{"id":28052,"date":"2024-02-04T17:51:41","date_gmt":"2024-02-04T09:51:41","guid":{"rendered":"http:\/\/www.biocloudservice.com\/wordpress\/?p=28052"},"modified":"2024-02-04T17:51:42","modified_gmt":"2024-02-04T09:51:42","slug":"%e8%b7%9f%e7%9d%80%e5%b0%8f%e6%9e%9c%e5%ad%a6%e9%a2%86%e7%95%a5%e7%bb%98%e5%9b%be%e7%9a%84%e9%ad%85%e5%8a%9b%ef%bc%81%e8%bd%bb%e6%9d%be%e5%a4%8d%e7%8e%b0if16-6%e9%ab%98%e5%88%86%e6%96%87%e7%8c%ae","status":"publish","type":"post","link":"http:\/\/www.biocloudservice.com\/wordpress\/?p=28052","title":{"rendered":"\u8ddf\u7740\u5c0f\u679c\u5b66\u9886\u7565\u7ed8\u56fe\u7684\u9b45\u529b\uff01\u8f7b\u677e\u590d\u73b0IF16.6\u9ad8\u5206\u6587\u732e\u4e2d\u7684\u7cbe\u7f8eChord\u56fe\uff01\uff01"},"content":{"rendered":"

\u5728\u79d1\u5b66\u7814\u7a76\u4e2d\uff0c\u6570\u636e\u53ef\u89c6\u5316\u662f\u5c55\u793a\u7814\u7a76\u6210\u679c\u5e76\u4f20\u9012\u4fe1\u606f\u7684\u91cd\u8981\u65b9\u5f0f\u3002\u5176\u4e2d\uff0cChord\u56fe\u4ee5\u5176\u72ec\u7279\u7684\u89c6\u89c9\u6548\u679c\u548c\u5f3a\u5927\u7684\u4fe1\u606f\u4f20\u8fbe\u80fd\u529b\uff0c\u5728\u5c55\u793a\u5b9e\u4f53\u95f4\u5173\u7cfb\u548c\u8054\u7cfb\u65b9\u9762\u626e\u6f14\u7740\u91cd\u8981\u89d2\u8272\u3002<\/p>\n

\u5c0f\u679c\u4eca\u5929\u5206\u4eab\u7684\u8fd9\u4efd\u9ad8\u5206\u6587\u732e\u4e2d\uff0cChord\u56fe\u4ee5IF16.6\u7684\u9ad8\u5f71\u54cd\u56e0\u5b50\u8363\u767b\u5176\u4e2d\uff0c\u4e3a\u8bfb\u8005\u5448\u73b0\u4e86\u4e00\u573a\u89c6\u89c9\u76db\u5bb4\u3002\u8fd9\u4e9b\u56fe\u8868\u4e0d\u4ec5\u4ee4\u4eba\u8d4f\u5fc3\u60a6\u76ee\uff0c\u66f4\u662f\u6df1\u85cf\u7740\u7814\u7a76\u7684\u5b9d\u8d35\u4fe1\u606f\u3002<\/p>\n

