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0.766044px 0.642788px 2px;color: rgb(0, 0, 0);\">\u201d<\/span><\/span>\uff1b<\/span><\/span><\/p>\n<p><span style=\"text-shadow: rgb(255, 253, 231) 0.766044px 0.642788px 2px;\">\uff082\uff09<span style=\"text-shadow: rgb(255, 253, 231) 0.766044px 0.642788px 2px;background-color: rgb(255, 255, 255);\"><strong><span style=\"text-shadow: rgb(255, 253, 231) 0.766044px 0.642788px 2px;\">Cibersort\u4ee3\u7801Cibersort.R<\/span><\/strong><\/span>\uff1b<\/span><\/p>\n<p><span style=\"text-shadow: rgb(255, 253, 231) 0.766044px 0.642788px 2px;\">\uff083\uff09<span style=\"text-shadow: rgb(255, 253, 231) 0.766044px 0.642788px 2px;background-color: rgb(255, 255, 255);\"><strong><span style=\"background-color: rgb(254, 255, 255);text-shadow: rgb(255, 253, 231) 0.766044px 0.642788px 2px;\">\u81ea\u5df1\u7684\u8868\u8fbe\u77e9\u9635<\/span><\/strong><\/span>\uff1b<\/span><\/p>\n<\/section>\n<\/section>\n<\/section>\n<\/section>\n<p powered-by=\"xiumi.us\"><br \/><\/p>\n<section style=\"padding-right: 12px;padding-left: 12px;color: rgb(16, 116, 231);\" powered-by=\"xiumi.us\">\n<p style=\"text-indent: 0em;text-wrap: wrap;\"><strong>\uff081\uff09<span style=\"background-color: rgb(255, 255, 255);\">LM22.txt\u83b7\u53d6\u65b9\u6cd5\uff1a<\/span><\/strong><\/p>\n<\/section>\n<section style=\"padding-right: 12px;padding-left: 12px;\" powered-by=\"xiumi.us\">\n<p style=\"text-indent: 0em;text-wrap: wrap;\">\u5728Cibersort\u8bba\u6587\u4e2d\uff08https:\/\/www.nature.com\/articles\/nmeth.3337#MOESM207\uff09\u4e0b\u8f7dSupplementry table 1\uff0c\u7136\u540e\u53ea\u5c06\u5176\u4e2d\u77e9\u9635\u90e8\u5206\u4fdd\u7559\u5e76\u4fdd\u5b58\u4e3a\u5236\u8868\u7b26\u5206\u5272\u7684txt\u3002<\/p>\n<\/section>\n<section style=\"text-align: center;margin-top: 10px;margin-bottom: 10px;line-height: 0;\" powered-by=\"xiumi.us\">\n<section style=\"vertical-align: middle;display: inline-block;line-height: 0;\"><img decoding=\"async\" class=\"rich_pages wxw-img\" data-ratio=\"0.4806451612903226\" data-s=\"300,640\" src=\"https:\/\/i0.wp.com\/www.biocloudservice.com\/wordpress\/wp-content\/uploads\/2024\/06\/1_MEO8KRfdtIkrYeWIYlHYO1ibPK4QjA.png?w=640\" onerror=\"this.src='https:\/\/mmbiz.qpic.cn\/mmbiz_png\/KDvR2NrGicSaNjXFo9CXZlB7kGOTMLRxJ2qlCntZj87KhE8FjWgny5w6XOMEO8KRfdtIkrYeWIYlHYO1ibPK4QjA\/640?wx_fmt=png'\" data-type=\"png\" data-w=\"620\" style=\"vertical-align: middle;width: 100%;\" data-recalc-dims=\"1\" \/><\/section>\n<\/section>\n<p powered-by=\"xiumi.us\"><br \/><\/p>\n<section style=\"padding-right: 12px;padding-left: 12px;\" powered-by=\"xiumi.us\">\n<p style=\"text-indent: 0em;text-wrap: wrap;\"><strong><span style=\"color: rgb(16, 116, 231);\">\uff082\uff09Cibersort.R\u83b7\u53d6\u65b9\u5f0f\uff1a<\/span><\/strong><br \/><\/p>\n<\/section>\n<section style=\"padding-right: 12px;padding-left: 12px;\" powered-by=\"xiumi.us\">\n<p style=\"text-indent: 0em;text-wrap: wrap;\">\u5728R\u4e2d\u65b0\u5efa\u4e00\u4e2aR Script\uff0c\u590d\u5236\u8fd9\u4e2a\u7f51\u7ad9\uff08https:\/\/rdrr.io\/github\/singha53\/amritr\/src\/R\/supportFunc_cibersort.R\uff09\u4e2d\u7684\u5185\u5bb9\uff0c\u4fdd\u5b58\u4e3a\u201cCibersort.R\u201d\u5373\u53ef\u3002<\/p>\n<p><br \/><\/p>\n<p style=\"text-indent: 0em;text-wrap: wrap;\"><strong><span style=\"color: rgb(16, 116, 231);\">\uff083\uff09\u81ea\u5df1\u7684\u8868\u8fbe\u77e9\u9635\uff1a<\/span><\/strong><\/p>\n<\/section>\n<section style=\"padding-right: 12px;padding-left: 12px;\" powered-by=\"xiumi.us\">\n<p style=\"text-indent: 0em;text-wrap: wrap;\">\u76f4\u63a5\u7528\u524d\u9762\u4e0b\u8f7d\u7684\u5206\u6790\u5f97\u5230\u7684\u8868\u8fbe\u77e9\u9635\u5c31\u884c\u4e86\uff0c\u7b2c\u4e00\u5217\u662f\u57fa\u56e0\u540d\uff0c\u7b2c\u4e00\u884c\u662f\u6837\u54c1\u540d\uff0c\u4e0d\u80fd\u6709\u91cd\u590d\u57fa\u56e0\u540d\uff0c\u7b2c\u4e00\u5217\u5217\u540d\u4e0d\u80fd\u7a7a\u767d\uff0c\u77e9\u9635\u4e2d\u4e0d\u80fd\u5b58\u5728\u7a7a\u767d\u6216NA\u503c\u3002\u8fd8\u6709\u5c31\u662f\u7b2c\u4e00\u5217\u7684\u5217\u540d\u9700\u8981\u4e0eLM22.txt\u7b2c\u4e00\u5217\u5217\u540d\u4e00\u81f4\uff08\u5c0f\u82b1\u8fd9\u91cc\u90fd\u4e3aGeneSymbol\uff09\u3002\u7136\u540e\u4e5f\u5c06\u5176\u4fdd\u5b58\u4e3a\u5236\u8868\u7b26\u5206\u5272\u7684txt\u3002<\/p>\n<\/section>\n<section style=\"text-align: center;margin-top: 10px;margin-bottom: 10px;line-height: 0;\" powered-by=\"xiumi.us\">\n<section style=\"vertical-align: middle;display: inline-block;line-height: 0;\"><img decoding=\"async\" class=\"rich_pages wxw-img\" data-ratio=\"0.5159883720930233\" data-s=\"300,640\" src=\"https:\/\/i0.wp.com\/www.biocloudservice.com\/wordpress\/wp-content\/uploads\/2024\/06\/2_9jOicOyAAsndN4e7H4Xno0ec2mfibg.png?w=640\" onerror=\"this.src='https:\/\/mmbiz.qpic.cn\/mmbiz_png\/KDvR2NrGicSaNjXFo9CXZlB7kGOTMLRxJWgw1vY56xjGAGBor6g5vdNaOLS9jOicOyAAsndN4e7H4Xno0ec2mfibg\/640?wx_fmt=png'\" data-type=\"png\" data-w=\"688\" style=\"vertical-align: middle;width: 100%;\" data-recalc-dims=\"1\" \/><\/section>\n<\/section>\n<section style=\"padding-right: 12px;padding-left: 12px;\" powered-by=\"xiumi.us\">\n<p>\u7136\u540e\u5c31\u53ef\u4ee5\u5f00\u59cb\u5206\u6790\u4e86\u3002\u5927\u5bb6\u8ddf\u7740\u5c0f\u82b1\u4e00\u8d77\u6765\u64cd\u4f5c\u4e00\u904d\u5427\uff01<br \/><\/p>\n<p><br \/><\/p>\n<\/section>\n<section style=\"text-align: left;justify-content: flex-start;display: flex;flex-flow: row;margin-top: 10px;margin-bottom: 10px;transform: translate3d(-15px, 0px, 0px);\" powered-by=\"xiumi.us\">\n<section style=\"display: inline-block;vertical-align: middle;width: auto;min-width: 5%;flex: 0 0 auto;height: auto;align-self: center;\"><svg viewbox=\"0 0 1 1\" style=\"float:left;line-height:0;width:0;vertical-align:top;\"><\/svg><\/section>\n<section style=\"display: inline-block;vertical-align: middle;width: auto;align-self: center;flex: 0 0 auto;min-width: 5%;height: auto;background-color: rgb(160, 160, 160);padding: 13px;\">\n<section style=\"text-align: justify;color: rgb(62, 62, 62);font-size: 15px;\" powered-by=\"xiumi.us\">\n<p><strong>\u7b2c\u4e00\u6b65\uff1a\u8fdb\u5165\u5de5\u4f5c\u76ee\u5f55\u5e76\u52a0\u8f7d\u5206\u6790\u6240\u9700\u7684R\u5305<\/strong><\/p>\n<\/section>\n<\/section>\n<\/section>\n<section class=\"code-snippet__fix code-snippet__js\">\n<ul class=\"code-snippet__line-index code-snippet__js\">\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<\/ul>\n<pre class=\"code-snippet__js\" data-lang=\"r\"><code><span class=\"code-snippet_outer\">setwd(<span class=\"code-snippet__string\">\"\u4e09\u4e2a\u6587\u4ef6\u6240\u5728\u7684\u6587\u4ef6\u5939\"<\/span>) <span class=\"code-snippet__comment\">#\u8fdb\u5165\u5de5\u4f5c\u76ee\u5f55<\/span><\/span><\/code><code><span class=\"code-snippet_outer\">install.packages(<span class=\"code-snippet__string\">'e1071'<\/span>)<\/span><\/code><code><span class=\"code-snippet_outer\">install.packages(<span class=\"code-snippet__string\">'preprocessCore'<\/span>)<\/span><\/code><code><span class=\"code-snippet_outer\">library(e1071)<\/span><\/code><code><span class=\"code-snippet_outer\">library(preprocessCore)<\/span><\/code><code><span class=\"code-snippet_outer\">library(parallel) <span class=\"code-snippet__comment\">#\u5b89\u88c5\u5e76\u52a0\u8f7d\u6240\u9700R\u5305<\/span><\/span><\/code><\/pre>\n<\/section>\n<p powered-by=\"xiumi.us\"><br \/><\/p>\n<section style=\"text-align: left;justify-content: flex-start;display: flex;flex-flow: row;margin-top: 10px;margin-bottom: 10px;transform: translate3d(-15px, 0px, 0px);\" powered-by=\"xiumi.us\">\n<section style=\"display: inline-block;vertical-align: middle;width: auto;min-width: 5%;flex: 0 0 auto;height: auto;align-self: center;\"><svg viewbox=\"0 0 1 1\" style=\"float:left;line-height:0;width:0;vertical-align:top;\"><\/svg><\/section>\n<section style=\"display: inline-block;vertical-align: middle;width: auto;align-self: center;flex: 0 0 auto;min-width: 5%;height: auto;background-color: rgb(160, 160, 160);padding: 13px;\">\n<section style=\"text-align: justify;color: rgb(62, 62, 62);font-size: 15px;\" powered-by=\"xiumi.us\">\n<p><strong>\u7b2c\u4e8c\u6b65\uff1a\u8fdb\u884cCIBERSORT\u5206\u6790<\/strong><\/p>\n<\/section>\n<\/section>\n<\/section>\n<section class=\"code-snippet__fix code-snippet__js\">\n<ul class=\"code-snippet__line-index code-snippet__js\">\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<\/ul>\n<pre class=\"code-snippet__js\" data-lang=\"r\"><code><span class=\"code-snippet_outer\">source(<span class=\"code-snippet__string\">\"Cibersort.R\"<\/span>) <span class=\"code-snippet__comment\"># \u52a0\u8f7dR\u811a\u672c<\/span><\/span><\/code><code><span class=\"code-snippet_outer\">result1 <- CIBERSORT(<span class=\"code-snippet__string\">\"LM22.txt\"<\/span>, <span class=\"code-snippet__string\">\"expr.txt\"<\/span>, perm = <span class=\"code-snippet__number\">1000<\/span>, QN = <span class=\"code-snippet__built_in\">T<\/span>) <span class=\"code-snippet__comment\">#\u8fd0\u884cR\u811a\u672c\u8fdb\u884cCIBERSORT\u5206\u6790\uff1b<\/span><\/span><\/code><code><span class=\"code-snippet_outer\"><span class=\"code-snippet__comment\">#perm\uff1a\u8868\u793a\u7f6e\u6362\u6b21\u6570\uff0c\u6570\u5b57\u8d8a\u5927\u8fd0\u884c\u65f6\u95f4\u8d8a\u957f\uff0c\u4e00\u822c\u6587\u7ae0\u90fd\u8bbe\u7f6e\u4e3a1000\uff1b<\/span><\/span><\/code><code><span class=\"code-snippet_outer\"><span class=\"code-snippet__comment\">#QN\uff1a\u5982\u679c\u4e3a\u82af\u7247\u6570\u636e\u8fd9\u91cc\u8bbe\u4e3a\u201cT\u201d\uff1b\u5982\u679c\u4e3a\u6d4b\u5e8f\u6570\u636e\u8bbe\u4e3a\u201cF\u201d<\/span><\/span><\/code><code><span class=\"code-snippet_outer\">\u6700\u540e\u4f1a\u5728\u5de5\u4f5c\u76ee\u5f55\u4e0b\u81ea\u52a8\u751f\u6210\u7ed3\u679c\u6587\u4ef6\u201cCIBERSORT-Results.txt\u201d\u3002<\/span><\/code><\/pre>\n<\/section>\n<section style=\"padding-right: 12px;padding-left: 12px;\" powered-by=\"xiumi.us\">\n<p>\u6700\u540e\u4f1a\u5728\u5de5\u4f5c\u76ee\u5f55\u4e0b\u81ea\u52a8\u751f\u6210\u7ed3\u679c\u6587\u4ef6\u201cCIBERSORT-Results.txt\u201d\u3002<\/p>\n<\/section>\n<section style=\"text-align: center;margin-top: 10px;margin-bottom: 10px;line-height: 0;\" powered-by=\"xiumi.us\">\n<section style=\"vertical-align: middle;display: inline-block;line-height: 0;\"><img decoding=\"async\" class=\"rich_pages wxw-img\" data-ratio=\"0.47692307692307695\" data-s=\"300,640\" src=\"https:\/\/i0.wp.com\/www.biocloudservice.com\/wordpress\/wp-content\/uploads\/2024\/06\/3_nzLU0THocOmicibMSMBayW5GrLyAUg.png?w=640\" onerror=\"this.src='https:\/\/mmbiz.qpic.cn\/mmbiz_png\/KDvR2NrGicSaNjXFo9CXZlB7kGOTMLRxJ5rAhpNgrqJ1qjiaOq3GAzZTwmJ5nzLU0THocOmicibMSMBayW5GrLyAUg\/640?wx_fmt=png'\" data-type=\"png\" data-w=\"650\" style=\"vertical-align: middle;width: 100%;\" data-recalc-dims=\"1\" \/><\/section>\n<\/section>\n<section style=\"padding-right: 12px;padding-left: 12px;\" powered-by=\"xiumi.us\">\n<p style=\"text-indent: 0em;text-wrap: wrap;\">\u62ff\u5230\u7ed3\u679c\u6587\u4ef6\u4ee5\u540e\u6211\u4eec\u5c31\u53ef\u4ee5\u6839\u636e\u81ea\u5df1\u7814\u7a76\u7684\u5206\u7ec4\u60c5\u51b5\u6765\u7ed8\u5236\u7bb1\u7ebf\u56fe\uff0c\u770b\u5728\u4e24\u8005\u4e4b\u95f4\u5404\u514d\u75ab\u7ec6\u80de\u7684\u5dee\u5f02\u60c5\u51b5\u3002\u9996\u5148\u6211\u4eec\u8fd9\u91cc\u9664\u4e86\u4e0a\u9762\u5f97\u5230\u7684\u7ed3\u679c\u6587\u4ef6\uff0c\u8fd8\u9700\u8981\u51c6\u5907\u4e00\u4e2a\u5206\u7ec4\u6587\u4ef6\uff0c\u5982\u56fe\u6240\u793a\u3002<\/p>\n<\/section>\n<section style=\"text-align: center;margin-top: 10px;margin-bottom: 10px;line-height: 0;\" powered-by=\"xiumi.us\">\n<section style=\"vertical-align: middle;display: inline-block;line-height: 0;width: 60%;height: auto;\"><img decoding=\"async\" class=\"rich_pages wxw-img\" data-ratio=\"1.9664429530201342\" data-s=\"300,640\" src=\"https:\/\/i0.wp.com\/www.biocloudservice.com\/wordpress\/wp-content\/uploads\/2024\/06\/4_YKibHK1ofWQB3A32s3NiaTHyTupibg.png?w=640\" onerror=\"this.src='https:\/\/mmbiz.qpic.cn\/mmbiz_png\/KDvR2NrGicSaNjXFo9CXZlB7kGOTMLRxJwmbvia6sYBK3mIt50BMIic9ZHhEfAYKibHK1ofWQB3A32s3NiaTHyTupibg\/640?wx_fmt=png'\" data-type=\"png\" data-w=\"149\" style=\"vertical-align: middle;width: 100%;\" data-recalc-dims=\"1\" \/><\/section>\n<\/section>\n<p powered-by=\"xiumi.us\"><br \/><\/p>\n<section style=\"padding-right: 12px;padding-left: 12px;\" powered-by=\"xiumi.us\">\n<p>\u597d\u4e86\u4e00\u5207\u51c6\u5907\u5c31\u7eea\uff0c\u8ddf\u7740\u5c0f\u82b1\u4e00\u8d77\u6765\u7ed8\u5236\u7bb1\u7ebf\u56fe\u5427\uff01<\/p>\n<\/section>\n<section style=\"text-align: left;justify-content: flex-start;display: flex;flex-flow: row;margin-top: 10px;margin-bottom: 10px;transform: translate3d(-15px, 0px, 0px);\" powered-by=\"xiumi.us\">\n<section style=\"display: inline-block;vertical-align: middle;width: auto;min-width: 5%;flex: 0 0 auto;height: auto;align-self: center;\"><svg viewbox=\"0 0 1 1\" style=\"float:left;line-height:0;width:0;vertical-align:top;\"><\/svg><\/section>\n<section style=\"display: inline-block;vertical-align: middle;width: auto;align-self: center;flex: 0 0 auto;min-width: 5%;height: auto;background-color: rgba(224, 225, 178, 0.47);padding: 13px;\">\n<section style=\"text-align: justify;color: rgb(125, 127, 90);\" powered-by=\"xiumi.us\">\n<p><strong>\u7b2c\u4e00\u6b65\uff1a\u52a0\u8f7d\u5206\u6790\u6240\u9700R\u5305\u4ee5\u53ca\u5bfc\u5165\u6570\u636e<\/strong><\/p>\n<\/section>\n<\/section>\n<\/section>\n<section class=\"code-snippet__fix code-snippet__js\">\n<ul class=\"code-snippet__line-index code-snippet__js\">\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<\/ul>\n<pre class=\"code-snippet__js\" data-lang=\"r\"><code><span class=\"code-snippet_outer\">library(tidyverse)<\/span><\/code><code><span class=\"code-snippet_outer\">b <- read.table(<span class=\"code-snippet__string\">\"group.txt\"<\/span>,sep = <span class=\"code-snippet__string\">\"t\"<\/span>,row.names = <span class=\"code-snippet__number\">1<\/span>,check.names = <span class=\"code-snippet__built_in\">F<\/span>,header = <span class=\"code-snippet__built_in\">T<\/span>)<\/span><\/code><code><span class=\"code-snippet_outer\">a <- read.table(<span class=\"code-snippet__string\">\"CIBERSORT-Results.txt\"<\/span>,sep = <span class=\"code-snippet__string\">\"t\"<\/span>,row.names = <span class=\"code-snippet__number\">1<\/span>,check.names = <span class=\"code-snippet__built_in\">F<\/span>,header = <span class=\"code-snippet__built_in\">T<\/span>)<\/span><\/code><\/pre>\n<\/section>\n<p powered-by=\"xiumi.us\"><br \/><\/p>\n<section style=\"text-align: left;justify-content: flex-start;display: flex;flex-flow: row;margin-top: 10px;margin-bottom: 10px;transform: translate3d(-15px, 0px, 0px);\" powered-by=\"xiumi.us\">\n<section style=\"display: inline-block;vertical-align: middle;width: auto;min-width: 5%;flex: 0 0 auto;height: auto;align-self: center;\"><svg viewbox=\"0 0 1 1\" style=\"float:left;line-height:0;width:0;vertical-align:top;\"><\/svg><\/section>\n<section style=\"display: inline-block;vertical-align: middle;width: auto;align-self: center;flex: 0 0 auto;min-width: 5%;height: auto;background-color: rgba(224, 225, 178, 0.47);padding: 13px;\">\n<section style=\"font-size: 12px;text-align: justify;color: rgb(125, 127, 90);\" powered-by=\"xiumi.us\">\n<p><strong>\u7b2c\u4e8c\u6b65\uff1a\u5bf9\u6570\u636e\u8fdb\u884c\u4e00\u4e2a\u7b80\u5355\u5904\u7406\uff0c\u4f7f\u5176\u80fd\u7528\u4e8e\u540e\u7eed\u5206\u6790<\/strong><\/p>\n<\/section>\n<\/section>\n<\/section>\n<section style=\"padding-right: 12px;padding-left: 12px;\" powered-by=\"xiumi.us\">\n<p>\u5728\u6211\u4eec\u514d\u75ab\u6d78\u6da6\u5206\u6790\u5f97\u5230\u7684\u7ed3\u679c\u6587\u4ef6\u6700\u540e\u6709\u4e09\u5217\u5185\u5bb9\u201cP-value\uff0cCorrelation\u548cRMSE\u201d\u540e\u7eed\u5206\u6790\u662f\u7528\u4e0d\u5230\u7684\uff0c\u6240\u4ee5\u6211\u4eec\u9700\u8981\u5c06\u5176\u5220\u6389\u3002<\/p>\n<p>a <- a[,1:22] #\u53bb\u9664\u6d78\u6da6\u5206\u6790\u7ed3\u679c\u6587\u4ef6\u540e\u4e09\u5217<\/p>\n<\/section>\n<section style=\"text-align: center;margin-top: 10px;margin-bottom: 10px;line-height: 0;\" powered-by=\"xiumi.us\">\n<section style=\"vertical-align: middle;display: inline-block;line-height: 0;width: 100%;height: auto;\"><img decoding=\"async\" class=\"rich_pages wxw-img\" data-ratio=\"0.9731903485254692\" data-s=\"300,640\" src=\"https:\/\/i0.wp.com\/www.biocloudservice.com\/wordpress\/wp-content\/uploads\/2024\/06\/5_gWW2judBr7AJEicU7gYVS11ZR3k2QA.png?w=640\" onerror=\"this.src='https:\/\/mmbiz.qpic.cn\/mmbiz_png\/KDvR2NrGicSaNjXFo9CXZlB7kGOTMLRxJREpDZHlVLapic2wc8uqxX1OusvgWW2judBr7AJEicU7gYVS11ZR3k2QA\/640?wx_fmt=png'\" data-type=\"png\" data-w=\"373\" style=\"vertical-align: middle;width: 100%;\" data-recalc-dims=\"1\" \/><\/section>\n<\/section>\n<p powered-by=\"xiumi.us\"><br \/><\/p>\n<section style=\"padding-right: 12px;padding-left: 12px;\" powered-by=\"xiumi.us\">\n<p>\u7136\u540e\u6211\u4eec\u8fd8\u9700\u8981\u5224\u65ad\u4e00\u4e0b\uff0c\u4e24\u4e2a\u6587\u4ef6\u4e2d\u6837\u672c\u7684\u987a\u5e8f\u662f\u5426\u4e00\u81f4\uff0c\u56e0\u4e3a\u540e\u9762\u9700\u8981\u5c06\u4e24\u4e2a\u6587\u4ef6\u7684\u4fe1\u606f\u8fdb\u884c\u5408\u5e76\uff0c\u5982\u679c\u4e0d\u662f\u4e00\u81f4\u7684\u4f1a\u5bfc\u81f4\u5206\u6790\u9519\u8bef\u3002<\/p>\n<p>identical(rownames(a),rownames(b)) #\u5224\u65ad\u4e24\u4e2a\u6587\u4ef6\u4e2d\u6837\u672c\u987a\u5e8f\u662f\u5426\u4e00\u81f4\uff0c\u8fd4\u56de\u503c\u4e3a\u201cTRUE\u201d\uff0c\u5219\u662f\u4e00\u81f4\u7684\u3002<\/p>\n<\/section>\n<section style=\"text-align: center;margin-top: 10px;margin-bottom: 10px;line-height: 0;\" powered-by=\"xiumi.us\">\n<section style=\"vertical-align: middle;display: inline-block;line-height: 0;\"><img decoding=\"async\" class=\"rich_pages wxw-img\" data-ratio=\"0.06551724137931035\" data-s=\"300,640\" src=\"https:\/\/i0.wp.com\/www.biocloudservice.com\/wordpress\/wp-content\/uploads\/2024\/06\/6_cibLHuxiaq0FhkL7ala7BVtBVQb13w.png?w=640\" onerror=\"this.src='https:\/\/mmbiz.qpic.cn\/mmbiz_png\/KDvR2NrGicSaNjXFo9CXZlB7kGOTMLRxJOsNcw7f8EV9wGTgwjxZJxF1ITKicibLHuxiaq0FhkL7ala7BVtBVQb13w\/640?wx_fmt=png'\" data-type=\"png\" data-w=\"580\" style=\"vertical-align: middle;width: 100%;\" data-recalc-dims=\"1\" \/><\/section>\n<\/section>\n<section class=\"code-snippet__fix code-snippet__js\">\n<ul class=\"code-snippet__line-index code-snippet__js\">\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<\/ul>\n<pre class=\"code-snippet__js\" data-lang=\"r\"><code><span class=\"code-snippet_outer\"><span class=\"code-snippet__built_in\">class<\/span>(b$group)<\/span><\/code><code><span class=\"code-snippet_outer\">a$group <- b$group <span class=\"code-snippet__comment\">#\u5c06\u5206\u7ec4\u4fe1\u606f\u6dfb\u52a0\u5230a\u540e\u9762<\/span><\/span><\/code><code><span class=\"code-snippet_outer\">a <- a %>% rownames_to_column(<span class=\"code-snippet__string\">\"sample\"<\/span>) <span class=\"code-snippet__comment\">#\u628a\u884c\u540d\u53d8\u6210\u4e00\u5217\uff0c\u5e76\u52a0\u4e0a\u201csample\u201d<\/span><\/span><\/code><code><span class=\"code-snippet_outer\">library(ggsci)<\/span><\/code><code><span class=\"code-snippet_outer\">library(tidyr)<\/span><\/code><code><span class=\"code-snippet_outer\">library(ggpubr)<\/span><\/code><code><span class=\"code-snippet_outer\">b <- gather(a,key=CIBERSORT,value = Proportion,-<span class=\"code-snippet__built_in\">c<\/span>(group,sample))<\/span><\/code><code><span class=\"code-snippet_outer\"><span class=\"code-snippet__comment\">#\u7ed8\u5236\u7bb1\u7ebf\u56fe<\/span><\/span><\/code><code><span class=\"code-snippet_outer\">ggboxplot(b, x = <span class=\"code-snippet__string\">\"CIBERSORT\"<\/span>, y = <span class=\"code-snippet__string\">\"Proportion\"<\/span>,<\/span><\/code><code><span class=\"code-snippet_outer\">fill = <span class=\"code-snippet__string\">\"group\"<\/span>, palette = <span class=\"code-snippet__string\">\"lancet\"<\/span>)+<\/span><\/code><code><span class=\"code-snippet_outer\">stat_compare_means(aes(group = group),<\/span><\/code><code><span class=\"code-snippet_outer\">method = <span class=\"code-snippet__string\">\"wilcox.test\"<\/span>,<\/span><\/code><code><span class=\"code-snippet_outer\">label = <span class=\"code-snippet__string\">\"p.signif\"<\/span>,<\/span><\/code><code><span class=\"code-snippet_outer\">symnum.args=<span class=\"code-snippet__built_in\">list<\/span>(cutpoints = <span class=\"code-snippet__built_in\">c<\/span>(<span class=\"code-snippet__number\">0<\/span>, <span class=\"code-snippet__number\">0.001<\/span>, <span class=\"code-snippet__number\">0.01<\/span>, <span class=\"code-snippet__number\">0.05<\/span>, <span class=\"code-snippet__number\">1<\/span>),<\/span><\/code><code><span class=\"code-snippet_outer\">symbols = <span class=\"code-snippet__built_in\">c<\/span>(<span class=\"code-snippet__string\">\"***\"<\/span>,<span class=\"code-snippet__string\">\"*\"<\/span>,<span class=\"code-snippet__string\">\"ns\"<\/span>)))+<\/span><\/code><code><span class=\"code-snippet_outer\">theme(text = element_text(size=<span class=\"code-snippet__number\">10<\/span>),<\/span><\/code><code><span