http:\/\/221.229.212.4:8760\/<\/a>\uff0c\u5c31\u53ef\u4ee5\u51fa\u73b0\u767b\u5f55\u754c\u9762\u3002<\/p>\n![\"Dingtalk_20230204110110\"](\"https:\/\/i0.wp.com\/www.biocloudservice.com\/wordpress\/wp-content\/uploads\/2024\/02\/dingtalk_20230204110110.jpeg?resize=640%2C506\")
<\/p>\n
\u8f93\u5165\u670d\u52a1\u5668\u7528\u6237\u540d\u548c\u5bc6\u7801\u5c31\u53ef\u4ee5\u767b\u5f55\u7f51\u9875\u7248\u7684RStudio\uff0c\u754c\u9762\u5982\u4e0b\uff1a<\/p>\n
![\"Dingtalk_20230204110514\"](\"https:\/\/i0.wp.com\/www.biocloudservice.com\/wordpress\/wp-content\/uploads\/2024\/02\/dingtalk_20230204110514.jpeg?resize=640%2C254\")
<\/p>\n
3\u5bfc\u5165\u6570\u636e<\/p>\n
\u7b2c\u4e00\u79cd\u65b9\u6cd5\u901a\u8fc7\u7edd\u5bf9\u8def\u5f84\u8bfb\u53d6<\/p>\n
tmp<-read.table(\u201c\/media\/desk16\/wangd\/GSEA_pathway.txt\u201d,header=T)<\/p>\n
\u7b2c\u4e8c\u79cd\u65b9\u6cd5\u901a\u8fc7\u6240\u5728\u7684\u8def\u5f84\u521b\u5efa\u9879\u76ee\uff0c\u5982\u4e0b\u9762\u56fe\u7247\u6240\u793a\uff1a<\/p>\n
![\"Dingtalk_20230204121534\"](\"https:\/\/i0.wp.com\/www.biocloudservice.com\/wordpress\/wp-content\/uploads\/2024\/02\/dingtalk_20230204121534.jpeg?resize=640%2C215\")
<\/p>\n
#\u901a\u8fc7\u70b9\u51fbNew Project\u6765\u521b\u5efa\uff0c\u5982\u679c\u5b58\u5728\u53ef\u4ee5\u76f4\u63a5\u70b9\u51fbOPen Project,\u521b\u5efa\u6210\u529f\u540e\u76f4\u63a5\u8bfb\u53d6\u6570\u636e\u5c31\u53ef\u4ee5\uff0c\u4e0d\u9700\u8981\u8f93\u5165\u7edd\u5bf9\u8def\u5f84\u3002<\/p>\n
#\u6570\u636e\u5bfc\u5165\u6210\u529f\u540e\uff0c\u53ef\u4ee5\u901a\u8fc7\u70b9\u51fb\u6587\u4ef6\u53d8\u91cf\u540d(tmp)\u67e5\u770b\u6570\u636e\u3002<\/p>\n
![\"Dingtalk_20230204123643\"](\"https:\/\/i0.wp.com\/www.biocloudservice.com\/wordpress\/wp-content\/uploads\/2024\/02\/dingtalk_20230204123643.jpeg?resize=640%2C133\")
<\/p>\n
4.\u4ee3\u7801\u5c55\u793a<\/p>\n
#\u5bfc\u5165\u9700\u8981\u7684R\u5305<\/p>\n
library(ggplot2)<\/p>\n
library(tidyverse)<\/p>\n
library(ComplexHeatmap)<\/p>\n
# \u8bbe\u7f6e\u989c\u8272<\/p>\n
darkblue <- “#303B7F”<\/p>\n
darkred <- “#D51113”<\/p>\n
yellow <- “#EECA1F”<\/p>\n
#\u8bfb\u53d6\u6570\u636e<\/p>\n
tmp<-read.table(“\/media\/desk16\/wangd\/GSEA_pathway.txt”,header=T)<\/p>\n
my_palette <- colorRampPalette(c(darkblue,yellow,darkred), alpha=TRUE)(n=128)<\/p>\n
ggplot(tmp, aes(x=tumor,y=gene)) +<\/p>\n
geom_point(aes(size=-log10(FDR),color=NES)) +<\/p>\n
scale_color_gradientn(‘NES’,<\/p>\n
colors=my_palette) +<\/p>\n
scale_size_continuous(range = c(1,4)) + #\u5706\u70b9\u7684\u5927\u5c0f\u8303\u56f4<\/p>\n
theme_bw() +<\/p>\n
theme(panel.grid.minor = element_blank(),<\/p>\n
panel.grid.major = element_blank(),<\/p>\n
axis.text.x = element_text(angle = 45, size = 12, hjust = 0.3, vjust = 0.5, color = “black”),<\/p>\n
axis.text.y = element_text(size = 10, color = “black”),<\/p>\n
axis.title = element_blank(),<\/p>\n
panel.border = element_rect(size = 0.7, linetype = “solid”, colour = “black”),<\/p>\n
legend.position = “bottom”,<\/p>\n
plot.margin = unit(c(1,1,1,1), “lines”))<\/p>\n
#\u4fdd\u5b58\u56fe\u7247<\/p>\n