\u6240\u4ee5\u5c0f\u679c\u5e26\u9886\u5c0f\u4f19\u4f34\u53bb\u5b66\u4e60\u8fd9\u4e9b\u9ad8\u5206\u6587\u732e\u4e2d\u6570\u636e\u53ef\u89c6\u5316\u7684\u65b9\u6cd5\uff0c\u5e76\u8f7b\u677e\u590d\u73b0\u8fd9\u4e9b\u9ad8\u5206\u6587\u732e\u4e2d\u7cbe\u7f8eChord\u56fe\u7684\u7ed8\u5236\u8fc7\u7a0b\u3002\u6211\u4eec\u5148\u4e86\u89e3\u4e00\u4e0bChord\u56fe\uff0c\u5176\u5b9e\u5b83\u662f\u901a\u8fc7\u73af\u5f62\u5e03\u5c40\u5c55\u793a\u4e86\u4e0d\u540c\u5b9e\u4f53\u4e4b\u95f4\u7684\u5173\u7cfb\u7f51\u7edc\uff0c\u4ee5\u5f26\u7684\u65b9\u5f0f\u8fde\u63a5\u5404\u4e2a\u5b9e\u4f53\uff0c\u7ebf\u6761\u7684\u7c97\u7ec6\u3001\u989c\u8272\u7684\u6df1\u6d45\u90fd\u9690\u542b\u7740\u6570\u636e\u80cc\u540e\u7684\u4e30\u5bcc\u5185\u6db5\u3002\u6bcf\u4e00\u6761\u7ebf\u90fd\u662f\u4e00\u4e2a\u6545\u4e8b\uff0c\u8fde\u63a5\u7740\u6570\u636e\u4e2d\u7684\u5173\u8054\u548c\u8054\u7cfb\uff0c\u800c\u6bcf\u4e00\u6b21\u7ed8\u5236\u90fd\u662f\u5bf9\u6570\u636e\u672c\u8eab\u610f\u4e49\u7684\u518d\u6b21\u8be0\u91ca\u3002<\/p>\n

\u8fd9\u6b21\u5462\u6211\u4eec\u5c31\u53bb\u8e0f\u4e0aChord\u56fe\u7684\u7ed8\u5236\u4e4b\u65c5\u3002\u901a\u8fc7\u89e3\u8bfb\u9ad8\u5206\u6587\u732e\u4e2d\u7684\u6570\u636e\u7ed3\u6784\u548c\u53ef\u89c6\u5316\u624b\u6cd5\uff0c\u63a2\u7d22\u4e00\u4e0bChord\u56fe\u80cc\u540e\u7684\u7ed8\u5236\u6280\u5de7\u548c\u65b9\u6cd5\u3002\u4ece\u6570\u636e\u7684\u51c6\u5907\uff0c\u5230Chord\u56fe\u7684\u5e03\u5c40\u548c\u88c5\u9970\uff0c\u6211\u4eec\u5c06\u4e00\u6b65\u6b65\u89e3\u6790\u6bcf\u4e2a\u73af\u8282\uff0c\u8ba9\u590d\u6742\u7684\u56fe\u5f62\u53d8\u5f97\u6613\u4e8e\u7406\u89e3\u548c\u64cd\u4f5c\u3002<\/p>\n

\u6211\u4eec\u6765\u770b\u4e00\u4e0b\u5982\u4f55\u8fd9\u6b21\u5206\u4eab\u7684\u6587\u732e\u4e2d\u7684\u56fe\uff0c\u662f\u6765\u81ea\u300aA latitudinal gradient of deep-sea invasions for marine fishes\u300b\u7684\u56fe3\uff0c\u662f\u6765\u81eaIF16.6\u9876\u7ea7\u671f\u520a\uff1a<\/p>\n

<\/p>\n

\u4e0a\u8ff0\u8fd9\u4e2a\u56fe\uff0c\u548c\u6211\u4eec\u5e73\u65f6\u89c1\u5230\u7684\u4e00\u4e9b\u7ec6\u8282\u4e0d\u4e00\u6837\uff0c\u5c0f\u4f19\u4f34\u4e5f\u4e0d\u77e5\u9053\u5982\u4f55\u7ed8\u5236\uff0c\u4e0b\u9762\u6211\u4eec\u5c31\u5f00\u59cb\u7ed8\u5236\u5427<\/p>\n

\u8fd9\u91cc\u5462\u5c0f\u679c\u8fd8\u8981\u8bf4\u660e\u4e00\u4e0b\uff0c\u6211\u4eec\u8fd9\u6b21\u505a\u7684\u6570\u636e\u5206\u6790\u6570\u636e\u91cf\u662f\u975e\u5e38\u5927\u7684\uff0c\u6211\u4eec\u64cd\u4f5c\u5360\u7528\u5185\u5b58\u6bd4\u8f83\u5927\uff0c\u6240\u4ee5\u5efa\u8bae\u5404\u4f4d\u5c0f\u4f19\u4f34\u53ef\u4ee5\u4f7f\u7528\u670d\u52a1\u5668\u53bb\u8fd0\u884c\uff0c\u5982\u679c\u6ca1\u6709\u81ea\u5df1\u7684\u670d\u52a1\u5668\u4e5f\u6ca1\u6709\u5173\u7cfb\uff0c\u53ef\u4ee5\u6b22\u8fce\u8054\u7cfb\u6211\u4eec\u4f7f\u7528\u670d\u52a1\u5668\u79df\u8d41~<\/p>\n

