{"id":29970,"date":"2024-02-27T17:47:51","date_gmt":"2024-02-27T09:47:51","guid":{"rendered":"http:\/\/www.biocloudservice.com\/wordpress\/?p=29970"},"modified":"2024-02-27T17:47:52","modified_gmt":"2024-02-27T09:47:52","slug":"%e5%bd%93%e5%b0%8f%e7%99%bd%e4%b8%80%e6%ac%a1%e6%80%a7%e5%ae%89%e8%a3%855%e4%b8%aar%e5%8c%85%e5%90%8e%ef%bc%8c%e5%a4%b4%e5%8f%91%e7%a7%83%e4%ba%86%ef%bc%81%e7%9c%8b%e6%88%91%e6%98%af%e5%a6%82-2","status":"publish","type":"post","link":"http:\/\/www.biocloudservice.com\/wordpress\/?p=29970","title":{"rendered":"\u5f53\u5c0f\u767d\u4e00\u6b21\u6027\u5b89\u88c55\u4e2aR\u5305\u540e\uff0c\u5934\u53d1\u79c3\u4e86\uff01\u770b\u6211\u662f\u5982\u4f55\u5b89\u88c5\u7684\uff08\u4e8c\uff09"},"content":{"rendered":"

\u5f53\u5c0f\u767d\u4e00\u6b21\u6027\u5b89\u88c55\u4e2aR\u5305\u540e\uff0c\u5934\u53d1\u79c3\u4e86\uff01\u770b\u6211\u662f\u5982\u4f55\u5b89\u88c5\u7684\uff08\u4e8c\uff09<\/strong><\/p>\n

\u4e0a\u671f\u5c0f\u679c\u5206\u4eab\u4e86\u4f5c\u4e3a\u4e00\u540d\u65b0\u624b\u662f\u5982\u4f55\u5728Windows\u4e0b\u5b89\u88c55\u4e2aR\u5305\u7684\uff0c\u8fd9\u4e00\u671f\u5206\u4eab\u5728Ubuntu\u7cfb\u7edf\u4e0b\u7684\u64cd\u4f5c\uff0c\u4ecd\u65e7\u662f\u6389\u4e86\u5f88\u591a\u6839\u5934\u53d1\u7684\u5c0f\u679c\u3002<\/p>\n

\u5c0f\u679c\u7528\u5230\u7684Ubuntu\u7248\u672c\u4e3aUbuntu 22.04.2 LTS\u3002<\/p>\n

\u5982\u679c\u524d\u4e24\u6b65\u4f60\u5df2\u7ecf\u5b8c\u6210\u53ef\u4ee5\u76f4\u63a5\u8df3\u8fc7\u54e6\u3002<\/p>\n

    \n
  1. \u5b89\u88c5R<\/li>\n<\/ol>\n

    \u53ef\u4ee5\u6839\u636e\uff08http:\/\/cran.rstudio.com\/bin\/linux\/ubuntu\/<\/a>\uff09\u5b8c\u6210R\u7684\u5b89\u88c5,\u5982\u679c\u61d2\u5f97\u770b\u5c31\u770b\u5c0f\u679c\u6574\u7406\u7684\u5427\u2193\u3002<\/p>\n

    # \u66f4\u65b0Ubuntu\u7cfb\u7edf\u8f6f\u4ef6\u5305\u5217\u8868s<\/p>\n

    sudo apt update -qq<\/p>\n

    <\/p>\n

    # \u5b89\u88c5\u4e24\u4e2a\u6709\u7528\u7684\u8f6f\u4ef6\u5305\uff0csoftware-properties-common \u4e3aUbuntu\u7cfb\u7edf\u63d0\u4f9b\u4e86\u5e38\u89c1\u7684\u8f6f\u4ef6\u6e90\u7ba1\u7406\u5de5\u5177 add-apt-repository\uff0c\u8fd9\u4e2a\u5de5\u5177\u53ef\u4ee5\u65b9\u4fbf\u7684\u6dfb\u52a0\u548c\u5220\u9664\u7cfb\u7edf\u4e2d\u7684\u8f6f\u4ef6\u6e90\u3002dirmngr \u662fGnuPG\u7684\u4e00\u4e2a\u5de5\u5177\uff0c\u63d0\u4f9b\u4e86\u4e00\u4e9b\u516c\u94a5\u7ba1\u7406\u529f\u80fd\uff0c\u5305\u62ec\u68c0\u7d22\u3001\u4e0b\u8f7d\u3001\u9a8c\u8bc1\u3001\u9881\u53d1\u8bc1\u4e66\u7b49\u3002<\/p>\n

    sudo apt install –no-install-recommends software-properties-common dirmngr<\/p>\n

