{"id":28029,"date":"2024-02-04T17:30:00","date_gmt":"2024-02-04T09:30:00","guid":{"rendered":"http:\/\/www.biocloudservice.com\/wordpress\/?p=28029"},"modified":"2024-02-04T17:30:01","modified_gmt":"2024-02-04T09:30:01","slug":"%e8%bf%98%e5%9c%a8%e7%94%a8ppt%e5%81%9a%e5%b1%82%e7%ba%a7%e5%9b%be%ef%bc%9ftreemap%e5%8c%85%e8%ae%a9%e4%bd%a0%e7%9a%84%e6%a0%91%e7%8a%b6%e7%bb%93%e6%9e%84%e5%9b%be%e7%86%a0%e7%86%a0%e5%8f%91%e5%85%89","status":"publish","type":"post","link":"http:\/\/www.biocloudservice.com\/wordpress\/?p=28029","title":{"rendered":"\u8fd8\u5728\u7528PPT\u505a\u5c42\u7ea7\u56fe\uff1ftreemap\u5305\u8ba9\u4f60\u7684\u6811\u72b6\u7ed3\u6784\u56fe\u71a0\u71a0\u53d1\u5149"},"content":{"rendered":"

Hello\uff0c\u5404\u4f4d\u5c0f\u4f19\u4f34\u54b1\u4eec\u53c8\u89c1\u9762\u5566\uff01\u5176\u5b9e\u8fd9\u51e0\u5929\u5c0f\u679c\u5bf9\u81ea\u5df1\u6240\u719f\u6089\u7684R\u5305\u8fdb\u884c\u4e86\u6574\u7406\u53cd\u601d\uff0c\u6574\u4f53\u53d1\u73b0\u5bf9GO\u6216KEGG\u5bcc\u96c6\u5206\u6790\u7ed3\u679c\u7684\u53ef\u89c6\u5316\u3001\u5bf9\u6e7f\u5b9e\u9a8c\u7ed3\u679c\u7684\u53ef\u89c6\u5316\u3001\u5bf9\u57fa\u56e0\u8868\u8fbe\u6570\u636e\u7684\u53ef\u89c6\u5316\u7ed3\u679c\u53ef\u80fd\u6709\u4e9b\u5343\u7bc7\u4e00\u5f8b\uff0c\u5f88\u4e45\u6ca1\u6709\u63a8\u9648\u521b\u65b0\u4e86\u3002\u6240\u4ee5\u5c0f\u679c\u4eca\u5929\u7ed9\u5927\u5bb6\u63a8\u8350\u4e00\u4e2a\u6811\u72b6\u56fe\uff08treemap\uff09\u7ed8\u5236\u7684R\u5305\uff0c\u76f8\u4fe1\u80af\u5b9a\u4f1a\u8ba9\u5927\u5bb6\u773c\u524d\u4e00\u4eae\u54e6\u3002<\/p>\n

treemap\u5305\u662fR\u8bed\u8a00\u4e2d\u7528\u4e8e\u521b\u5efa\u6811\u72b6\u56fe\u7684\u4e00\u4e2a\u5c0f\u5de5\u5177\uff0c\u800c\u6811\u72b6\u56fe\u662f\u4e00\u79cd\u53ef\u4ee5\u5c06\u5c42\u6b21\u7ed3\u6784\u6570\u636e\u4ee5\u77e9\u5f62\u5757\u7684\u5f62\u5f0f\u8868\u793a\u51fa\u6765\uff0c\u5176\u4e2d\u7684\u6bcf\u4e2a\u5757\u7684\u5927\u5c0f\u4e0e\u6570\u636e\u7684\u6570\u91cf\u6216\u6743\u91cd\u6210\u6bd4\u4f8b\uff0c\u4e0d\u4ec5\u662f\u5bf9\u65e5\u5e38\u7684\u6570\u636e\u8fd8\u662f\u5bf9\u54b1\u4eec\u6240\u4fa7\u91cd\u7684\u751f\u7269\u4fe1\u606f\u5b66\u6570\u636e\uff0ctreemap\u5747\u5b58\u5728\u4e00\u4e9b\u6709\u6548\u679c\u7684\u5e94\u7528\u54e6\uff1a<\/p>\n