\u6211\u4eec\u5148\u770b\u4e00\u4e0b\u6570\u636e\u7684\u683c\u5f0f<\/p>\n

dat<-read_excel(“data1.xlsx”)<\/p>\n

dat<\/p>\n

<\/p>\n

\u5c0f\u4f19\u4f34\u53ef\u4ee5\u6309\u7167\u8fd9\u6837\u7684\u6570\u636e\u81ea\u884c\u53bb\u8bbe\u7f6e<\/p>\n

\u7136\u540e\u6211\u4eec\u52a0\u8f7d\u4e00\u4e0b\u4f7f\u7528\u7684\u5305<\/p>\n

library(readxl)<\/p>\n

library(circlize)<\/p>\n

\u540e\u9762\u5c31\u53ef\u4ee5\u8fdb\u884c\u7ed8\u5236\u4e86\uff0c\u7ed8\u5236\u4e4b\u524d\u5462\uff0c\u6211\u4eec\u5148\u8bbe\u7f6e\u4e00\u4e0bCircos \u56fe\u7684\u53c2\u6570<\/p>\n

#circos.par\u5b9a\u4e49 Circos \u56fe\u7684\u6574\u4f53\u53c2\u6570<\/p>\n

circos.par(start.degree = 90, #\u63a7\u5236\u4e86\u8d77\u59cb\u89d2\u5ea6<\/p>\n

#gap.degree = 4,<\/p>\n

points.overflow.warning = FALSE,#\u63a7\u5236\u70b9\u6ea2\u51fa\u7684\u8b66\u544a<\/p>\n

gap.after=c(“A1″=5,”A2″=5,”A3″=15,#\u63a7\u5236\u5728\u7279\u5b9a\u533a\u5757\u540e\u7684\u95f4\u9694<\/p>\n

“B1″=5,”B2″=5,”B3″=15,<\/p>\n

“D1″=5,”D2″=5,”D3″=15))<\/p>\n

\u8fd9\u662f\u5bf9\u57fa\u7840\u7684\u8bbe\u7f6e\u4e86\u4e00\u4e0b\uff0c\u8fd8\u6709\u53bb\u8bbe\u7f6e\u6e38\u620f\u989d\u989c\u8272\u7684\u53d8\u91cf<\/p>\n

#\u989c\u8272\u5411\u91cf\uff0c\u7528\u4e8e\u8bbe\u5b9a\u4e0d\u540c\u533a\u5757\u7684\u989c\u8272<\/p>\n

grid.col<-c(“A1″=”#B0E0E6″,”A2″=”#2C8EB5″,”A3″=”#16465B”,<\/p>\n

“B1″=”#B0E0E6″,”B2″=”#2C8EB5″,”B3″=”#16465B”,<\/p>\n

“D1″=”#B0E0E6″,”D2″=”#2C8EB5″,”D3″=”#16465B”)<\/p>\n

\u989c\u8272\u8bbe\u7f6e\u5b8c\u6210\u540e\uff0c\u5c31\u662f\u5bf9\u4e0d\u540c\u533a\u57df\u8fdb\u884c\u5206\uff0c\u8fd9\u6837\u624d\u80fd\u5206\u6e05\u695a\u90a3\u4e2a\u533a\u57df\u5339\u914d\u90a3\u4e2a<\/p>\n

