{"id":30212,"date":"2024-02-28T18:11:15","date_gmt":"2024-02-28T10:11:15","guid":{"rendered":"http:\/\/www.biocloudservice.com\/wordpress\/?p=30212"},"modified":"2024-02-28T18:11:16","modified_gmt":"2024-02-28T10:11:16","slug":"%e5%b0%8f%e6%9e%9c%e6%89%8b%e6%8a%8a%e6%89%8b%e6%95%99%e4%bd%a0%e7%94%a8miniconda%e5%ae%89%e8%a3%85edta%ef%bc%88%e4%b8%8a%ef%bc%89","status":"publish","type":"post","link":"http:\/\/www.biocloudservice.com\/wordpress\/?p=30212","title":{"rendered":"\u5c0f\u679c\u624b\u628a\u624b\u6559\u4f60\u7528miniconda\u5b89\u88c5EDTA\uff08\u4e0a\uff09"},"content":{"rendered":"

<\/a> \u5c0f\u679c\u624b\u628a\u624b\u6559\u4f60\u7528miniconda\u5b89\u88c5EDTA\uff08\u4e0a\uff09<\/p>\n

\u4eca\u5929\u5c0f\u679c\u60f3\u8981\u5b66\u4e60\u7528EDTA\uff08Extensive de-novo TE Annotator\uff09\u8fdb\u884c\u91cd\u590d\u5e8f\u5217\u6ce8\u91ca\uff0c\u5728\u6ce8\u91ca\u4e4b\u524d\u9700\u8981\u5148\u5b89\u88c5\uff0c\u5c0f\u679c\u662f\u5229\u7528miniconda\u8fdb\u884c\u5b89\u88c5\u7684\uff0c\u7ecf\u8fc7\u4e00\u756a\u52aa\u529b\u540e\u7ec8\u4e8e\u5b89\u88c5\u6210\u529f\u4e86\uff01\u8ba9\u6211\u4eec\u770b\u770b\u5b89\u88c5\u6b65\u9aa4\u5982\u4f55\u5427\uff1a<\/p>\n

    \n
  1. \u4e0b\u8f7dminiconda\u5b89\u88c5\u5305<\/li>\n<\/ol>\n

    \u5b98\u7f51\uff1aMiniconda \u2014 conda documentation<\/a><\/p>\n

    \u5317\u5916\u955c\u50cf\uff1aIndex of \/anaconda\/miniconda\/ | \u5317\u4eac\u5916\u56fd\u8bed\u5927\u5b66\u5f00\u6e90\u8f6f\u4ef6\u955c\u50cf\u7ad9 | BFSU Open Source Mirror<\/a><\/p>\n

    \u6ce8\u610f\u8981\u9009\u62e9\u9002\u5408\u81ea\u5df1\u7684\u7248\u672c\u54e6\u3002<\/p>\n

    wget -c https:\/\/repo.anaconda.com\/miniconda\/Miniconda3-py310_23.1.0-1-Linux-x86_64.sh<\/p>\n

    wget -c https:\/\/repo.anaconda.com\/miniconda\/Miniconda3-latest-Linux-x86_64.sh<\/p>\n

    \u4e0b\u8f7d\u5b8c\u5b89\u88c5\u6587\u4ef6\u5c31\u53ef\u4ee5\u5f00\u59cb\u5b89\u88c5\u4e86\uff01<\/p>\n

    \u5728\u6587\u4ef6\u7684\u4e0b\u8f7d\u76ee\u5f55\u4e0b\u76f4\u63a5\u8f93\u5165\uff1a<\/p>\n

    bash Miniconda3-latest-Linux-x86_64.sh<\/p>\n

    \u5728\u8fd9\u4e00\u8fc7\u7a0b\u4e2d\u4f1a\u51fa\u73b0\u9605\u8bfblicense\u7684\u8bf7\u6c42\uff0c\u4e00\u76f4\u6309enter\u7ee7\u7eed\u6216\u8005q\u9000\u51fa\u90fd\u53ef\uff0c\u6700\u540e\u540c\u610f\u6761\u6b3e\uff0c\u8f93\u5165yes\u7ee7\u7eed<\/p>\n

