{"id":48120,"date":"2024-06-15T20:08:03","date_gmt":"2024-06-15T12:08:03","guid":{"rendered":"http:\/\/www.biocloudservice.com\/wordpress\/?p=48120"},"modified":"2024-06-15T22:38:36","modified_gmt":"2024-06-15T14:38:36","slug":"%e7%ae%80%e5%8d%95%e9%ab%98%e6%95%88%e5%88%a9%e7%94%a8batch-entrez%e6%89%b9%e9%87%8f%e8%8e%b7%e5%8f%96%e5%9f%ba%e5%9b%a0%e5%88%ab%e5%90%8d-2","status":"publish","type":"post","link":"http:\/\/www.biocloudservice.com\/wordpress\/?p=48120","title":{"rendered":"\u7b80\u5355\u9ad8\u6548\u5229\u7528Batch Entrez\u6279\u91cf\u83b7\u53d6\u57fa\u56e0\u522b\u540d"},"content":{"rendered":"

\u539f\u521b\u00a0 <\/span>\u5c0f\u679c\u00a0\u00a0<\/span><\/a>\u751f\u4fe1\u679c\u00a0\u00a0<\/span>2023-01-12 19:00:14<\/em><\/p>\n

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\u6536\u5f55\u4e8e\u8bdd\u9898<\/p>\n

#\u5728\u7ebf\u5de5\u5177<\/a><\/p>\n<\/div>\n

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\u6700\u8fd1\u5c0f\u679c\u5728\u5b66\u4e60\u8fc7\u7a0b\u4e2d\uff0c\u53d1\u73b0\u81ea\u5df1\u7684\u57fa\u56e0ID\u8fdb\u884c\u6ce8\u91ca\u540e\uff0c\u4f7f\u7528\u6ce8\u91ca\u597d\u7684\u57fa\u56e0\u540d\u63d0\u53d6\u8868\u8fbe\u77e9\u9635\u65f6\u603b\u662f\u6709\u4e9b\u57fa\u56e0\u540d\u4e0e\u81ea\u5df1\u6240\u4f7f\u7528\u7684\u8868\u8fbe\u77e9\u9635\u4e0d\u7b26\u5408\uff0c\u8fd9\u65f6\u5019\u5c31\u9700\u8981\u624b\u52a8\u4e00\u4e2a\u4e00\u4e2a\u53bb\u67e5\u627e\u672a\u5339\u914d\u4e0a\u57fa\u56e0\u7684\u522b\u540d\uff0c\u8fd9\u6837\u5bf9\u4e8e\u57fa\u56e0\u5c11\u7684\u65f6\u5019\u633a\u65b9\u4fbf\uff0c\u4f46\u662f\u5982\u679c\u57fa\u56e0\u8fc7\u591a\uff0c\u5728\u9010\u4e2a\u53bb\u67e5\u627e\u5c31\u5f88\u8d39\u65f6\uff0c\u4e3a\u4e86\u89e3\u51b3\u8fd9\u4e2a\u8fd9\u4e2a\u95ee\u9898\uff0c\u4eca\u5929\u5c0f\u679c\u5c31\u7ed9\u5c0f\u4f19\u4f34\u4eec\u6559\u4e00\u79cd\u6279\u91cf\u83b7\u53d6\u57fa\u56e0\u522b\u540d<\/strong><\/span>\u7684\u65b9\u6cd5\uff0c\u8be5\u65b9\u6cd5\u7b80\u5355\u6613\u64cd\u4f5c\uff0c\u6027\u4ef7\u6bd4\u6781\u9ad8\u3002<\/p>\n

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\u4eca\u5929\u5c0f\u679c\u5728\u8fd9\u91cc\u51c6\u5907\u4e86\u4e00\u4e2a\u6587\u4ef6\u7ed9\u6587\u4ef6\u91cc\u9762\u5305\u542b\u591a\u4e2a\u57fa\u56e0ID\uff0c\u4fdd\u5b58\u4e3agene_id.txt\uff0c\u5982\u4e0b\u56fe\u6240\u793a<\/p>\n<\/section>\n

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1.\u6253\u5f00NCBI\uff0c\u5730\u5740\u4e3a\uff1ahttps:\/\/www.ncbi.nlm.nih.gov\/\uff0c<\/strong>\u70b9\u51fb\u8fdb\u5165\u9996\u9875\uff0c\u627e\u5230Resource List<\/p>\n

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2.\u8fdb\u5165Resource List\u76ee\u5f55<\/strong>\uff0c\u627e\u5230Batch Entrez\u5de5\u5177\uff0c\u70b9\u51fb\u8fdb\u5165Batch Entrez\u5de5\u5177\u9875\u9762\u3002<\/p>\n<\/section>\n