#\u533a\u5757\u7ec4\u7684\u6807\u7b7e\u5411\u91cf\uff0c\u7528\u4e8e\u5c06\u4e0d\u540c\u7684\u533a\u5757\u5206\u7ec4<\/p>\n

group<-c(“A1″=”A”,”A2″=”A”,”A3″=”A”,<\/p>\n

“B1″=”B”,”B2″=”B”,”B3″=”B”,<\/p>\n

“D1″=”D”,”D2″=”D”,”D3″=”D”)<\/p>\n

\u8bbe\u7f6e\u5b8c\uff0c\u6211\u4eec\u5c31\u521b\u5efa\u548c\u7ebf\u56fe\u4e86<\/p>\n

\u4e00\u4e9b\u4ee3\u7801\uff0c\u5c0f\u679c\u90fd\u8fdb\u884c\u4e86\u6ce8\u91ca\uff0c\u5c31\u4e0d\u4e00\u4e00\u4e3e\u4f8b\uff0c\u5f88\u597d\u7406\u89e3<\/p>\n

#\u521b\u5efa Chord \u56fe<\/p>\n

chordDiagram(dat,<\/p>\n

grid.col = grid.col,#\u7528\u4e8e\u533a\u5757\u989c\u8272\u7684\u5411\u91cf<\/p>\n

col = rand_color(nrow(dat)),#\u901a\u8fc7 rand_color \u51fd\u6570\u968f\u673a\u751f\u6210\u7528\u4e8e\u8fde\u7ebf\u7684\u989c\u8272<\/p>\n

group = group,#\u6307\u5b9a\u533a\u5757\u6240\u5c5e\u7684\u7ec4<\/p>\n

transparency = 0.25,#\u8bbe\u7f6e\u56fe\u5f62\u900f\u660e\u5ea6\u3002<\/p>\n

directional = 1,#\u6307\u5b9a\u8fde\u63a5\u662f\u5426\u6709\u65b9\u5411\u6027<\/p>\n

direction.type = c(“arrows”, “diffHeight”), #\u8bbe\u5b9a\u8fde\u63a5\u7ebf\u7684\u7c7b\u578b<\/p>\n

diffHeight = -0.04,#\u8c03\u6574\u8fde\u63a5\u7ebf\u7684\u9ad8\u5ea6<\/p>\n

annotationTrack = “grid”, #\u7528\u4e8e\u6dfb\u52a0\u6ce8\u91ca\u8f68\u9053\u548c\u8bbe\u7f6e\u5176\u9ad8\u5ea6\u3002<\/p>\n

annotationTrackHeight = c(0.08, 0.1),#\u7528\u4e8e\u6dfb\u52a0\u6ce8\u91ca\u8f68\u9053\u548c\u8bbe\u7f6e\u5176\u9ad8\u5ea6\u3002<\/p>\n

link.arr.type = “big.arrow”, #\u6307\u5b9a\u8fde\u63a5\u7bad\u5934\u7684\u7c7b\u578b<\/p>\n

# link.sort = TRUE,<\/p>\n

# link.decreasing = TRUE,<\/p>\n

link.largest.ontop = TRUE,#\u786e\u4fdd\u6700\u5927\u7684\u8fde\u63a5\u4f4d\u4e8e\u6700\u4e0a\u5c42<\/p>\n

#\u8c03\u6574 Chord \u56fe\u4e2d\u8f68\u9053\u7684\u5916\u89c2\u548c\u5e03\u5c40<\/p>\n

preAllocateTracks = list(<\/p>\n

track.height = 0.1,#\u8bbe\u7f6e\u8f68\u9053\u7684\u9ad8\u5ea6\u4e3a 0.1<\/p>\n

#\u8bbe\u5b9a\u8f68\u9053\u7684\u8fb9\u8ddd\uff0c\u7b2c\u4e00\u4e2a\u6570\u5b57\uff080.01\uff09\u4ee3\u8868\u8f68\u9053\u5185\u90e8\u5143\u7d20\u7684\u4e0a\u8fb9\u8ddd<\/p>\n

