\u8fd9\u91cc\u5c0f\u679c\u63d0\u793a\uff0c\u53ef\u4ee5\u5c1d\u8bd5\u5f97\u5230\u66f4\u597d\u7684\u6548\u679c\u54e6\uff5e<\/p>\n<p>theme(<\/p>\n<p>panel.grid.major.x = element_blank(),<\/p>\n<p>panel.border = element_blank(),<\/p>\n<p>axis.ticks.x = element_blank()<\/p>\n<p>) +<\/p>\n<p>xlab(&#8220;Pathways&#8221;) +<\/p>\n<p>ylab(&#8220;Counts&#8221;)<\/p>\n<p><img decoding=\"async\" loading=\"lazy\" width=\"640\" height=\"525\" class=\"wp-image-25236\" src=\"https:\/\/i0.wp.com\/www.biocloudservice.com\/wordpress\/wp-content\/uploads\/2024\/01\/2023-07-11-22-41-17.png?resize=640%2C525\" alt=\"\u622a\u5c4f2023-07-11 22.41.17\" srcset=\"https:\/\/i0.wp.com\/www.biocloudservice.com\/wordpress\/wp-content\/uploads\/2024\/01\/2023-07-11-22-41-17.png?w=1267 1267w, https:\/\/i0.wp.com\/www.biocloudservice.com\/wordpress\/wp-content\/uploads\/2024\/01\/2023-07-11-22-41-17.png?resize=300%2C246 300w, https:\/\/i0.wp.com\/www.biocloudservice.com\/wordpress\/wp-content\/uploads\/2024\/01\/2023-07-11-22-41-17.png?resize=1024%2C840 1024w, https:\/\/i0.wp.com\/www.biocloudservice.com\/wordpress\/wp-content\/uploads\/2024\/01\/2023-07-11-22-41-17.png?resize=768%2C630 768w, https:\/\/i0.wp.com\/www.biocloudservice.com\/wordpress\/wp-content\/uploads\/2024\/01\/2023-07-11-22-41-17.png?resize=600%2C492 600w\" sizes=\"(max-width: 640px) 100vw, 640px\" data-recalc-dims=\"1\" \/><\/p>\n<h2>\u987a\u5e8f\u8c03\u6574<\/h2>\n<p>linstall.packages(&#8220;dply&#8221;)<\/p>\n<p>install.packages(&#8220;forcats&#8221;)<\/p>\n<p>library(ggplot2)<\/p>\n<p>library(forcats)<\/p>\n<p>library(dplyr)<\/p>\n<p>data1%&gt;%<\/p>\n<p>mutate(x = fct_reorder(x,y))%&gt;% #\u964d\u5e8f\u7684\u8bdd\u6539\u4e3adesc(y)<\/p>\n<p>ggplot(aes(x= x, y=y,color = x)) #\u8fd9\u91cc\u6620\u5c04\u4e86\u76f8\u5e94\u7684\u989c\u8272+<\/p>\n<p>geom_segment( aes(x=x, xend=x, y=0, yend=y),size=1,linetype=&#8221;dotdash&#8221; )+<\/p>\n<p>geom_point( size=5, color= &#8220;black&#8221;, fill=alpha(&#8220;red&#8221;, 0.3), alpha=0.7, shape=21, stroke=2)+<\/p>\n<p>theme_light() +<\/p>\n<p>#coord_flip() + \u63a7\u5236\u56fe\u5f62\u662f\u5426\u6c34\u5e73\u653e\u7f6e<\/p>\n<p>theme(<\/p>\n<p>panel.grid.major.x = element_blank(),<\/p>\n<p>panel.border = element_blank(),<\/p>\n<p>axis.ticks.x = element_blank()<\/p>\n<p>) +<\/p>\n<p>xlab(&#8220;Pathways&#8221;) +<\/p>\n<p>ylab(&#8220;Counts&#8221;)<\/p>\n<p>\u8fd9\u6837\u662f\u4e0d\u662f\u66f4\u52a0\u7684\u6e05\u6670\u597d\u770b\u4e86\u5462\uff5e<\/p>\n<p><img decoding=\"async\" loading=\"lazy\" width=\"640\" height=\"535\" class=\"wp-image-25237\" src=\"https:\/\/i0.wp.com\/www.biocloudservice.com\/wordpress\/wp-content\/uploads\/2024\/01\/2023-07-11-22-56-42.png?resize=640%2C535\" alt=\"\u622a\u5c4f2023-07-11 22.56.42\" srcset=\"https:\/\/i0.wp.com\/www.biocloudservice.com\/wordpress\/wp-content\/uploads\/2024\/01\/2023-07-11-22-56-42.png?w=1022 1022w, https:\/\/i0.wp.com\/www.biocloudservice.com\/wordpress\/wp-content\/uploads\/2024\/01\/2023-07-11-22-56-42.png?resize=300%2C251 300w, https:\/\/i0.wp.com\/www.biocloudservice.com\/wordpress\/wp-content\/uploads\/2024\/01\/2023-07-11-22-56-42.png?resize=768%2C643 768w, https:\/\/i0.wp.com\/www.biocloudservice.com\/wordpress\/wp-content\/uploads\/2024\/01\/2023-07-11-22-56-42.png?resize=600%2C502 600w\" sizes=\"(max-width: 640px) 100vw, 640px\" data-recalc-dims=\"1\" \/><\/p>\n<h2>\u66f4\u6539\u56fe\u8868\u7684\u57fa\u7ebf<\/h2>\n<p>data1%&gt;%<\/p>\n<p>mutate(x = fct_reorder(x,y))%&gt;% #\u964d\u5e8f\u7684\u8bdd\u6539\u4e3adesc(y)<\/p>\n<p>ggplot(aes(x= x, y=y,color = x)) +<\/p>\n<p>geom_segment( aes(x=x, xend=x, y=1, yend=y),size=1,linetype=&#8221;dotdash&#8221; )+<\/p>\n<p>geom_point( size=5, color= &#8220;black&#8221;, fill=alpha(&#8220;red&#8221;, 0.3), alpha=0.7, shape=21, stroke=2)+<\/p>\n<p>theme_light() +<\/p>\n<p>#coord_flip() + \u63a7\u5236\u56fe\u5f62\u662f\u5426\u6c34\u5e73\u653e\u7f6e<\/p>\n<p>theme(<\/p>\n<p>panel.grid.major.x = element_blank(),<\/p>\n<p>panel.border = element_blank(),<\/p>\n<p>axis.ticks.x = element_blank()<\/p>\n<p>) +<\/p>\n<p>xlab(&#8220;Pathways&#8221;) +<\/p>\n<p>ylab(&#8220;Counts&#8221;)<\/p>\n<p><img decoding=\"async\" loading=\"lazy\" width=\"640\" height=\"527\" class=\"wp-image-25238\" src=\"https:\/\/i0.wp.com\/www.biocloudservice.com\/wordpress\/wp-content\/uploads\/2024\/01\/2023-07-11-23-00-31.png?resize=640%2C527\" alt=\"\u622a\u5c4f2023-07-11 23.00.31\" srcset=\"https:\/\/i0.wp.com\/www.biocloudservice.com\/wordpress\/wp-content\/uploads\/2024\/01\/2023-07-11-23-00-31.png?w=1022 1022w, https:\/\/i0.wp.com\/www.biocloudservice.com\/wordpress\/wp-content\/uploads\/2024\/01\/2023-07-11-23-00-31.png?resize=300%2C247 300w, https:\/\/i0.wp.com\/www.biocloudservice.com\/wordpress\/wp-content\/uploads\/2024\/01\/2023-07-11-23-00-31.png?resize=768%2C633 768w, https:\/\/i0.wp.com\/www.biocloudservice.com\/wordpress\/wp-content\/uploads\/2024\/01\/2023-07-11-23-00-31.png?resize=600%2C494 600w\" sizes=\"(max-width: 640px) 100vw, 640px\" data-recalc-dims=\"1\" \/><\/p>\n<p>\u8fd9\u6837\u7684\u56fe\u662f\u4e0d\u662f\u6709\u70b9\u610f\u601d\u4e86\uff5e<\/p>\n<h2>\u63a7\u5236\u56fe\u5f62\u662f\u5426\u6c34\u5e73\u653e\u7f6e<\/h2>\n<p>data1%&gt;%<\/p>\n<p>mutate(x = fct_reorder(x,y))%&gt;% #\u964d\u5e8f\u7684\u8bdd\u6539\u4e3adesc(y)<\/p>\n<p>ggplot(aes(x= x, y=y,color = x)) +<\/p>\n<p>geom_segment( aes(x=x, xend=x, y=1, yend=y),size=1,linetype=&#8221;longdash&#8221; )+<\/p>\n<p>geom_point( size=5, color= &#8220;black&#8221;, fill=alpha(&#8220;red&#8221;, 0.3), alpha=0.7, shape=21, stroke=2)+<\/p>\n<p>theme_light() +<\/p>\n<p>coord_flip() + #\u63a7\u5236\u56fe\u5f62\u662f\u5426\u6c34\u5e73\u653e\u7f6e<\/p>\n<p>theme(<\/p>\n<p>panel.grid.major.x = element_blank(),<\/p>\n<p>panel.border = element_blank(),<\/p>\n<p>axis.ticks.x = element_blank()<\/p>\n<p>) +<\/p>\n<p>xlab(&#8220;Pathways&#8221;) +<\/p>\n<p>ylab(&#8220;Counts&#8221;)<\/p>\n<p><img decoding=\"async\" loading=\"lazy\" width=\"640\" height=\"530\" class=\"wp-image-25239\" src=\"https:\/\/i0.wp.com\/www.biocloudservice.com\/wordpress\/wp-content\/uploads\/2024\/01\/2023-07-11-23-02-49.png?resize=640%2C530\" alt=\"\u622a\u5c4f2023-07-11 23.02.49\" srcset=\"https:\/\/i0.wp.com\/www.biocloudservice.com\/wordpress\/wp-content\/uploads\/2024\/01\/2023-07-11-23-02-49.png?w=1269 1269w, https:\/\/i0.wp.com\/www.biocloudservice.com\/wordpress\/wp-content\/uploads\/2024\/01\/2023-07-11-23-02-49.png?resize=300%2C248 300w, https:\/\/i0.wp.com\/www.biocloudservice.com\/wordpress\/wp-content\/uploads\/2024\/01\/2023-07-11-23-02-49.png?resize=1024%2C848 1024w, https:\/\/i0.wp.com\/www.biocloudservice.com\/wordpress\/wp-content\/uploads\/2024\/01\/2023-07-11-23-02-49.png?resize=768%2C636 768w, https:\/\/i0.wp.com\/www.biocloudservice.com\/wordpress\/wp-content\/uploads\/2024\/01\/2023-07-11-23-02-49.png?resize=600%2C497 600w\" sizes=\"(max-width: 640px) 100vw, 640px\" data-recalc-dims=\"1\" 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