\u6bd4\u5982\u5927\u5bb6\u53ef\u4ee5\u4f7f\u7528treemap\u76f4\u89c2\u5730\u5c55\u793a\u5b9e\u9a8c\u8bbe\u8ba1\u7684\u5c42\u6b21\u7ed3\u6784\uff0c\u5e2e\u52a9\u5927\u5bb6\u66f4\u597d\u5730\u7406\u89e3\u5b9e\u9a8c\u7ec4\u7ec7\u548c\u5173\u7cfb\u6216\u4ee5\u77e9\u5f62\u5757\u7684\u5f62\u5f0f\u663e\u793a\u6570\u636e\uff0c\u6709\u52a9\u4e8e\u6570\u636e\u5206\u5e03\u548c\u8d8b\u52bf\u80fd\u66f4\u5bb9\u6613\u5730\u5448\u73b0\u51fa\u6765\u3002\u5176\u6b21\uff0c\u5bf9\u4e8e\u57fa\u56e0\u8868\u8fbe\u5b9e\u9a8c\uff0ctreemap\u53ef\u4ee5\u7528\u4e8e\u5c55\u793a\u57fa\u56e0\u5bb6\u65cf\u3001\u9014\u5f84\u6216\u5176\u4ed6\u751f\u7269\u5b66\u7c7b\u522b\u7684\u8868\u8fbe\u6c34\u5e73\uff0c\u6bcf\u4e2a\u77e9\u5f62\u5757\u53ef\u4ee5\u4ee3\u8868\u4e00\u4e2a\u57fa\u56e0\u6216\u57fa\u56e0\u96c6\uff0c\u800c\u77e9\u5f62\u7684\u5927\u5c0f\u53ef\u4ee5\u53cd\u6620\u5176\u8868\u8fbe\u6c34\u5e73\uff0c\u8fd9\u6837\u7684\u53ef\u89c6\u5316\u7ed3\u679c\u6709\u52a9\u4e8e\u5bfb\u627e\u5728\u4e0d\u540c\u6761\u4ef6\u4e0b\u62e5\u6709\u76f8\u540c\u8868\u8fbe\u6a21\u5f0f\u7684\u57fa\u56e0\u3002<\/p>\n

\u6b63\u5982\u4ee5\u4e0a\u9002\u5e94\u6761\u4ef6\u53ef\u89c1\uff0ctreemap\u5305\u4e0d\u4ec5\u662f\u5728\u751f\u7269\u4fe1\u606f\u5b66\u8fd8\u662f\u5728\u5b9e\u9a8c\u751f\u7269\u5b66\u6216\u65e5\u5e38\u7684\u5e94\u7528\u4e2d\u5747\u5177\u6709\u826f\u597d\u7684\u9002\u7528\u6761\u4ef6\uff0c\u6240\u4ee5\u5bf9\u4ed6\u7684\u4f7f\u7528\u53ca\u5404\u79cd\u51fd\u6570\u7684\u9002\u5e94\u6761\u4ef6\u8fdb\u884c\u7cfb\u7edf\u5b66\u4e60\u662f\u5f88\u6709\u5fc5\u8981\u7684\u3002\u4eca\u5929\u54b1\u4eec\u7684\u53c2\u8003\u6570\u636e\u7528\u7684\u662f\u5c0f\u679c\u4e4b\u524d\u6240\u505a\u7684\u6bd4\u8f83\u57fa\u56e0\u7ec4\u5b66\u4e2d\u663e\u8457\u6269\u5f20\u57fa\u56e0\u6240\u5bcc\u96c6\u7684GO terms\u54e6\u3002\u8bf4\u5230\u8fd9\u91cc\uff0c\u5982\u679c\u5927\u5bb6\u89c9\u5f97\u5728\u5904\u7406\u6bd4\u8f83\u57fa\u56e0\u7ec4\u6216\u8005\u7a7a\u95f4\u8f6c\u5f55\u7ec4\u7b49\u5927\u578b\u6570\u636e\u7684\u65f6\u5019\uff0c\u611f\u5230\u7535\u8111\u529b\u4e0d\u4ece\u5fc3\uff0c\u5b9e\u5728\u662f\u6709\u4e9b\u5361\u987f\uff0c\u8fd9\u6837\u7684\u8bdd\u5c0f\u679c\u63a8\u8350\u4f60\u4f7f\u7528Linux\u7cfb\u7edf\uff0c\u5982\u679c\u4f60\u624b\u5934\u6ca1\u6709\u7684\u8bdd\uff0c\u53ef\u4ee5\u8054\u7cfb\u5c0f\u679c\u8fdb\u884c\u79df\u8d41\u54e6\uff0c\u5c0f\u679c\u7684\u6240\u6709\u6570\u636e\u90fd\u662f\u5728\u6211\u4eec\u7684\u670d\u52a1\u5668\u4e0a\u9762\u5904\u7406\u7684\u5462\uff0c\u5c4a\u65f6\u5982\u679c\u6709\u95ee\u9898\u4e5f\u80fd\u76f8\u4e92\u6c9f\u901a\u554a\uff01<\/p>\n

\u90a3\u54b1\u4eec\u5c31\u4e0d\u518d\u8bf4\u95f2\u8bdd\u4e86\uff0c\u76f4\u63a5\u4e0a\u5e72\u8d27\uff1a<\/p>\n