    <\/p>\n

    <\/p>\n

    \u63a5\u7740\u4f1a\u51fa\u73b0\u9009\u62e9\u5b89\u88c5\u76ee\u5f55\uff0c\u53ef\u4ee5\u6309enter\u9ed8\u8ba4\u5b89\u88c5\u8def\u5f84\uff0c\u6216\u8005ctrl-c\u7ed3\u675f\u5b89\u88c5\uff0c\u6216\u8005\u76f4\u63a5\u8f93\u5165\u65b0\u7684\u5b89\u88c5\u8def\u5f84\u6539\u53d8\u5b89\u88c5\u4f4d\u7f6e\u3002<\/p>\n

    <\/p>\n

    \u7ee7\u7eedyes<\/p>\n

    <\/p>\n

    \u7ed3\u675f\u540e\u6d4b\u8bd5\u4e00\u4e0b\u5b89\u88c5\uff0c\u8f93\u5165conda list<\/p>\n

    <\/p>\n

    \u5440\uff0c\u5c0f\u679c\u53d1\u73b0conda\u547d\u4ee4\u65e0\u6cd5\u88ab\u627e\u5230\uff0c\u4e0d\u8981\u614c\uff0c\u53ef\u80fd\u662f\u56e0\u4e3aconda\u73af\u5883\u8def\u5f84\u6ca1\u6709\u88ab\u6b63\u786e\u5730\u6dfb\u52a0\u5230\u7cfb\u7edf\u7684\u73af\u5883\u53d8\u91cf\u4e2d\uff0c\u53ef\u4ee5\u8f93\u5165\u4ee5\u4e0b\u547d\u4ee4\u6765\u6dfb\u52a0\u73af\u5883\u53d8\u91cf\uff1a<\/p>\n

    export PATH=\uff02\/home\/hui\/miniconda3\/bin:$PATH\uff02<\/p>\n

    \u5176\u4e2d\/home\/hui\/miniconda3\/bin\u662f\u6211\u4eec\u7684miniconda\u5b89\u88c5\u8def\u5f84\uff0c\u5c0f\u53ef\u7231\u81ea\u884c\u4fee\u6539\u54e6\u3002<\/p>\n

    \u8f93\u5165echo $PATH\u6253\u5370\u51fa\u5f53\u524d\u7684PATH\u73af\u5883\u53d8\u91cf\u503c\uff0c\u68c0\u67e5\u662f\u5426\u6210\u529f\u5c06\u8def\u5f84\u6dfb\u52a0\u5230\u73af\u5883\u53d8\u91cf\u4e2d\uff0c\u53ef\u4ee5\u770b\u5230\u5176\u4e2d\u5df2\u7ecf\u5305\u542b\u4e86miniconda\u7684\u5b89\u88c5\u8def\u5f84<\/p>\n

    \"\u6587\u672c\n\n\u63cf\u8ff0\u5df2\u81ea\u52a8\u751f\u6210\"<\/p>\n

    \u518d\u6b21\u8f93\u5165conda list\uff0c\u6210\u529f~<\/p>\n

    <\/p>\n

    \u63a5\u4e0b\u6765\u6211\u4eec\u5b89\u88c5\u4e00\u4e0bconda\u7684channel\u65b9\u4fbf\u5b89\u88c5\u5404\u79cd\u5176\u5b83\u5b9e\u7528\u7684\u751f\u4fe1\u8f6f\u4ef6\u3002<\/p>\n