    \"\u6587\u672c\n\n\u63cf\u8ff0\u5df2\u81ea\u52a8\u751f\u6210\"<\/p>\n

    # \u4eceCRAN\u955c\u50cf\u7ad9\u70b9\u4e0b\u8f7d\u5bc6\u94a5\u5e76\u5c06\u5176\u6dfb\u52a0\u5230Ubuntu\u7cfb\u7edf\u7684\u53d7\u4fe1\u4efb\u5bc6\u94a5\u5217\u8868\u4e2d\u3002\u8fd9\u53ef\u4ee5\u786e\u4fdd\u5b89\u88c5\u7684R\u5305\u548cR\u8f6f\u4ef6\u672c\u8eab\u6765\u81ea\u53ef\u4fe1\u6e90\u3002<\/p>\n

    wget -qO- https:\/\/cloud.r-project.org\/bin\/linux\/ubuntu\/marutter_pubkey.asc | sudo tee -a \/etc\/apt\/trusted.gpg.d\/cran_ubuntu_key.asc<\/p>\n

    \"\u6587\u672c\n\n\u63cf\u8ff0\u5df2\u81ea\u52a8\u751f\u6210\"<\/p>\n

    # \u8fd9\u4e2a\u547d\u4ee4\u4f1a\u5c06 CRAN (The Comprehensive R Archive Network) \u7684\u6e90\u6dfb\u52a0\u5230\u4f60\u7684 Ubuntu \u7cfb\u7edf\u4e2d\u3002\u6839\u636e\u4f60\u7684 Ubuntu \u7248\u672c\uff0c\u8fd9\u4e2a\u547d\u4ee4\u4f1a\u81ea\u52a8\u6dfb\u52a0\u6b63\u786e\u7684\u6e90\u3002<\/p>\n

    sudo add-apt-repository “deb https:\/\/cloud.r-project.org\/bin\/linux\/ubuntu $(lsb_release -cs)-cran40\/”<\/p>\n

    <\/p>\n

    # \u4f7f\u7528apt\u5305\u7ba1\u7406\u5668\u5b89\u88c5R\u8bed\u8a00\u5e76\u8df3\u8fc7\u5b89\u88c5\u63a8\u8350\u7684\u8f6f\u4ef6\u5305<\/p>\n

    sudo apt install –no-install-recommends r-base<\/p>\n

    <\/p>\n

    \u5b89\u88c5\u540e\u53ef\u4ee5\u5728\u7ec8\u7aef\u8f93\u5165R\uff0c\u6ca1\u6709\u62a5\u9519\u5c31\u662f\u6210\u529f\u4e86\u3002<\/p>\n

      \n
    1. \u5b89\u88c5Rstudio<\/li>\n<\/ol>\n

      #\u5b89\u88c5gdebi-core\u8f6f\u4ef6\u5305\uff0c\u5b83\u662f Ubuntu \u7cfb\u7edf\u4e0a\u4e00\u4e2a\u7528\u4e8e\u5b89\u88c5 .deb \u8f6f\u4ef6\u5305\u7684\u5de5\u5177\u3002<\/p>\n

      sudo apt-get in stall gdebi-core<\/p>\n

      \"\u6587\u672c\n\n\u63cf\u8ff0\u5df2\u81ea\u52a8\u751f\u6210\"<\/p>\n

      #\u4e0b\u8f7dRStudio\u7684.deb\u5b89\u88c5\u5305<\/p>\n

      wget https:\/\/download1.rstudio.org\/electron\/jammy\/amd64\/rstudio-2023.03.0-386-amd64.deb<\/a><\/p>\n