#\u5b89\u88c5\u5305\u4e0e\u8c03\u7528<\/p>\n

install.packages(‘treemap’)<\/p>\n

library(treemap)<\/p>\n

#\u8bfb\u5165\u6570\u636e<\/p>\n

data <- read.table(‘\u8f93\u5165\u6570\u636e.txt’,sep = ‘\\t’,header = T)<\/p>\n

#\u7b80\u5355\u51fa\u56fe<\/p>\n

P1 <- treemap(data, #\u753b\u56fe\u6570\u636e<\/p>\n

index = ‘GO_level’, #\u5bf9\u4ec0\u4e48\u8fdb\u884c\u7ed8\u5236<\/p>\n

vSize = ‘number’ #\u6309\u7167\u54ea\u4e00\u5217\u5bf9index\u8fdb\u884c\u7ed8\u5236<\/p>\n

)<\/p>\n

<\/p>\n

#\u989c\u8272\u66f4\u6539<\/p>\n

P2 <- treemap(data, #\u753b\u56fe\u6570\u636e<\/p>\n

index = ‘GO_level’, #\u5bf9\u4ec0\u4e48\u8fdb\u884c\u7ed8\u5236<\/p>\n

vSize = ‘number’, #\u6309\u7167\u54ea\u4e00\u5217\u5bf9index\u8fdb\u884c\u7ed8\u5236<\/p>\n

vColor = ‘number’, #\u4f9d\u636e\u6240\u7ed9\u6570\u636e\u5bf9\u5c0f\u65b9\u6846\u8fdb\u884c\u4e0a\u8272<\/p>\n

palette = ‘Set1’ #\u66f4\u6539\u989c\u8272\uff0c\u662fRColorBrewer\u7684\u8c03\u8272\u677f<\/p>\n

)<\/p>\n

\"\u56fe\u793a\n\n\u63cf\u8ff0\u5df2\u81ea\u52a8\u751f\u6210\"<\/p>\n

#\u5b57\u4f53\u6dfb\u52a0<\/p>\n

P3 <- treemap(data, #\u753b\u56fe\u6570\u636e<\/p>\n

index = c(‘GO_type’,’GO_level’), #\u5bf9\u4e24\u4e2a\u7ea7\u522b\u8fdb\u884c\u66f4\u6539\uff0c\u5927\u7684\u5728\u524d\u9762<\/p>\n

vSize = ‘number’, #\u6309\u7167\u54ea\u4e00\u5217\u5bf9index\u8fdb\u884c\u7ed8\u5236<\/p>\n

palette = ‘Set1’, #\u66f4\u6539\u989c\u8272\uff0c\u662fRColorBrewer\u7684\u8c03\u8272\u677f<\/p>\n

fontsize.labels=c(20, 10), #\u6309\u7ea7\u522b\u66f4\u6539\u5b57\u4f53\u5927\u5c0f\uff0c\u82e5\u53ea\u6709\u4e00\u4e2a\u6570\u5219\u5168\u90e8\u5b57\u4f53\u5927\u5c0f\u5747\u66f4\u6539<\/p>\n

inflate.labels = F, #\u5b57\u4f53\u662f\u5426\u6269\u5927\uff0c\u82e5\u4e3aT\u5219\u5728fontsize.labels\u7684\u57fa\u7840\u4e0a\u6269\u5927<\/p>\n

#\u6309\u7167\u7ea7\u522b\u5206\u522b\u66f4\u6539\u5b57\u4f53\u7684\u4f4d\u7f6e<\/p>\n

align.labels=list(c(“left”, “top”), c(“center”, “center”)),<\/p>\n

lowerbound.cex.labels=0,#\u662f\u5426\u5c55\u793a\u4f4e\u4e00\u7ea7\u522b\u7684\u6807\u7b7e\uff0c1\u62160<\/p>\n

force.print.labels=T #\u5982\u679c\u6807\u7b7e\u4e0d\u7b26\uff0c\u662f\u5426\u5f3a\u5236\u6253\u5370\u6807\u7b7e<\/p>\n