#\u7b2c\u4e8c\u4e2a\u6570\u5b57\uff080\uff09\u4ee3\u8868\u8f68\u9053\u5185\u90e8\u5143\u7d20\u7684\u4e0b\u8fb9\u8ddd<\/p>\n

track.margin = c(0.01, 0)<\/p>\n

))<\/p>\n

<\/p>\n

\u8fd9\u6837\u57fa\u7840\u7684\u56fe\u5f62\u5c31\u51fa\u6765\u4e86\uff0c\u540e\u9762\u6211\u4eec\u8fd8\u9700\u8981\u8fdb\u884c\u7ec6\u8282\u7684\u8c03\u6574<\/p>\n

\u53bb\u81ea\u5b9a\u4e49\u4e00\u4e0b\u8f68\u9053\u4e0a\u7684\u5185\u5bb9\uff0c\u548c\u6587\u732e\u4e2d\u4e00\u6837\uff0c\u8fd9\u5c31\u9700\u8981\u7528\u5230\u901a\u8fc7 circos.trackPlotRegion() \u51fd\u6570<\/p>\n

\u6765\u770b\u4e00\u4e0b\u5982\u4f55\u7ed8\u5236\u7684<\/p>\n

circos.trackPlotRegion(<\/p>\n

track.index = 2, #\u6307\u5b9a\u4e86\u8981\u7ed8\u5236\u7684\u8f68\u9053\u7684\u7d22\u5f15<\/p>\n

bg.border = NA, #\u8bbe\u7f6e\u8f68\u9053\u7684\u80cc\u666f\u8fb9\u6846\u4e3a\u900f\u660e<\/p>\n

#\u81ea\u5b9a\u4e49\u51fd\u6570\uff0c\u7528\u4e8e\u5728\u8f68\u9053\u4e0a\u7ed8\u5236\u5185\u5bb9<\/p>\n

#\u83b7\u53d6\u4e86\u5f53\u524d\u7ed8\u56fe\u533a\u57df\u7684 x \u8f74\u9650\u5236<\/p>\n

panel.fun = function(x, y) {<\/p>\n

#\u4ece\u7ec6\u80de\u5143\u6570\u636e\u4e2d\u83b7\u53d6\u4e86\u90e8\u5206\u4fe1\u606f\uff0c\u5904\u7406\u533a\u5757\u7684\u7d22\u5f15\u6216\u6807\u7b7e\u3002<\/p>\n

xlim = get.cell.meta.data(“xlim”)<\/p>\n

#sector.index = get.cell.meta.data(“sector.index”)<\/p>\n

sector.index = gsub(“[a-z]+_”, “”, get.cell.meta.data(“sector.index”))<\/p>\n

# \u7528\u4e8e\u5728\u8f68\u9053\u4e0a\u6dfb\u52a0\u6587\u5b57\u6807\u7b7e<\/p>\n

circos.text(<\/p>\n

x = mean(xlim), #\u6307\u5b9a\u4e86\u6587\u672c\u6807\u7b7e\u7684 x \u8f74\u4f4d\u7f6e\uff0c\u7ed8\u56fe\u533a\u57df x \u8f74\u9650\u5236\u7684\u5e73\u5747\u503c\u4f5c\u4e3a\u4f4d\u7f6e<\/p>\n

y = 0.5, #\u6587\u672c\u6807\u7b7e\u7684 y \u8f74\u4f4d\u7f6e\u8bbe\u5b9a\u4e3a 0.5\uff0c\u6307\u5b9a\u4e86\u8f68\u9053\u7684\u4e2d\u5fc3\u4f4d\u7f6e<\/p>\n

col = “white”,#\u672c\u6807\u7b7e\u7684\u989c\u8272\u8bbe\u5b9a\u4e3a\u767d\u8272<\/p>\n

labels = sector.index, #\u5c06\u533a\u5757\u7684\u7d22\u5f15\u6216\u6807\u7b7e\u4f5c\u4e3a\u6807\u7b7e\u6dfb\u52a0\u5230\u56fe\u4e0a<\/p>\n

facing = “bending”, #\u8bbe\u5b9a\u4e86\u6587\u672c\u6807\u7b7e\u7684\u671d\u5411<\/p>\n

cex = 1,#\u6307\u5b9a\u4e86\u6587\u672c\u6807\u7b7e\u7684\u7f29\u653e\u6bd4\u4f8b<\/p>\n

niceFacing = TRUE#\u7528\u4e8e\u786e\u4fdd\u6587\u672c\u6807\u7b7e\u671d\u5411\u7684\u826f\u597d\u663e\u793a<\/p>\n