class=\"code-snippet_outer\">axis.text.x = element_text(angle=<span class=\"code-snippet__number\">45<\/span>, hjust=<span class=\"code-snippet__number\">1<\/span>))<\/span><\/code><code><span class=\"code-snippet_outer\">dev.off()<\/span><\/code><\/pre>\n<\/section>\n<p powered-by=\"xiumi.us\"><br \/><\/p>\n<section style=\"padding-right: 12px;padding-left: 12px;\" powered-by=\"xiumi.us\">\n<p>\u6700\u540e\u6211\u4eec\u5c31\u80fd\u5f97\u5230\u60f3\u8981\u7684\u7ed3\u679c\u4e86\u3002<br \/><\/p>\n<\/section>\n<section style=\"text-align: center;margin-top: 10px;margin-bottom: 10px;line-height: 0;\" powered-by=\"xiumi.us\">\n<section style=\"vertical-align: middle;display: inline-block;line-height: 0;\"><img decoding=\"async\" class=\"rich_pages wxw-img\" data-ratio=\"0.8729050279329609\" data-s=\"300,640\" src=\"https:\/\/i0.wp.com\/www.biocloudservice.com\/wordpress\/wp-content\/uploads\/2024\/06\/7_ZKqiazic8HMkGdliaicFqhmks90icw.png?w=640\" onerror=\"this.src='https:\/\/mmbiz.qpic.cn\/mmbiz_png\/KDvR2NrGicSaNjXFo9CXZlB7kGOTMLRxJ376MpPjW0tKOibBHEX2GWicOfeMYu48ZKqiazic8HMkGdliaicFqhmks90icw\/640?wx_fmt=png'\" data-type=\"png\" data-w=\"716\" style=\"vertical-align: middle;width: 100%;\" data-recalc-dims=\"1\" \/><\/section>\n<\/section>\n<p powered-by=\"xiumi.us\"><br \/><\/p>\n<section style=\"text-align: left;justify-content: flex-start;display: flex;flex-flow: row;margin-top: 10px;margin-bottom: 10px;\" powered-by=\"xiumi.us\">\n<section style=\"display: inline-block;width: 98%;vertical-align: top;align-self: flex-start;flex: 0 0 auto;height: auto;border-style: solid;border-width: 2px;border-color: rgb(160, 160, 160);padding: 27px;\">\n<section style=\"text-align: justify;line-height: 1.6;letter-spacing: 0px;padding-right: 6px;padding-left: 6px;\" powered-by=\"xiumi.us\">\n<p>\u597d\u4e86!\u4eca\u5929\u7684\u5185\u5bb9\u5206\u4eab\u5c31\u5230\u8fd9\u91cc\u4e86\u3002\u5927\u5bb6\u6709\u4efb\u4f55\u95ee\u9898\u90fd\u53ef\u4ee5\u7559\u8a00\u548c\u5c0f\u82b1\u8ba8\u8bba\u54e6\uff01\u6211\u4eec\u4e0b\u671f\u518d\u89c1\uff01<\/p>\n<p><br \/><\/p>\n<p>\u6b22\u8fce\u4f7f\u7528\uff1a\u4e91\u751f\u4fe1 – \u5b66\u751f\u7269\u4fe1\u606f\u5b66 (biocloudservice.com)<\/p>\n<p><br \/><\/p>\n<p>\u5982\u679c\u60f3\u7528\u670d\u52a1\u5668\u53ef\u4ee5\u8054\u7cfb\u5fae\u4fe1\uff1a18502195490\uff08\u5feb\u6765\u8054\u7cfb\u6211\u4eec\u4f7f\u7528\u5427\uff01\uff09<\/p>\n<\/section>\n<section style=\"text-align: right;justify-content: flex-end;display: flex;flex-flow: row;transform: translate3d(40px, 0px, 0px);margin-bottom: -40px;\" powered-by=\"xiumi.us\">\n<section style=\"display: inline-block;width: auto;vertical-align: top;align-self: flex-start;flex: 0 0 auto;min-width: 5%;height: auto;\">\n<section style=\"transform: rotateZ(45deg);\" powered-by=\"xiumi.us\">\n<section style=\"text-align: center;\">\n<section style=\"display: inline-block;width: 26px;height: 26px;vertical-align: top;overflow: hidden;background-color: rgb(255, 255, 255);border-left: 1px solid rgb(160, 160, 160);border-bottom-left-radius: 0px;\">\n<section style=\"text-align: justify;\" powered-by=\"xiumi.us\">\n<p><br \/><\/p>\n<\/section>\n<\/section>\n<\/section>\n<\/section>\n<\/section>\n<\/section>\n<\/section>\n<\/section>\n<section style=\"padding-right: 12px;padding-left: 12px;\" powered-by=\"xiumi.us\">\n<p><a target=\"_blank\" href=\"https:\/\/mp.weixin.qq.com\/s?__biz=MzAwNjE0MDY3MQ==&mid=2650761303&idx=2&sn=6f73471d1e82c56c0b2160d0fcd32d53&scene=21#wechat_redirect\" textvalue=\"\" linktype=\"image\" imgurl=\"https:\/\/mmbiz.qpic.cn\/mmbiz_jpg\/KDvR2NrGicSYCoxhZfqr5L0fxy3C9eSFdt72DV7zqsmrNaiaaoOhic3sHzUpBN4r4MaBCk9p9v16yZwvMvS5nM7sQ\/0?wx_fmt=jpeg\" imgdata=\"[object Object]\" tab=\"innerlink\" data-linktype=\"1\" rel=\"noopener\"><span class=\"js_jump_icon h5_image_link\"><img decoding=\"async\" class=\"rich_pages wxw-img\" data-galleryid=\"\" data-ratio=\"0.35083798882681566\" data-s=\"300,640\" src=\"https:\/\/i0.wp.com\/www.biocloudservice.com\/wordpress\/wp-content\/uploads\/2024\/06\/8_pBN4r4MaBCk9p9v16yZwvMvS5nM7sQ-6.jpg?w=640\" onerror=\"this.src='https:\/\/mmbiz.qpic.cn\/mmbiz_jpg\/KDvR2NrGicSYCoxhZfqr5L0fxy3C9eSFdt72DV7zqsmrNaiaaoOhic3sHzUpBN4r4MaBCk9p9v16yZwvMvS5nM7sQ\/640?wx_fmt=jpeg'\" data-type=\"jpeg\" data-w=\"895\" style=\"\" data-recalc-dims=\"1\" \/><\/span><\/a><br \/><\/p>\n<p style=\"text-align: center;\"><img decoding=\"async\" class=\"rich_pages wxw-img\" data-galleryid=\"\" data-ratio=\"0.3488888888888889\" data-s=\"300,640\" src=\"https:\/\/i0.wp.com\/www.biocloudservice.com\/wordpress\/wp-content\/uploads\/2024\/06\/9_wGGHoIUWPWSIgBgzuWA7zggZhslM2g.jpg?w=640\" onerror=\"this.src='https:\/\/mmbiz.qpic.cn\/mmbiz_jpg\/KDvR2NrGicSbGdkTKlXI3tbocicP8GUCzibJV5ibjQs6D7lQhs1pnDYZQiauBwGGHoIUWPWSIgBgzuWA7zggZhslM2g\/640?wx_fmt=jpeg'\" data-type=\"jpeg\" data-w=\"900\" style=\"\" data-recalc-dims=\"1\" \/><\/p>\n<p>(\u70b9\u51fb\u9605\u8bfb\u539f\u6587\u8df3\u8f6c\uff09<\/p>\n<\/section>\n<section style=\"text-align: left;margin: 10px 0%;\" powered-by=\"xiumi.us\">\n<section style=\"display: inline-block;min-width: 10%;vertical-align: top;padding-right: 20px;\">\n<section style=\"transform: translate3d(20px, 0px, 0px);margin: 10px 0% -30px;\" powered-by=\"xiumi.us\">\n<section style=\"color: rgb(62, 62, 62);text-align: justify;font-size: 12px;\">\n<p><strong><img decoding=\"async\" loading=\"lazy\" data-ratio=\"0.866\" data-s=\"300,640\" src=\"https:\/\/i0.wp.com\/www.biocloudservice.com\/wordpress\/wp-content\/uploads\/2024\/06\/10_uwmmcKK7WicIjk7K6wUXbvLicfkDlg.gif?resize=18%2C15\" onerror=\"this.src='https:\/\/mmbiz.qpic.cn\/mmbiz_gif\/KDvR2NrGicSaNjXFo9CXZlB7kGOTMLRxJv8liaRicibuX8INkg3t78ldyTAspmuwmmcKK7WicIjk7K6wUXbvLicfkDlg\/640?wx_fmt=gif'\" data-type=\"gif\" data-w=\"500\" height=\"15\" style=\"width: 18px;height: 15px;\" width=\"18\" data-recalc-dims=\"1\" \/> \u70b9\u4e00\u4e0b\u9605\u8bfb\u539f\u6587\u4e86\u89e3\u66f4\u591a\u8d44\u8baf<\/strong><\/p>\n<\/section>\n<\/section>\n<section style=\"\" powered-by=\"xiumi.us\">\n<section style=\"display: inline-block;width: 50px;height: 40px;vertical-align: top;overflow: hidden;\">\n<section style=\"text-align: center;margin-right: 0%;margin-left: 0%;line-height: 0;\" powered-by=\"xiumi.us\">\n<section style=\"vertical-align: middle;display: inline-block;line-height: 0;\"><img decoding=\"async\" data-ratio=\"0.7709090909090909\" data-s=\"300,640\" src=\"https:\/\/i0.wp.com\/www.biocloudservice.com\/wordpress\/wp-content\/uploads\/2024\/06\/11_nfaEzY4KtiakkTcRbqHr0ociaU7cQw.png?w=640\" onerror=\"this.src='https:\/\/mmbiz.qpic.cn\/mmbiz_png\/KDvR2NrGicSaNjXFo9CXZlB7kGOTMLRxJ1lx5kBXggZPBQaxJvkxhGNYmZjnfaEzY4KtiakkTcRbqHr0ociaU7cQw\/640?wx_fmt=png'\" data-type=\"png\" data-w=\"275\" style=\"vertical-align: middle;width: 100%;\" data-recalc-dims=\"1\" \/><\/section>\n<\/section>\n<\/section>\n<\/section>\n<\/section>\n<\/section>\n<\/section>\n<p style=\"display: none;margin-bottom: 24px;\"><mp-style-type data-value=\"3\"><\/mp-style-type><\/p>\n<div class=\"msg_source_url\"><a href=\"http:\/\/www.biocloudservice.com\/home.html\" target=\"_blank\" rel=\"noopener\">\u9605\u8bfb\u539f\u6587<\/a><\/div>\n<p><\/content><\/p>\n<div class=\"msg_source_url\"><a href=\"http:\/\/www.biocloudservice.com\/home.html\" target=\"_blank\" rel=\"noopener\">\u9605\u8bfb\u539f\u6587<\/a><\/div>\n<\/div>\n<p><\/body><br \/>\n<\/html><\/p>\n","protected":false},"excerpt":{"rendered":"<p>\u4e00\u5206\u949f\u6559\u4f1a\u4f60\u5728R\u8bed\u8a00\u4e2d\u4f7f\u7528CIBERSORT\u8fdb\u884c\u514d\u75ab\u6d78\u6da6\u5206\u6790 \u5c0f\u82b1 \u751f\u4fe1\u679c & […]<\/p>\n","protected":false},"author":1,"featured_media":0,"comment_status":"closed","ping_status":"","sticky":false,"template":"","format":"standard","meta":{"jetpack_post_was_ever_published":false,"_jetpack_newsletter_access":""},"categories":[1],"tags":[],"jetpack_featured_media_url":"","_links":{"self":[{"href":"http:\/\/www.biocloudservice.com\/wordpress\/index.php?rest_route=\/wp\/v2\/posts\/54078"}],"collection":[{"href":"http:\/\/www.biocloudservice.com\/wordpress\/index.php?rest_route=\/wp\/v2\/posts"}],"about":[{"href":"http:\/\/www.biocloudservice.com\/wordpress\/index.php?rest_route=\/wp\/v2\/types\/post"}],"author":[{"embeddable":true,"href":"http:\/\/www.biocloudservice.com\/wordpress\/index.php?rest_route=\/wp\/v2\/users\/1"}],"replies":[{"embeddable":true,"href":"http:\/\/www.biocloudservice.com\/wordpress\/index.php?rest_route=%2Fwp%2Fv2%2Fcomments&post=54078"}],"version-history":[{"count":1,"href":"http:\/\/www.biocloudservice.com\/wordpress\/index.php?rest_route=\/wp\/v2\/posts\/54078\/revisions"}],"predecessor-version":[{"id":54090,"href":"http:\/\/www.biocloudservice.com\/wordpress\/index.php?rest_route=\/wp\/v2\/posts\/54078\/revisions\/54090"}],"wp:attachment":[{"href":"http:\/\/www.biocloudservice.com\/wordpress\/index.php?rest_route=%2Fwp%2Fv2%2Fmedia&parent=54078"}],"wp:term":[{"taxonomy":"category","embeddable":true,"href":"http:\/\/www.biocloudservice.com\/wordpress\/index.php?rest_route=%2Fwp%2Fv2%2Fcategories&post=54078"},{"taxonomy":"post_tag","embeddable":true,"href":"http:\/\/www.biocloudservice.com\/wordpress\/index.php?rest_route=%2Fwp%2Fv2%2Ftags&post=54078"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}

{"id":54078,"date":"2024-06-16T13:39:00","date_gmt":"2024-06-16T05:39:00","guid":{"rendered":"http:\/\/www.biocloudservice.com\/wordpress\/?p=54078"},"modified":"2024-06-16T13:39:00","modified_gmt":"2024-06-16T05:39:00","slug":"%e4%b8%80%e5%88%86%e9%92%9f%e6%95%99%e4%bc%9a%e4%bd%a0%e5%9c%a8r%e8%af%ad%e8%a8%80%e4%b8%ad%e4%bd%bf%e7%94%a8cibersort%e8%bf%9b%e8%a1%8c%e5%85%8d%e7%96%ab%e6%b5%b8%e6%b6%a6%e5%88%86%e6%9e%90","status":"publish","type":"post","link":"http:\/\/www.biocloudservice.com\/wordpress\/?p=54078","title":{"rendered":"\u4e00\u5206\u949f\u6559\u4f1a\u4f60\u5728R\u8bed\u8a00\u4e2d\u4f7f\u7528CIBERSORT\u8fdb\u884c\u514d\u75ab\u6d78\u6da6\u5206\u6790"},"content":{"rendered":"