)<\/p>\n

\"\u56fe\u8868,<\/p>\n

#\u5b57\u4f53\u66f4\u6539<\/p>\n

P4 <- treemap(data, #\u753b\u56fe\u6570\u636e<\/p>\n

index = c(‘GO_type’,’GO_level’), #\u5bf9\u4e24\u4e2a\u7ea7\u522b\u8fdb\u884c\u66f4\u6539\uff0c\u5927\u7684\u5728\u524d\u9762<\/p>\n

vSize = ‘number’, #\u6309\u7167\u54ea\u4e00\u5217\u5bf9index\u8fdb\u884c\u7ed8\u5236<\/p>\n

palette = ‘Set1’, #\u66f4\u6539\u989c\u8272\uff0c\u662fRColorBrewer\u7684\u8c03\u8272\u677f<\/p>\n

fontsize.labels=c(20, 10), #\u6309\u7ea7\u522b\u66f4\u6539\u5b57\u4f53\u5927\u5c0f\uff0c\u82e5\u53ea\u6709\u4e00\u4e2a\u6570\u5219\u5168\u90e8\u5b57\u4f53\u5927\u5c0f\u5747\u66f4\u6539<\/p>\n

fontcolor.labels = ‘white’ , #\u5b57\u4f53\u989c\u8272<\/p>\n

title = ‘GO annotation’, #\u6dfb\u52a0\u6807\u9898<\/p>\n

fontsize.title = 23, #\u5b57\u4f53\u5927\u5c0f<\/p>\n

fontface.labels = ‘italic’ ,#”plain”, “bold”, “italic”, “oblique”, and “bold.italic”<\/p>\n

fontfamily.labels = ‘serif’, #\u5b57\u4f53\u6837\u5f0f “serif”, “sans”, “mono”, “symbol”<\/p>\n

fontfamily.title = ‘mono’<\/p>\n

)<\/p>\n

\"\u56fe\u8868,<\/p>\n

#\u6539\u53d8\u989c\u8272\u6620\u5c04\u65b9\u5f0ftype<\/p>\n

index <- treemap(data,index = c(‘GO_type’,’GO_level’), #\u5c42\u6b21\u7ed3\u6784\u5206\u7c7b\u53d8\u91cf\uff0c\u5927\u7684\u5728\u524d<\/p>\n

vSize = ‘number’, #\u8868\u793a\u5355\u4e2a\u77e9\u5f62\u7684\u9762\u79ef\u5927\u5c0f<\/p>\n

vColor = ‘number’, #\u4f9d\u636e\u6240\u7ed9\u6570\u636e\u5bf9\u5c0f\u65b9\u6846\u8fdb\u884c\u4e0a\u8272<\/p>\n

palette = ‘Set2’, #\u989c\u8272\u98ce\u683c<\/p>\n

title = ‘GO annotation’,<\/p>\n

#type\u4e3b\u8981\u662f\u5bf9treemap\u56fe\u7684\u989c\u8272\u8fdb\u884c\u6539\u53d8\uff0cindex,value,comp,dens,depth,categorical,color,manual<\/p>\n

type = ‘index’, #index\u8868\u793a\u5bf9\u7ed9\u5b9a\u7684\u7ea7\u522b\u8fdb\u884c\u989c\u8272\u8c03\u6574<\/p>\n

fontsize.labels=c(20, 10), #\u6309\u7ea7\u522b\u66f4\u6539\u5b57\u4f53\u5927\u5c0f\uff0c\u82e5\u53ea\u6709\u4e00\u4e2a\u6570\u5219\u5168\u90e8\u5b57\u4f53\u5927\u5c0f\u5747\u66f4\u6539<\/p>\n

inflate.labels = F, #\u5b57\u4f53\u662f\u5426\u6269\u5927\uff0c\u82e5\u4e3aT\u5219\u5728fontsize.labels\u7684\u57fa\u7840\u4e0a\u6269\u5927<\/p>\n

#\u6309\u7167\u7ea7\u522b\u5206\u522b\u66f4\u6539\u5b57\u4f53\u7684\u4f4d\u7f6e<\/p>\n

align.labels=list(c(“left”, “top”), c(“center”, “center”)),<\/p>\n

lowerbound.cex.labels=0,#\u662f\u5426\u5c55\u793a\u4f4e\u4e00\u7ea7\u522b\u7684\u6807\u7b7e\uff0c1\u62160<\/p>\n

force.print.labels=T #\u5982\u679c\u6807\u7b7e\u4e0d\u7b26\uff0c\u662f\u5426\u5f3a\u5236\u6253\u5370\u6807\u7b7e<\/p>\n

)<\/p>\n

\"\u56fe\u8868,<\/p>\n

value <- treemap(data,index = c(‘GO_type’,’GO_level’), #\u5c42\u6b21\u7ed3\u6784\u5206\u7c7b\u53d8\u91cf\uff0c\u5927\u7684\u5728\u524d<\/p>\n

vSize = ‘number’, #\u8868\u793a\u5355\u4e2a\u77e9\u5f62\u7684\u9762\u79ef\u5927\u5c0f<\/p>\n

vColor = ‘number’, #\u4f9d\u636e\u6240\u7ed9\u6570\u636e\u5bf9\u5c0f\u65b9\u6846\u8fdb\u884c\u4e0a\u8272<\/p>\n