      <\/p>\n

      #\u5b89\u88c5<\/p>\n

      sudo gdebi rstudio-2023.03.0-386-amd64.deb<\/p>\n

      <\/p>\n

      \u5b8c\u6210\u540e\u76f4\u63a5\u8f93\u5165Rstudio\u5c31\u53ef\u4ee5\u8fd0\u884c\u4e86\uff0c\u4e5f\u53ef\u4ee5\u5728\u529f\u80fd\u533a\u627e\u5230\u5b83\u7684\u56fe\u6807\u6dfb\u52a0\u5230\u684c\u9762\u4e0a\uff0c\u76f4\u63a5\u6253\u5f00\u3002<\/p>\n

      <\/p>\n

        \n
      1. \u5b89\u88c5\u6211\u4eec\u9700\u8981\u7684R\u5305<\/li>\n<\/ol>\n

        # \u5b89\u88c5 R \u8bed\u8a00\u4e2d\u7684 devtools \u5305\uff0c\u5b83\u5305\u542b\u4e86\u8bb8\u591a\u7528\u4e8e\u5305\u5f00\u53d1\u548c\u8c03\u8bd5\u7684\u5de5\u5177\uff0c\u6bd4\u5982\u8bf4\u5b89\u88c5 GitHub \u4e0a\u7684 R \u5305\u3001\u6784\u5efa R \u5305\u3001\u68c0\u67e5 R \u5305\u3001\u6d4b\u8bd5 R \u5305\u7b49\u7b49\u3002<\/p>\n

        install.packages(“devtools”)<\/p>\n

        \u6210\u529f\u540e\u5982\u56fe\uff1a<\/p>\n

        <\/p>\n

        # \u4f7f\u7528 require \u51fd\u6570\u68c0\u67e5\u662f\u5426\u5df2\u7ecf\u5b89\u88c5\u4e86 BiocManager \u5305\uff0c\u5982\u679c\u6ca1\u6709\u5219\u4f7f\u7528 install.packages \u51fd\u6570\u5b89\u88c5\u5b83<\/p>\n

        if (!require(“BiocManager”, quietly = TRUE))<\/p>\n

        install.packages(“BiocManager”)<\/p>\n

        BiocManager::install(“survcomp”)<\/p>\n

        # \u540c\u65f6\u5b89\u88c53\u4e2a\u5305\u3002Hmisc \u5305\u63d0\u4f9b\u4e86\u4e00\u4e9b\u7528\u4e8e\u6570\u636e\u6e05\u6d17\u3001\u63cf\u8ff0\u6027\u7edf\u8ba1\u3001\u53ef\u89c6\u5316\u548c\u5efa\u6a21\u7b49\u65b9\u9762\u7684\u51fd\u6570\uff0c\u662f\u4e00\u4e2a\u5e38\u7528\u7684\u6570\u636e\u79d1\u5b66\u5305\u3002<\/p>\n

        survival \u5305\u662f\u4e00\u4e2a\u7528\u4e8e\u751f\u5b58\u5206\u6790\u7684\u6838\u5fc3\u5305\uff0c\u63d0\u4f9b\u4e86\u4e00\u7cfb\u5217\u7528\u4e8e\u5efa\u7acb\u3001\u62df\u5408\u548c\u8bc4\u4f30\u751f\u5b58\u5206\u6790\u6a21\u578b\u7684\u51fd\u6570\u548c\u5de5\u5177\u3002<\/p>\n

        survivalROC \u5305\u63d0\u4f9b\u4e86\u4e00\u4e9b\u7528\u4e8e\u8bc4\u4f30\u751f\u5b58\u5206\u6790\u6a21\u578b\u6027\u80fd\u7684\u51fd\u6570\uff0c\u4f8b\u5982\u8ba1\u7b97\u5404\u79cd ROC \u66f2\u7ebf\u6307\u6807\u3001\u7ed8\u5236 ROC \u66f2\u7ebf\u7b49\u7b49\u3002<\/p>\n