    \u8fd9\u91cc\u5b89\u88c5\u4e86\u4e24\u4e2achannel.<\/p>\n

    \u5b98\u65b9\uff1a<\/p>\n

    conda config –add channels bioconda<\/p>\n

    conda config –add channels conda-forge<\/p>\n

    \u955c\u50cf\uff1aconda config –add channels https:\/\/mirrors.tuna.tsinghua.edu.cn\/anaconda\/pkgs\/free\/<\/p>\n

    conda config –add channels https:\/\/mirrors.tuna.tsinghua.edu.cn\/anaconda\/pkgs\/main\/<\/p>\n

    conda config –add channels https:\/\/mirrors.tuna.tsinghua.edu.cn\/anaconda\/cloud\/conda-forge\/<\/p>\n

    conda config –set show_channel_urls yes<\/p>\n

    \u901a\u8fc7conda config –show channels\u67e5\u770b\u5f53\u524d\u5df2\u6dfb\u52a0\u7684conda channels\u5217\u8868\uff0c\u5982\u56fe\u6210\u529f\u5b89\u88c5\uff0c\u5176\u4e2ddefaults\u4e3a\u5b98\u65b9\u81ea\u5e26\u7684channel.<\/p>\n

    <\/p>\n

    \u6216\u8005\uff08\u955c\u50cf\uff09<\/p>\n

    <\/p>\n

    \u597d\u5566\uff0c\u63a5\u4e0b\u6765\u6211\u4eec\u5c31\u53ef\u4ee5\u5b89\u88c5EDTA\u4e86\uff01\u4e0b\u671f\u89c1~<\/p>\n

    \u5176\u4ed6\u5206\u6790\uff1a\u4e91\u751f\u4fe1 \u00a0– \u5b66\u751f\u7269\u4fe1\u606f\u5b66 (biocloudservice.com)<\/a><\/p>\n

    \u5982\u679c\u60f3\u7528\u670d\u52a1\u5668\u53ef\u4ee5\u8054\u7cfb\u5fae\u4fe1\uff1a18502195490<\/p>\n","protected":false},"excerpt":{"rendered":"

    \u5c0f\u679c\u624b\u628a\u624b\u6559\u4f60\u7528miniconda\u5b89\u88c5EDTA\uff08\u4e0a\uff09 \u4eca\u5929\u5c0f\u679c\u60f3\u8981\u5b66\u4e60\u7528EDTA\uff08Extensive de-n […]<\/p>\n","protected":false},"author":1,"featured_media":0,"comment_status":"closed","ping_status":"closed","sticky":false,"template":"","format":"standard","meta":{"jetpack_post_was_ever_published":false,"_jetpack_newsletter_access":""},"categories":[1],"tags":[],"jetpack_featured_media_url":"","_links":{"self":[{"href":"http:\/\/www.biocloudservice.com\/wordpress\/index.php?rest_route=\/wp\/v2\/posts\/30212"}],"collection":[{"href":"http:\/\/www.biocloudservice.com\/wordpress\/index.php?rest_route=\/wp\/v2\/posts"}],"about":[{"href":"http:\/\/www.biocloudservice.com\/wordpress\/index.php?rest_route=\/wp\/v2\/types\/post"}],"author":[{"embeddable":true,"href":"http:\/\/www.biocloudservice.com\/wordpress\/index.php?rest_route=\/wp\/v2\/users\/1"}],"replies":[{"embeddable":true,"href":"http:\/\/www.biocloudservice.com\/wordpress\/index.php?rest_route=%2Fwp%2Fv2%2Fcomments&post=30212"}],"version-history":[{"count":1,"href":"http:\/\/www.biocloudservice.com\/wordpress\/index.php?rest_route=\/wp\/v2\/posts\/30212\/revisions"}],"predecessor-version":[{"id":30222,"href":"http:\/\/www.biocloudservice.com\/wordpress\/index.php?rest_route=\/wp\/v2\/posts\/30212\/revisions\/30222"}],"wp:attachment":[{"href":"http:\/\/www.biocloudservice.com\/wordpress\/index.php?rest_route=%2Fwp%2Fv2%2Fmedia&parent=30212"}],"wp:term":[{"taxonomy":"category","embeddable":true,"href":"http:\/\/www.biocloudservice.com\/wordpress\/index.php?rest_route=%2Fwp%2Fv2%2Fcategories&post=30212"},{"taxonomy":"post_tag","embeddable":true,"href":"http:\/\/www.biocloudservice.com\/wordpress\/index.php?rest_route=%2Fwp%2Fv2%2Ftags&post=30212"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}