palette = ‘Set2’, #\u989c\u8272\u98ce\u683c<\/p>\n

title = ‘GO annotation’,<\/p>\n

#type\u4e3b\u8981\u662f\u5bf9treemap\u56fe\u7684\u989c\u8272\u8fdb\u884c\u6539\u53d8\uff0cindex,value,comp,dens,depth,categorical,color,manual<\/p>\n

type = ‘value’, #\u4f9d\u636evColor\u7684\u5927\u5c0f\u8fdb\u884c\u6e10\u53d8\u586b\u5145<\/p>\n

fontsize.labels=c(20, 10), #\u6309\u7ea7\u522b\u66f4\u6539\u5b57\u4f53\u5927\u5c0f\uff0c\u82e5\u53ea\u6709\u4e00\u4e2a\u6570\u5219\u5168\u90e8\u5b57\u4f53\u5927\u5c0f\u5747\u66f4\u6539<\/p>\n

fontsize.legend = 15, #\u5bf9\u56fe\u4f8b\u5927\u5c0f\u8fdb\u884c\u8c03\u6574<\/p>\n

fontfamily.legend = ‘mono’, #\u5bf9\u56fe\u4f8b\u5b57\u4f53\u8fdb\u884c\u8c03\u6574<\/p>\n

inflate.labels = F, #\u5b57\u4f53\u662f\u5426\u6269\u5927\uff0c\u82e5\u4e3aT\u5219\u5728fontsize.labels\u7684\u57fa\u7840\u4e0a\u6269\u5927<\/p>\n

#\u6309\u7167\u7ea7\u522b\u5206\u522b\u66f4\u6539\u5b57\u4f53\u7684\u4f4d\u7f6e<\/p>\n

align.labels=list(c(“left”, “top”), c(“center”, “center”)),<\/p>\n

lowerbound.cex.labels=0,#\u662f\u5426\u5c55\u793a\u4f4e\u4e00\u7ea7\u522b\u7684\u6807\u7b7e\uff0c1\u62160<\/p>\n

force.print.labels=T #\u5982\u679c\u6807\u7b7e\u4e0d\u7b26\uff0c\u662f\u5426\u5f3a\u5236\u6253\u5370\u6807\u7b7e<\/p>\n

)<\/p>\n

\"\u56fe\u793a,<\/p>\n

comp <- treemap(data,index = c(‘GO_type’,’GO_level’), #\u5c42\u6b21\u7ed3\u6784\u5206\u7c7b\u53d8\u91cf\uff0c\u5927\u7684\u5728\u524d<\/p>\n

vSize = ‘number’, #\u8868\u793a\u5355\u4e2a\u77e9\u5f62\u7684\u9762\u79ef\u5927\u5c0f<\/p>\n

vColor = ‘number’, #\u4f9d\u636e\u6240\u7ed9\u6570\u636e\u5bf9\u5c0f\u65b9\u6846\u8fdb\u884c\u4e0a\u8272<\/p>\n

palette = ‘Set2’, #\u989c\u8272\u98ce\u683c<\/p>\n

title = ‘GO annotation’,<\/p>\n

#type\u4e3b\u8981\u662f\u5bf9treemap\u56fe\u7684\u989c\u8272\u8fdb\u884c\u6539\u53d8\uff0cindex,value,comp,dens,depth,categorical,color,manual<\/p>\n

type = ‘comp’, #\u4f9d\u636e\u989c\u8272\u53d8\u91cf\u6570\u636e\u7684\u7d2f\u8ba1\u767e\u5206\u6bd4<\/p>\n

fontsize.labels=c(20, 10), #\u6309\u7ea7\u522b\u66f4\u6539\u5b57\u4f53\u5927\u5c0f\uff0c\u82e5\u53ea\u6709\u4e00\u4e2a\u6570\u5219\u5168\u90e8\u5b57\u4f53\u5927\u5c0f\u5747\u66f4\u6539<\/p>\n

fontsize.legend = 15, #\u5bf9\u56fe\u4f8b\u5927\u5c0f\u8fdb\u884c\u8c03\u6574<\/p>\n

fontfamily.legend = ‘mono’, #\u5bf9\u56fe\u4f8b\u5b57\u4f53\u8fdb\u884c\u8c03\u6574<\/p>\n

inflate.labels = F, #\u5b57\u4f53\u662f\u5426\u6269\u5927\uff0c\u82e5\u4e3aT\u5219\u5728fontsize.labels\u7684\u57fa\u7840\u4e0a\u6269\u5927<\/p>\n