        install.packages(c(“Hmisc”, “survival”, “survivalROC”))<\/p>\n

        \u6210\u529f\u540e\u5982\u56fe\uff1a<\/p>\n

        <\/p>\n

        # \u5b89\u88c5CoxBoost\u5305<\/p>\n

        library(devtools)<\/p>\n

        install_github(“binderh\/CoxBoost”)<\/p>\n

        \u6210\u529f\u540e\u5982\u56fe\uff1a<\/p>\n

        \"\u56fe\u5f62\u7528\u6237\u754c\u9762,<\/p>\n

        \u7528library\u8f7d\u5165\u8bd5\u8bd5\uff1a<\/p>\n

        \"\u6587\u672c\n\n\u63cf\u8ff0\u5df2\u81ea\u52a8\u751f\u6210\"<\/p>\n

        \u6b64\u90e8\u5206\u4e0ewindows\u7cfb\u7edf\u7684\u64cd\u4f5c\u5dee\u4e0d\u591a\uff0c\u53ea\u662f\u4e0d\u7528\u5b89\u88c5Rtools<\/p>\n

        \u597d\u5566\uff0c\u4eca\u5929\u7684\u5206\u4eab\u5230\u6b64\u7ed3\u675f\uff0c\u4e0b\u6b21\u5206\u4eab\u5982\u4f55\u7528\u5df2\u5b89\u88c5\u7684R\u5305\u8fdb\u884c\u673a\u5668\u5b66\u4e60~<\/p>\n","protected":false},"excerpt":{"rendered":"

        \u5f53\u5c0f\u767d\u4e00\u6b21\u6027\u5b89\u88c55\u4e2aR\u5305\u540e\uff0c\u5934\u53d1\u79c3\u4e86\uff01\u770b\u6211\u662f\u5982\u4f55\u5b89\u88c5\u7684\uff08\u4e8c\uff09 \u4e0a\u671f\u5c0f\u679c\u5206\u4eab\u4e86\u4f5c\u4e3a\u4e00\u540d\u65b0\u624b\u662f\u5982\u4f55\u5728Windows […]<\/p>\n","protected":false},"author":1,"featured_media":0,"comment_status":"closed","ping_status":"closed","sticky":false,"template":"","format":"standard","meta":{"jetpack_post_was_ever_published":false,"_jetpack_newsletter_access":""},"categories":[1],"tags":[],"jetpack_featured_media_url":"","_links":{"self":[{"href":"http:\/\/www.biocloudservice.com\/wordpress\/index.php?rest_route=\/wp\/v2\/posts\/29970"}],"collection":[{"href":"http:\/\/www.biocloudservice.com\/wordpress\/index.php?rest_route=\/wp\/v2\/posts"}],"about":[{"href":"http:\/\/www.biocloudservice.com\/wordpress\/index.php?rest_route=\/wp\/v2\/types\/post"}],"author":[{"embeddable":true,"href":"http:\/\/www.biocloudservice.com\/wordpress\/index.php?rest_route=\/wp\/v2\/users\/1"}],"replies":[{"embeddable":true,"href":"http:\/\/www.biocloudservice.com\/wordpress\/index.php?rest_route=%2Fwp%2Fv2%2Fcomments&post=29970"}],"version-history":[{"count":1,"href":"http:\/\/www.biocloudservice.com\/wordpress\/index.php?rest_route=\/wp\/v2\/posts\/29970\/revisions"}],"predecessor-version":[{"id":29984,"href":"http:\/\/www.biocloudservice.com\/wordpress\/index.php?rest_route=\/wp\/v2\/posts\/29970\/revisions\/29984"}],"wp:attachment":[{"href":"http:\/\/www.biocloudservice.com\/wordpress\/index.php?rest_route=%2Fwp%2Fv2%2Fmedia&parent=29970"}],"wp:term":[{"taxonomy":"category","embeddable":true,"href":"http:\/\/www.biocloudservice.com\/wordpress\/index.php?rest_route=%2Fwp%2Fv2%2Fcategories&post=29970"},{"taxonomy":"post_tag","embeddable":true,"href":"http:\/\/www.biocloudservice.com\/wordpress\/index.php?rest_route=%2Fwp%2Fv2%2Ftags&post=29970"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}