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3.\u8fdb\u5165Batch Entrez\u5de5\u5177\u9875\u9762\uff0c\u8be5\u9875\u9762\u9876\u90e8\u53ef\u4ee5\u770b\u5230\u6709Database\uff0cFile\u4e24\u4e2a\u76ee\u5f55\u4e0b\u90fd\u6709\u4e0b\u62c9\u83dc\u5355\uff0c\u5728Database\u4e0b\u62c9\u83dc\u5355\u4e2d\u4e2d\u627e\u5230Gene,\u5728File\u4e2d\u4e0a\u4f20gene_id.txt\u6587\u4ef6,\u70b9\u51fbRetrieve<\/strong>\uff0c\u5f00\u59cb\u67e5\u627e\u3002<\/p>\n<\/section>\n

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4.\u70b9\u51fb\u5b8cRetrieve\uff0c\u5c31\u4f1a\u8fdb\u5165\u67e5\u627e\u9875\u9762\uff0c\u56e0\u4e3a\u5c0f\u679c\u67e5\u8be2\u7684ID\u5c3110\u6761\u5de6\u53f3\uff0c\u6240\u4ee5\u5f88\u5feb\u5c31\u67e5\u8be2\u5b8c\u4e86\uff0c\u70b9\u51fbRetrieve records for 10 UID(s)\u8fdb\u884c\u7ed3\u679c\u67e5\u770b\u3002<\/p>\n<\/section>\n

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5.\u70b9\u51fb\u5b8cRetrieve records for 10 UID(s)\uff0c\u8fdb\u5165\u5230\u4e00\u4e2a\u65b0\u7684\u9875\u9762\uff0c\u4e5f\u5c31\u662f\u6279\u91cf\u67e5\u8be2\u5230\u7684\u57fa\u56e0\u522b\u540d\u7684\u7ed3\u679c\u9875\u9762\uff0c\u7ed3\u679c\u5982\u4e0b<\/strong>\uff0c<\/strong>\u5c0f\u4f19\u4f34\u53ef\u4ee5\u81ea\u884c\u67e5\u770b\u81ea\u5df1\u7684\u7ed3\u679c\u3002<\/p>\n<\/section>\n

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\u5230\u8fd9\u91cc\u5462\uff0c\u5c0f\u679c\u7684\u5206\u4eab\u5c31\u7ed3\u675f\u4e86\uff0c\u662f\u4e0d\u662f\u5f88\u5bb9\u6613\uff0c\u5c0f\u4f19\u4f34\u4eec\u5feb\u53bb\u8bd5\u8bd5\u5427\u3002<\/p>\n<\/section>\n<\/section>\n<\/section>\n

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\u63a8\u8350\u9605\u8bfb<\/strong><\/p>\n<\/section>\n<\/section>\n<\/section>\n<\/section>\n

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\u4e0d\u4f1a\u4f7f\u7528MSigDB\u6570\u636e\u5e93\u4e0b\u8f7d\u6570\u636e\uff1f\u5feb\u6765\u770b\u8fd9\u91cc<\/a><\/p>\n

\u72ec\u6728\u6210\u6797\uff0c\u5c0f\u679c\u6559\u60a8\u7528genemania\u628a\u5c11\u91cf\u57fa\u56e0\u505a\u6210PPI\u7f51\u7edc\u56fe<\/a><\/p>\n

JASPAR\u2014\u2014\u53ef\u9884\u6d4b\u8f6c\u5f55\u56e0\u5b50DNA\u7ed3\u5408\u86cb\u767d\u7ed3\u5408\u8bc6\u522b\u4f4d\u70b9\u7684\u6570\u636e\u5e93<\/a><\/p>\n

\u98ce\u9669\u6bd4\u770b\u4e0d\u61c2\uff1f\u5c0f\u679c\u5e26\u4f60\u5f04\u660e\u767d\u5355\u56e0\u7d20COX\u56de\u5f52\u7ed3\u679c<\/a><\/p>\n

LAASO\u7684\u975e\u764c\u75c7\u5f62\u6001\uff0cLASSO\u7684\u8bca\u65ad\u5206\u6790<\/a><\/p>\n

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\u5173\u6ce8\u5c0f\u679c\uff0c\u5c0f\u679c\u5c06\u4f1a\u6301\u7eed\u4e3a\u4f60\u5e26\u6765\u66f4\u591a\u751f\u4fe1\u5e72\u8d27\u54e6\u3002<\/span><\/p>\n<\/section>\n<\/section>\n

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