#\u6309\u7167\u7ea7\u522b\u5206\u522b\u66f4\u6539\u5b57\u4f53\u7684\u4f4d\u7f6e<\/p>\n

align.labels=list(c(“left”, “top”), c(“center”, “center”)),<\/p>\n

lowerbound.cex.labels=0,#\u662f\u5426\u5c55\u793a\u4f4e\u4e00\u7ea7\u522b\u7684\u6807\u7b7e\uff0c1\u62160<\/p>\n

force.print.labels=T #\u5982\u679c\u6807\u7b7e\u4e0d\u7b26\uff0c\u662f\u5426\u5f3a\u5236\u6253\u5370\u6807\u7b7e<\/p>\n

)<\/p>\n

<\/p>\n

dens <- treemap(data,index = c(‘GO_type’,’GO_level’), #\u5c42\u6b21\u7ed3\u6784\u5206\u7c7b\u53d8\u91cf\uff0c\u5927\u7684\u5728\u524d<\/p>\n

vSize = ‘number’, #\u8868\u793a\u5355\u4e2a\u77e9\u5f62\u7684\u9762\u79ef\u5927\u5c0f<\/p>\n

vColor = ‘number’, #\u4f9d\u636e\u6240\u7ed9\u6570\u636e\u5bf9\u5c0f\u65b9\u6846\u8fdb\u884c\u4e0a\u8272<\/p>\n

palette = ‘Set2’, #\u989c\u8272\u98ce\u683c<\/p>\n

title = ‘GO annotation’,<\/p>\n

#type\u4e3b\u8981\u662f\u5bf9treemap\u56fe\u7684\u989c\u8272\u8fdb\u884c\u6539\u53d8\uff0cindex,value,comp,dens,depth,categorical,color,manual<\/p>\n

type = ‘dens’, #\u8ba1\u7b97vcolor\u4e0evsize\u7684\u6bd4\u503c<\/p>\n

fontsize.labels=c(20, 10), #\u6309\u7ea7\u522b\u66f4\u6539\u5b57\u4f53\u5927\u5c0f\uff0c\u82e5\u53ea\u6709\u4e00\u4e2a\u6570\u5219\u5168\u90e8\u5b57\u4f53\u5927\u5c0f\u5747\u66f4\u6539<\/p>\n

fontsize.legend = 15, #\u5bf9\u56fe\u4f8b\u5927\u5c0f\u8fdb\u884c\u8c03\u6574<\/p>\n

fontfamily.legend = ‘mono’, #\u5bf9\u56fe\u4f8b\u5b57\u4f53\u8fdb\u884c\u8c03\u6574<\/p>\n

inflate.labels = F, #\u5b57\u4f53\u662f\u5426\u6269\u5927\uff0c\u82e5\u4e3aT\u5219\u5728fontsize.labels\u7684\u57fa\u7840\u4e0a\u6269\u5927<\/p>\n

#\u6309\u7167\u7ea7\u522b\u5206\u522b\u66f4\u6539\u5b57\u4f53\u7684\u4f4d\u7f6e<\/p>\n

align.labels=list(c(“left”, “top”), c(“center”, “center”)),<\/p>\n

lowerbound.cex.labels=0,#\u662f\u5426\u5c55\u793a\u4f4e\u4e00\u7ea7\u522b\u7684\u6807\u7b7e\uff0c1\u62160<\/p>\n

force.print.labels=T #\u5982\u679c\u6807\u7b7e\u4e0d\u7b26\uff0c\u662f\u5426\u5f3a\u5236\u6253\u5370\u6807\u7b7e<\/p>\n

)<\/p>\n

<\/p>\n

depth <- treemap(data,index = c(‘GO_type’,’GO_level’), #\u5c42\u6b21\u7ed3\u6784\u5206\u7c7b\u53d8\u91cf\uff0c\u5927\u7684\u5728\u524d<\/p>\n

vSize = ‘number’, #\u8868\u793a\u5355\u4e2a\u77e9\u5f62\u7684\u9762\u79ef\u5927\u5c0f<\/p>\n

vColor = ‘number’, #\u4f9d\u636e\u6240\u7ed9\u6570\u636e\u5bf9\u5c0f\u65b9\u6846\u8fdb\u884c\u4e0a\u8272<\/p>\n

palette = ‘Set2’, #\u989c\u8272\u98ce\u683c<\/p>\n

title = ‘GO annotation’,<\/p>\n

#type\u4e3b\u8981\u662f\u5bf9treemap\u56fe\u7684\u989c\u8272\u8fdb\u884c\u6539\u53d8\uff0cindex,value,comp,dens,depth,categorical,color,manual<\/p>\n

type = ‘depth’, #\u5bf9\u7c7b\u522b\u8fdb\u884c\u586b\u5145<\/p>\n

fontsize.labels=c(20, 10), #\u6309\u7ea7\u522b\u66f4\u6539\u5b57\u4f53\u5927\u5c0f\uff0c\u82e5\u53ea\u6709\u4e00\u4e2a\u6570\u5219\u5168\u90e8\u5b57\u4f53\u5927\u5c0f\u5747\u66f4\u6539<\/p>\n