ggsave(paste0(“GSEA_regarding_”,”pathOfInterest”,”_in_pancancer.pdf”), width = 8,height = 6)<\/p>\n
#\u5728\u4ee3\u7801\u6846\u91cc\u9762\u8f93\u5165\u4e0a\u9762\u4ee3\u7801\uff0c\u7136\u540e\u70b9\u51fbRun\u8fd0\u884c\u5c31\u53ef\u4ee5\uff0c\u5982\u4e0b\u56fe\u6240\u793a\uff1a<\/p>\n
![\"Dingtalk_20230204122259\"](\"https:\/\/i0.wp.com\/www.biocloudservice.com\/wordpress\/wp-content\/uploads\/2024\/02\/dingtalk_20230204122259.jpeg?resize=640%2C318\")
<\/p>\n
#\u6700\u7ec8\u4f1a\u5728\u8be5\u8def\u5f84\u751f\u6210\u7ed3\u679c\u56fe\u7247\uff0c\u4e5f\u53ef\u4ee5\u901a\u8fc7\u70b9\u51fbExport\u9009\u62e9\u9700\u8981\u7684\u56fe\u7247\u683c\u5f0f\u3002<\/p>\n
![\"Dingtalk_20230204123046\"](\"https:\/\/i0.wp.com\/www.biocloudservice.com\/wordpress\/wp-content\/uploads\/2024\/02\/dingtalk_20230204123046.jpeg?resize=640%2C223\")
<\/p>\n
#\u6700\u7ec8\u751f\u6210\u7684\u56fe\u7247\u5982\u4e0b\uff1a<\/p>\n
![\"Dingtalk_20230204123337\"](\"https:\/\/i0.wp.com\/www.biocloudservice.com\/wordpress\/wp-content\/uploads\/2024\/02\/dingtalk_20230204123337.jpeg?resize=640%2C461\")
<\/p>\n","protected":false},"excerpt":{"rendered":"
\u4eca\u5929\u5c0f\u679c\u901a\u8fc7Rstudio\u6765\u7ed8\u5236\u6ce1\u6ce1\u56fe\uff0c\u6211\u662f\u901a\u8fc7\u7f51\u9875\u7248\u7684Rstudio\u7ed8\u56fe\u6b65\u9aa4\u5982\u4e0b\uff1a \u767b\u5f55\u7f51\u9875\u7248\u7684Rstudi […]<\/p>\n","protected":false},"author":1,"featured_media":0,"comment_status":"closed","ping_status":"closed","sticky":false,"template":"","format":"standard","meta":{"jetpack_post_was_ever_published":false,"_jetpack_newsletter_access":""},"categories":[1],"tags":[],"jetpack_featured_media_url":"","_links":{"self":[{"href":"http:\/\/www.biocloudservice.com\/wordpress\/index.php?rest_route=\/wp\/v2\/posts\/28864"}],"collection":[{"href":"http:\/\/www.biocloudservice.com\/wordpress\/index.php?rest_route=\/wp\/v2\/posts"}],"about":[{"href":"http:\/\/www.biocloudservice.com\/wordpress\/index.php?rest_route=\/wp\/v2\/types\/post"}],"author":[{"embeddable":true,"href":"http:\/\/www.biocloudservice.com\/wordpress\/index.php?rest_route=\/wp\/v2\/users\/1"}],"replies":[{"embeddable":true,"href":"http:\/\/www.biocloudservice.com\/wordpress\/index.php?rest_route=%2Fwp%2Fv2%2Fcomments&post=28864"}],"version-history":[{"count":1,"href":"http:\/\/www.biocloudservice.com\/wordpress\/index.php?rest_route=\/wp\/v2\/posts\/28864\/revisions"}],"predecessor-version":[{"id":28872,"href":"http:\/\/www.biocloudservice.com\/wordpress\/index.php?rest_route=\/wp\/v2\/posts\/28864\/revisions\/28872"}],"wp:attachment":[{"href":"http:\/\/www.biocloudservice.com\/wordpress\/index.php?rest_route=%2Fwp%2Fv2%2Fmedia&parent=28864"}],"wp:term":[{"taxonomy":"category","embeddable":true,"href":"http:\/\/www.biocloudservice.com\/wordpress\/index.php?rest_route=%2Fwp%2Fv2%2Fcategories&post=28864"},{"taxonomy":"post_tag","embeddable":true,"href":"http:\/\/www.biocloudservice.com\/wordpress\/index.php?rest_route=%2Fwp%2Fv2%2Ftags&post=28864"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}