)<\/p>\n

}<\/p>\n

)<\/p>\n

<\/p>\n

\u4e0d\u8fc7\u5230\u8fd9\u6b65\u9aa4\uff0c\u6211\u4eec\u7684\u57fa\u7840\u56fe\u5f62\u5c31\u7ed8\u5236\u7684\u5dee\u4e0d\u591a\uff0c\u4e3a\u4e86\u8fdb\u4e00\u6b65\u590d\u73b0\u6587\u732e\u4e2d\uff0c\u6211\u4eec\u8fd8\u9700\u8981\u8fdb\u884c\u7ec6\u8282\u4e0a\u7684\u8c03\u6574\uff0c\u5c31\u662f\u7a81\u51fa\u663e\u793a Circos \u56fe\u4e2d\u7279\u5b9a\u533a\u5757\u7684\u90e8\u5206<\/p>\n

\u5c31\u9700\u8981\u7528highlight.sector()<\/p>\n

names(group[7:9])#\u83b7\u53d6 group \u53d8\u91cf\u4e2d\u7d22\u5f15\u4e3a7\u52309\u7684\u533a\u5757\u7684\u540d\u79f0<\/p>\n

i<-1<\/p>\n

\u6211\u4eec\u5148\u8c03\u7528\u5b8c\u4e0a\u9762\u7684\u5206\u7ec4\uff0c\u7136\u540e\u8fdb\u884c\u7ed8\u5236<\/p>\n

\u8fd9\u91cc\u5c31\u5206\u4e09\u4e2a\u6a21\u5757\u8fdb\u884c\u4e86\u7ed8\u5236\uff0c\u539f\u7406\u90fd\u4e00\u6837\uff0c\u6240\u4ee5\u5c31\u4e00\u8d77\u7ed8\u5236\u4e86\uff1a<\/p>\n

##highlight.sector() \u51fd\u6570\u5728 Circos \u56fe\u7684\u7279\u5b9a\u8f68\u9053\u4e0a\u7a81\u51fa\u663e\u793a\u4e0d\u540c\u7ec4\u7684\u533a\u5757<\/p>\n

highlight.sector(names(group[7:9]),<\/p>\n

track.index = 1, #\u6307\u5b9a\u4e86\u8f68\u9053\u7d22\u5f15<\/p>\n

facing = “bending”, #\u63a7\u5236\u4e86\u6587\u672c\u6807\u7b7e\u7684\u671d\u5411<\/p>\n

font = 2,<\/p>\n

col = ifelse(i == 1, “#E6AE48FF”, “#E6AE483a”),#\u8bbe\u7f6e\u533a\u5757\u989c\u8272<\/p>\n

border = ifelse(i == 1, TRUE, FALSE), #\u63a7\u5236\u8fb9\u6846\u662f\u5426\u663e\u793a<\/p>\n

lwd = ifelse(i == 1, 2, 0.01),#\u63a7\u5236\u8fb9\u6846\u7684\u7ebf\u5bbd<\/p>\n

text = “tropical”,<\/p>\n

cex = 1.5, #\u6587\u672c\u7f29\u653e\u6bd4\u4f8b<\/p>\n

text.col = “white”, ##\u6587\u672c\u989c\u8272<\/p>\n

niceFacing = TRUE)#\u786e\u4fdd\u6587\u672c\u6807\u7b7e\u671d\u5411\u826f\u597d\u663e\u793a<\/p>\n

<\/p>\n

\u4ee3\u7801\u4e2difelse\u6839\u636e\u6761\u4ef6\u9009\u62e9\u4e0d\u540c\u7684\u989c\u8272\u548c\u5c5e\u6027\u6765\u7a81\u51fa\u663e\u793a\u533a\u5757<\/p>\n