fontsize.legend = 15, #\u5bf9\u56fe\u4f8b\u5927\u5c0f\u8fdb\u884c\u8c03\u6574<\/p>\n

fontfamily.legend = ‘mono’, #\u5bf9\u56fe\u4f8b\u5b57\u4f53\u8fdb\u884c\u8c03\u6574<\/p>\n

inflate.labels = F, #\u5b57\u4f53\u662f\u5426\u6269\u5927\uff0c\u82e5\u4e3aT\u5219\u5728fontsize.labels\u7684\u57fa\u7840\u4e0a\u6269\u5927<\/p>\n

#\u6309\u7167\u7ea7\u522b\u5206\u522b\u66f4\u6539\u5b57\u4f53\u7684\u4f4d\u7f6e<\/p>\n

align.labels=list(c(“left”, “top”), c(“center”, “center”)),<\/p>\n

lowerbound.cex.labels=0,#\u662f\u5426\u5c55\u793a\u4f4e\u4e00\u7ea7\u522b\u7684\u6807\u7b7e\uff0c1\u62160<\/p>\n

force.print.labels=T, #\u5982\u679c\u6807\u7b7e\u4e0d\u7b26\uff0c\u662f\u5426\u5f3a\u5236\u6253\u5370\u6807\u7b7e<\/p>\n

position.legend = ‘bottom’ #\u6807\u7b7e\u4f4d\u7f6e\uff0cnone ,right, right<\/p>\n

)<\/p>\n

\"\u8868\u683c,<\/p>\n

\u9488\u5bf9\u4e8etype\u7684\u7c7b\u578b\u8fd8\u6709\u53e6\u5916\u4e09\u79cd\uff1acategorical\uff0ccolor\u548cmanual\u3002\u5206\u522b\u7684\u4f5c\u7528\u662f\uff1a<\/p>\n

categorical\uff1a\u6839\u636evColor\u7684\u6570\u503c\u8fdb\u884c\u586b\u8272<\/p>\n

color\uff1a\u6b64\u65f6vColor\u4e00\u5217\u5e94\u4e3a\u5341\u516d\u8fdb\u5236\u7684\u989c\u8272\u7c7b\uff08#RRGGBB\uff09<\/p>\n

manual\uff1avColor\u5217\u76f4\u63a5\u6620\u5c04\u5230\u8c03\u8272\u677f\u3002\u5e94\u540c\u65f6\u63d0\u4f9b\u8c03\u8272\u677f\u548c\u8303\u56f4\uff0c\u7136\u540e\u7ebf\u6027\u6620\u5c04\u3002<\/p>\n

\u5404\u4f4d\u5c0f\u4f19\u4f34\uff0c\u611f\u89c9\u600e\u4e48\u6837\u5462\uff0c\u8fd9\u4e2a\u56fe\u7684\u5c55\u793a\u65b9\u5f0f\u662f\u4e0d\u662f\u8f83\u4e4b\u524d\u7684\u5305\u7684\u5c55\u793a\u6709\u6240\u4e0d\u540c\u5462\uff0c\u5c0f\u679c\u5728\u770b\u6587\u732e\u7684\u65f6\u5019\uff0c\u5b83\u53ef\u662f\u8ba9\u5c0f\u679c\u773c\u524d\u4e00\u4eae\u54e6\uff0c\u7136\u540e\u8fdb\u884c\u4e86\u5b66\u4e60\u3001\u590d\u73b0\uff0c\u8bf7\u5927\u5bb6\u68c0\u9a8c\u5c0f\u679c\u7684\u5b66\u4e60\u6210\u679c\u5427\uff01<\/p>\n

\u4ee5\u4e0a\u4ec5\u662f\u5c0f\u679c\u5bf9GO\u5bcc\u96c6\u5206\u6790\u7684\u6574\u4f53\u5c55\u793a\uff0c\u5927\u5bb6\u662f\u5426\u53ef\u4ee5\u6839\u636e\u81ea\u5df1\u7684\u9700\u6c42\u5c55\u793aKEGG\u4e2d\u7684\u5927\u7c7b\u53ca\u5176\u4e2d\u5d4c\u5957\u7740\u4e8c\u7ea7\u5206\u7c7b\u6700\u540e\u8fd8\u6709\u4e09\u7ea7\u5206\u7c7b\u7684\u6570\u636e\u7ed3\u6784\u5462\uff0c\u6216\u8005\u5bf9\u4e0a\u8c03\u3001\u4e0b\u8c03\u57fa\u56e0\u8fdb\u884c\u5206\u7c7b\u5c55\u793a\uff1b\u5bf9\u4e0d\u540c\u4fe1\u53f7\u901a\u8def\u7684\u4e0d\u540c\u8868\u8fbe\u6a21\u5f0f\u7684\u57fa\u56e0\u8fdb\u884c\u7edf\u4e00\u53ef\u89c6\u5316\u5462\uff1f\u5f53\u7136\uff0c\u5c0f\u679c\u4ec5\u662f\u63d0\u4f9b\u4e00\u4e2a\u601d\u8def\uff0c\u5177\u4f53\u7684\u5f00\u53d1\u8fd8\u662f\u9700\u8981\u5f00\u52a8\u5404\u4f4d\u5c0f\u4f19\u4f34\u7684\u8111\u888b\u74dc\u54e6\u3002\u4f46\u662f\u5982\u679c\u5927\u5bb6\u5e76\u4e0d\u60f3\u5728\u6570\u636e\u5904\u7406\u548c\u56fe\u5f62\u53ef\u89c6\u5316\u4e0a\u82b1\u8d39\u82b1\u592a\u591a\u7684\u65f6\u95f4\uff0c\u53ef\u4ee5\u6765\u6211\u4eec\u7684\u4e91\u751f\u4fe1\u5e73\u53f0\u54e6\uff0c\u91cc\u9762\u6709\u591a\u79cd\u56fe\u5f62\u53ef\u89c6\u5316\u7684\u6210\u719f\u4ee3\u7801\uff0c\u53ea\u9700\u5927\u5bb6\u6309\u7167\u793a\u4f8b\u6570\u636e\u66f4\u6539\u81ea\u5df1\u7684\u6570\u636e\u7136\u540e\u4e0a\u4f20\u5c31\u53ef\u4ee5\u4e86\u54e6\uff0c\u975e\u5e38\u7b80\u4fbf\uff0c\u5feb\u6765\u52a0\u5165\u6211\u4eec\u5427\uff01\uff01<\/p>\n

http:\/\/www.biocloudservice.com\/home.html<\/p>\n","protected":false},"excerpt":{"rendered":"

Hello\uff0c\u5404\u4f4d\u5c0f\u4f19\u4f34\u54b1\u4eec\u53c8\u89c1\u9762\u5566\uff01\u5176\u5b9e\u8fd9\u51e0\u5929\u5c0f\u679c\u5bf9\u81ea\u5df1\u6240\u719f\u6089\u7684R\u5305\u8fdb\u884c\u4e86\u6574\u7406\u53cd\u601d\uff0c\u6574\u4f53\u53d1\u73b0\u5bf9GO\u6216KEGG\u5bcc […]<\/p>\n","protected":false},"author":1,"featured_media":0,"comment_status":"closed","ping_status":"closed","sticky":false,"template":"","format":"standard","meta":{"jetpack_post_was_ever_published":false,"_jetpack_newsletter_access":""},"categories":[1],"tags":[],"jetpack_featured_media_url":"","_links":{"self":[{"href":"http:\/\/www.biocloudservice.com\/wordpress\/index.php?rest_route=\/wp\/v2\/posts\/28029"}],"collection":[{"href":"http:\/\/www.biocloudservice.com\/wordpress\/index.php?rest_route=\/wp\/v2\/posts"}],"about":[{"href":"http:\/\/www.biocloudservice.com\/wordpress\/index.php?rest_route=\/wp\/v2\/types\/post"}],"author":[{"embeddable":true,"href":"http:\/\/www.biocloudservice.com\/wordpress\/index.php?rest_route=\/wp\/v2\/users\/1"}],"replies":[{"embeddable":true,"href":"http:\/\/www.biocloudservice.com\/wordpress\/index.php?rest_route=%2Fwp%2Fv2%2Fcomments&post=28029"}],"version-history":[{"count":1,"href":"http:\/\/www.biocloudservice.com\/wordpress\/index.php?rest_route=\/wp\/v2\/posts\/28029\/revisions"}],"predecessor-version":[{"id":28039,"href":"http:\/\/www.biocloudservice.com\/wordpress\/index.php?rest_route=\/wp\/v2\/posts\/28029\/revisions\/28039"}],"wp:attachment":[{"href":"http:\/\/www.biocloudservice.com\/wordpress\/index.php?rest_route=%2Fwp%2Fv2%2Fmedia&parent=28029"}],"wp:term":[{"taxonomy":"category","embeddable":true,"href":"http:\/\/www.biocloudservice.com\/wordpress\/index.php?rest_route=%2Fwp%2Fv2%2Fcategories&post=28029"},{"taxonomy":"post_tag","embeddable":true,"href":"http:\/\/www.biocloudservice.com\/wordpress\/index.php?rest_route=%2Fwp%2Fv2%2Ftags&post=28029"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}