##highlight.sector() \u51fd\u6570\u5728 Circos \u56fe\u7684\u7279\u5b9a\u8f68\u9053\u4e0a\u7a81\u51fa\u663e\u793a\u4e0d\u540c\u7ec4\u7684\u533a\u5757<\/p>\n

highlight.sector(names(group[4:6]),<\/p>\n

track.index = 1, #\u6307\u5b9a\u4e86\u8f68\u9053\u7d22\u5f15<\/p>\n

facing = “bending”, #\u63a7\u5236\u4e86\u6587\u672c\u6807\u7b7e\u7684\u671d\u5411<\/p>\n

font = 2,<\/p>\n

border = ifelse(i == 2, TRUE, FALSE),#\u63a7\u5236\u8fb9\u6846\u662f\u5426\u663e\u793a<\/p>\n

lwd = ifelse(i == 2, 2, 0.01),#\u63a7\u5236\u8fb9\u6846\u7684\u7ebf\u5bbd<\/p>\n

col = ifelse(i == 2, “#20A486”, “#20A4863a”),#\u8bbe\u7f6e\u533a\u5757\u989c\u8272<\/p>\n

#\u663e\u793a\u7684\u6587\u672c<\/p>\n

text = “temperate”,<\/p>\n

cex = 1.5, #\u6587\u672c\u7f29\u653e\u6bd4\u4f8b<\/p>\n

text.col = “white”,#\u6587\u672c\u989c\u8272<\/p>\n

niceFacing = TRUE)#\u786e\u4fdd\u6587\u672c\u6807\u7b7e\u671d\u5411\u826f\u597d\u663e\u793a<\/p>\n

<\/p>\n

##highlight.sector() \u51fd\u6570\u5728 Circos \u56fe\u7684\u7279\u5b9a\u8f68\u9053\u4e0a\u7a81\u51fa\u663e\u793a\u4e0d\u540c\u7ec4\u7684\u533a\u5757<\/p>\n

highlight.sector(names(group[1:3]),<\/p>\n

track.index = 1,<\/p>\n

facing = “bending”,<\/p>\n

font = 2,<\/p>\n

col = ifelse(i == 3, “#472D7B”, “#472D7B3a”),<\/p>\n

border = ifelse(i == 3, TRUE, FALSE),<\/p>\n

lwd = ifelse(i == 3, 2, 0.01),<\/p>\n

text = “polar”,<\/p>\n

cex = 1.5,<\/p>\n

text.col = “white”,<\/p>\n

niceFacing = TRUE)<\/p>\n

}<\/p>\n

<\/p>\n

\u91cc\u9762\u7684\u5b57\u5c0f\u679c\u90fd\u6309\u7167\u6587\u732e\u4e2d\u7684\u5185\u5bb9\u8fdb\u884c\u4e86\u590d\u73b0\uff0c<\/p>\n

\u5230\u73b0\u5728\u6211\u4eec\u7684\u7ed8\u5236\u5c31\u5b8c\u6210\u4e86\uff0c\u4e0a\u8ff0\u5185\u5bb9\u9664\u4e86\u6570\u636e\u548c\u989c\u8272\u6709\u4e00\u70b9\u4e0d\u4e00\u6837\uff0c\u5c0f\u4f19\u4f34\u53ef\u4ee5\u6309\u7167\u81ea\u5df1\u7684\u559c\u7231\u53bb\u8bbe\u7f6e\uff0c\u8bb0\u5f97\u591a\u591a\u7406\u89e3\u4ee3\u7801\u7684\u610f\u601d\uff0c\u8fd9\u6837\u624d\u53ef\u4ee5\u7ed8\u5236\u51fa\u81ea\u5df1\u60f3\u8981\u7684\u56fe\u5f62\uff0c\u5feb\u53bb\u52a8\u624b\u8bd5\u8bd5\u5427\uff01\uff01<\/p>\n

\u6700\u540e\u5462\uff0c\u5c0f\u679c\u7ed9\u5c0f\u4f19\u4f34\u5e26\u4e2a\u5c0f\u798f\u5229\uff0c\u5982\u679c\u5c0f\u4f19\u4f34\u89c9\u5f97\u81ea\u5df1\u8fd0\u884c\u4ee3\u7801\u592a\u9ebb\u70e6\uff0c\u53ef\u4ee5\u8bd5\u8bd5\u6211\u4eec\u7684\u4e91\u751f\u4fe1\u5c0f\u5de5\u5177\u54df\uff0c\u91cc\u9762\u6709\u6210\u719f\u7684\u4ee3\u7801\uff0c\u53ea\u8981\u8f93\u5165\u5408\u9002\u7684\u6570\u636e\u5c31\u53ef\u4ee5\u76f4\u63a5\u51fa\u60f3\u8981\u7684\u56fe\u5462\u3002\u8fd9\u662f\u6211\u4eec\u7684\u7f51\u5740http:\/\/www.biocloudservice.com\/home.html<\/a><\/p>\n

\u591a\u591a\u5173\u6ce8\u6211\u4eec\u516c\u4f17\u53f7\uff0c\u4e00\u6765\u5b66\u751f\u4fe1\uff01<\/p>\n","protected":false},"excerpt":{"rendered":"

\u5728\u79d1\u5b66\u7814\u7a76\u4e2d\uff0c\u6570\u636e\u53ef\u89c6\u5316\u662f\u5c55\u793a\u7814\u7a76\u6210\u679c\u5e76\u4f20\u9012\u4fe1\u606f\u7684\u91cd\u8981\u65b9\u5f0f\u3002\u5176\u4e2d\uff0cChord\u56fe\u4ee5\u5176\u72ec\u7279\u7684\u89c6\u89c9\u6548\u679c\u548c\u5f3a\u5927\u7684\u4fe1\u606f\u4f20 […]<\/p>\n","protected":false},"author":1,"featured_media":0,"comment_status":"closed","ping_status":"closed","sticky":false,"template":"","format":"standard","meta":{"jetpack_post_was_ever_published":false,"_jetpack_newsletter_access":""},"categories":[1],"tags":[],"jetpack_featured_media_url":"","_links":{"self":[{"href":"http:\/\/www.biocloudservice.com\/wordpress\/index.php?rest_route=\/wp\/v2\/posts\/28052"}],"collection":[{"href":"http:\/\/www.biocloudservice.com\/wordpress\/index.php?rest_route=\/wp\/v2\/posts"}],"about":[{"href":"http:\/\/www.biocloudservice.com\/wordpress\/index.php?rest_route=\/wp\/v2\/types\/post"}],"author":[{"embeddable":true,"href":"http:\/\/www.biocloudservice.com\/wordpress\/index.php?rest_route=\/wp\/v2\/users\/1"}],"replies":[{"embeddable":true,"href":"http:\/\/www.biocloudservice.com\/wordpress\/index.php?rest_route=%2Fwp%2Fv2%2Fcomments&post=28052"}],"version-history":[{"count":1,"href":"http:\/\/www.biocloudservice.com\/wordpress\/index.php?rest_route=\/wp\/v2\/posts\/28052\/revisions"}],"predecessor-version":[{"id":28060,"href":"http:\/\/www.biocloudservice.com\/wordpress\/index.php?rest_route=\/wp\/v2\/posts\/28052\/revisions\/28060"}],"wp:attachment":[{"href":"http:\/\/www.biocloudservice.com\/wordpress\/index.php?rest_route=%2Fwp%2Fv2%2Fmedia&parent=28052"}],"wp:term":[{"taxonomy":"category","embeddable":true,"href":"http:\/\/www.biocloudservice.com\/wordpress\/index.php?rest_route=%2Fwp%2Fv2%2Fcategories&post=28052"},{"taxonomy":"post_tag","embeddable":true,"href":"http:\/\/www.biocloudservice.com\/wordpress\/index.php?rest_route=%2Fwp%2Fv2%2Ftags&post=28052"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}