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\n<\/title><br \/>\n<meta charset=\"utf-8\"><br \/>\n<meta name=\"viewport\" content=\"width=device-width,initial-scale=1.0,maximum-scale=1.0,user-scalable=0,viewport-fit=cover\"><\/p>\n<style>\n*{margin:0;padding:0}html{-ms-text-size-adjust:100%;-webkit-text-size-adjust:100%;line-height:1.6}img{z-index:999;position:relative;max-width:100%;margin:10px 0;}body{letter-spacing:.034em}h1,h2,h3,h4,h5,h6{font-weight:400;font-size:16px}a{color:#576b95;text-decoration:none;-webkit-tap-highlight-color:rgba(0,0,0,0)}td,th{word-wrap:break-word;padding:5px 10px;border:1px solid #DDD;}table{margin-bottom:10px;border-collapse:collapse;display:table;width:100%!important;}.appmsg_skin_default .rich_media_area_primary{background-color:#fff}.appmsg_skin_default .rich_media_area_primary .weui-loadmore_line .weui-loadmore__tips{background-color:#fff}.rich_media_area_primary{padding:20px 16px 12px;background-color:#fafafa}@media (max-width:375px){.rich_media_area_primary{padding:20px 60px 15px 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style=\"float:left;line-height:0;width:0;vertical-align:top;\"><\/svg><\/section>\n<\/section>\n<\/section>\n<\/section>\n<section style=\"padding-right: 12px;padding-left: 12px;\" powered-by=\"xiumi.us\">\n<p style=\"text-indent: 0em;text-wrap: wrap;\">\u5728\u6211\u4eec\u5e73\u65f6\u8fdb\u884c\u75be\u75c5\u7814\u7a76\u5206\u6790\u8fc7\u7a0b\u4e2d\u5fc5\u4e0d\u53ef\u514d\u7684\u9700\u8981\u660e\u786e\u514d\u75ab\u7ec6\u80de\u5728\u4eba\u4f53\u5fae\u73af\u5883\u5185\u7684\u7ec4\u6210\u60c5\u51b5\uff0c\u4ece\u800c\u80fd\u66f4\u597d\u7684\u77e5\u9053\u5728\u75be\u75c5\u7684\u53d1\u751f\u53d1\u5c55\u8fc7\u7a0b\u4e2d\u7a76\u7adf\u662f\u54ea\u79cd\u514d\u75ab\u7ec6\u80de\u4ea7\u751f\u4e86\u91cd\u8981\u4f5c\u7528\uff0c\u8fd9\u6709\u52a9\u4e8e\u9610\u660e\u75be\u75c5\u514d\u75ab\u5e94\u7b54\u7684\u673a\u5236\uff0c\u8fdb\u800c\u6307\u5bfc\u8bbe\u8ba1\u5408\u7406\u7684\u6cbb\u7597\u65b9\u6848\u3002\u76ee\u524d\uff0c\u80fd\u7528\u4e8e\u514d\u75ab\u6d78\u6da6\u5206\u6790\u7684\u65b9\u6cd5\u6709\u5f88\u591a\uff0c\u6bd4\u5982 ssGSEA, CIBERSORT, TIMER, EPIC \u7b49\u3002<\/p>\n<p style=\"text-indent: 0em;text-wrap: wrap;\"><br \/><\/p>\n<p style=\"text-indent: 0em;text-wrap: 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0.766044px 0.642788px 2px;color: rgb(0, 0, 0);\">\u201d<\/span><\/span>\uff1b<\/span><\/span><\/p>\n<p><span style=\"text-shadow: rgb(255, 253, 231) 0.766044px 0.642788px 2px;\">\uff082\uff09<span style=\"text-shadow: rgb(255, 253, 231) 0.766044px 0.642788px 2px;background-color: rgb(255, 255, 255);\"><strong><span style=\"text-shadow: rgb(255, 253, 231) 0.766044px 0.642788px 2px;\">Cibersort\u4ee3\u7801Cibersort.R<\/span><\/strong><\/span>\uff1b<\/span><\/p>\n<p><span style=\"text-shadow: rgb(255, 253, 231) 0.766044px 0.642788px 2px;\">\uff083\uff09<span style=\"text-shadow: rgb(255, 253, 231) 0.766044px 0.642788px 2px;background-color: rgb(255, 255, 255);\"><strong><span style=\"background-color: rgb(254, 255, 255);text-shadow: rgb(255, 253, 231) 0.766044px 0.642788px 2px;\">\u81ea\u5df1\u7684\u8868\u8fbe\u77e9\u9635<\/span><\/strong><\/span>\uff1b<\/span><\/p>\n<\/section>\n<\/section>\n<\/section>\n<\/section>\n<p powered-by=\"xiumi.us\"><br \/><\/p>\n<section style=\"padding-right: 12px;padding-left: 12px;color: rgb(16, 116, 231);\" powered-by=\"xiumi.us\">\n<p style=\"text-indent: 0em;text-wrap: wrap;\"><strong>\uff081\uff09<span style=\"background-color: rgb(255, 255, 255);\">LM22.txt\u83b7\u53d6\u65b9\u6cd5\uff1a<\/span><\/strong><\/p>\n<\/section>\n<section style=\"padding-right: 12px;padding-left: 12px;\" powered-by=\"xiumi.us\">\n<p style=\"text-indent: 0em;text-wrap: wrap;\">\u5728Cibersort\u8bba\u6587\u4e2d\uff08https:\/\/www.nature.com\/articles\/nmeth.3337#MOESM207\uff09\u4e0b\u8f7dSupplementry table 1\uff0c\u7136\u540e\u53ea\u5c06\u5176\u4e2d\u77e9\u9635\u90e8\u5206\u4fdd\u7559\u5e76\u4fdd\u5b58\u4e3a\u5236\u8868\u7b26\u5206\u5272\u7684txt\u3002<\/p>\n<\/section>\n<section style=\"text-align: center;margin-top: 10px;margin-bottom: 10px;line-height: 0;\" powered-by=\"xiumi.us\">\n<section style=\"vertical-align: middle;display: inline-block;line-height: 0;\"><img decoding=\"async\" class=\"rich_pages wxw-img\" data-ratio=\"0.4806451612903226\" data-s=\"300,640\" src=\"https:\/\/i0.wp.com\/www.biocloudservice.com\/wordpress\/wp-content\/uploads\/2024\/06\/1_MEO8KRfdtIkrYeWIYlHYO1ibPK4QjA.png?w=640\" onerror=\"this.src='https:\/\/mmbiz.qpic.cn\/mmbiz_png\/KDvR2NrGicSaNjXFo9CXZlB7kGOTMLRxJ2qlCntZj87KhE8FjWgny5w6XOMEO8KRfdtIkrYeWIYlHYO1ibPK4QjA\/640?wx_fmt=png'\" data-type=\"png\" data-w=\"620\" style=\"vertical-align: middle;width: 100%;\" data-recalc-dims=\"1\" \/><\/section>\n<\/section>\n<p powered-by=\"xiumi.us\"><br \/><\/p>\n<section style=\"padding-right: 12px;padding-left: 12px;\" powered-by=\"xiumi.us\">\n<p style=\"text-indent: 0em;text-wrap: wrap;\"><strong><span style=\"color: rgb(16, 116, 231);\">\uff082\uff09Cibersort.R\u83b7\u53d6\u65b9\u5f0f\uff1a<\/span><\/strong><br \/><\/p>\n<\/section>\n<section style=\"padding-right: 12px;padding-left: 12px;\" powered-by=\"xiumi.us\">\n<p style=\"text-indent: 0em;text-wrap: wrap;\">\u5728R\u4e2d\u65b0\u5efa\u4e00\u4e2aR Script\uff0c\u590d\u5236\u8fd9\u4e2a\u7f51\u7ad9\uff08https:\/\/rdrr.io\/github\/singha53\/amritr\/src\/R\/supportFunc_cibersort.R\uff09\u4e2d\u7684\u5185\u5bb9\uff0c\u4fdd\u5b58\u4e3a\u201cCibersort.R\u201d\u5373\u53ef\u3002<\/p>\n<p><br \/><\/p>\n<p style=\"text-indent: 0em;text-wrap: wrap;\"><strong><span style=\"color: rgb(16, 116, 231);\">\uff083\uff09\u81ea\u5df1\u7684\u8868\u8fbe\u77e9\u9635\uff1a<\/span><\/strong><\/p>\n<\/section>\n<section style=\"padding-right: 12px;padding-left: 12px;\" powered-by=\"xiumi.us\">\n<p style=\"text-indent: 0em;text-wrap: wrap;\">\u76f4\u63a5\u7528\u524d\u9762\u4e0b\u8f7d\u7684\u5206\u6790\u5f97\u5230\u7684\u8868\u8fbe\u77e9\u9635\u5c31\u884c\u4e86\uff0c\u7b2c\u4e00\u5217\u662f\u57fa\u56e0\u540d\uff0c\u7b2c\u4e00\u884c\u662f\u6837\u54c1\u540d\uff0c\u4e0d\u80fd\u6709\u91cd\u590d\u57fa\u56e0\u540d\uff0c\u7b2c\u4e00\u5217\u5217\u540d\u4e0d\u80fd\u7a7a\u767d\uff0c\u77e9\u9635\u4e2d\u4e0d\u80fd\u5b58\u5728\u7a7a\u767d\u6216NA\u503c\u3002\u8fd8\u6709\u5c31\u662f\u7b2c\u4e00\u5217\u7684\u5217\u540d\u9700\u8981\u4e0eLM22.txt\u7b2c\u4e00\u5217\u5217\u540d\u4e00\u81f4\uff08\u5c0f\u82b1\u8fd9\u91cc\u90fd\u4e3aGeneSymbol\uff09\u3002\u7136\u540e\u4e5f\u5c06\u5176\u4fdd\u5b58\u4e3a\u5236\u8868\u7b26\u5206\u5272\u7684txt\u3002<\/p>\n<\/section>\n<section style=\"text-align: center;margin-top: 10px;margin-bottom: 10px;line-height: 0;\" powered-by=\"xiumi.us\">\n<section style=\"vertical-align: middle;display: inline-block;line-height: 0;\"><img decoding=\"async\" class=\"rich_pages wxw-img\" data-ratio=\"0.5159883720930233\" data-s=\"300,640\" src=\"https:\/\/i0.wp.com\/www.biocloudservice.com\/wordpress\/wp-content\/uploads\/2024\/06\/2_9jOicOyAAsndN4e7H4Xno0ec2mfibg.png?w=640\" onerror=\"this.src='https:\/\/mmbiz.qpic.cn\/mmbiz_png\/KDvR2NrGicSaNjXFo9CXZlB7kGOTMLRxJWgw1vY56xjGAGBor6g5vdNaOLS9jOicOyAAsndN4e7H4Xno0ec2mfibg\/640?wx_fmt=png'\" data-type=\"png\" data-w=\"688\" style=\"vertical-align: middle;width: 100%;\" data-recalc-dims=\"1\" \/><\/section>\n<\/section>\n<section style=\"padding-right: 12px;padding-left: 12px;\" powered-by=\"xiumi.us\">\n<p>\u7136\u540e\u5c31\u53ef\u4ee5\u5f00\u59cb\u5206\u6790\u4e86\u3002\u5927\u5bb6\u8ddf\u7740\u5c0f\u82b1\u4e00\u8d77\u6765\u64cd\u4f5c\u4e00\u904d\u5427\uff01<br \/><\/p>\n<p><br \/><\/p>\n<\/section>\n<section style=\"text-align: left;justify-content: flex-start;display: flex;flex-flow: row;margin-top: 10px;margin-bottom: 10px;transform: translate3d(-15px, 0px, 0px);\" powered-by=\"xiumi.us\">\n<section style=\"display: inline-block;vertical-align: middle;width: auto;min-width: 5%;flex: 0 0 auto;height: auto;align-self: center;\"><svg viewbox=\"0 0 1 1\" style=\"float:left;line-height:0;width:0;vertical-align:top;\"><\/svg><\/section>\n<section style=\"display: inline-block;vertical-align: middle;width: auto;align-self: center;flex: 0 0 auto;min-width: 5%;height: auto;background-color: rgb(160, 160, 160);padding: 13px;\">\n<section style=\"text-align: justify;color: rgb(62, 62, 62);font-size: 15px;\" powered-by=\"xiumi.us\">\n<p><strong>\u7b2c\u4e00\u6b65\uff1a\u8fdb\u5165\u5de5\u4f5c\u76ee\u5f55\u5e76\u52a0\u8f7d\u5206\u6790\u6240\u9700\u7684R\u5305<\/strong><\/p>\n<\/section>\n<\/section>\n<\/section>\n<section class=\"code-snippet__fix code-snippet__js\">\n<ul class=\"code-snippet__line-index code-snippet__js\">\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<\/ul>\n<pre class=\"code-snippet__js\" data-lang=\"r\"><code><span class=\"code-snippet_outer\">setwd(<span class=\"code-snippet__string\">\"\u4e09\u4e2a\u6587\u4ef6\u6240\u5728\u7684\u6587\u4ef6\u5939\"<\/span>) <span class=\"code-snippet__comment\">#\u8fdb\u5165\u5de5\u4f5c\u76ee\u5f55<\/span><\/span><\/code><code><span class=\"code-snippet_outer\">install.packages(<span class=\"code-snippet__string\">'e1071'<\/span>)<\/span><\/code><code><span class=\"code-snippet_outer\">install.packages(<span class=\"code-snippet__string\">'preprocessCore'<\/span>)<\/span><\/code><code><span class=\"code-snippet_outer\">library(e1071)<\/span><\/code><code><span class=\"code-snippet_outer\">library(preprocessCore)<\/span><\/code><code><span class=\"code-snippet_outer\">library(parallel) <span class=\"code-snippet__comment\">#\u5b89\u88c5\u5e76\u52a0\u8f7d\u6240\u9700R\u5305<\/span><\/span><\/code><\/pre>\n<\/section>\n<p powered-by=\"xiumi.us\"><br \/><\/p>\n<section style=\"text-align: left;justify-content: flex-start;display: flex;flex-flow: row;margin-top: 10px;margin-bottom: 10px;transform: translate3d(-15px, 0px, 0px);\" powered-by=\"xiumi.us\">\n<section style=\"display: inline-block;vertical-align: middle;width: auto;min-width: 5%;flex: 0 0 auto;height: auto;align-self: center;\"><svg viewbox=\"0 0 1 1\" style=\"float:left;line-height:0;width:0;vertical-align:top;\"><\/svg><\/section>\n<section style=\"display: inline-block;vertical-align: middle;width: auto;align-self: center;flex: 0 0 auto;min-width: 5%;height: auto;background-color: rgb(160, 160, 160);padding: 13px;\">\n<section style=\"text-align: justify;color: rgb(62, 62, 62);font-size: 15px;\" powered-by=\"xiumi.us\">\n<p><strong>\u7b2c\u4e8c\u6b65\uff1a\u8fdb\u884cCIBERSORT\u5206\u6790<\/strong><\/p>\n<\/section>\n<\/section>\n<\/section>\n<section class=\"code-snippet__fix code-snippet__js\">\n<ul class=\"code-snippet__line-index code-snippet__js\">\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<\/ul>\n<pre class=\"code-snippet__js\" data-lang=\"r\"><code><span class=\"code-snippet_outer\">source(<span class=\"code-snippet__string\">\"Cibersort.R\"<\/span>) <span class=\"code-snippet__comment\"># \u52a0\u8f7dR\u811a\u672c<\/span><\/span><\/code><code><span class=\"code-snippet_outer\">result1 <- CIBERSORT(<span class=\"code-snippet__string\">\"LM22.txt\"<\/span>, <span class=\"code-snippet__string\">\"expr.txt\"<\/span>, perm = <span class=\"code-snippet__number\">1000<\/span>, QN = <span class=\"code-snippet__built_in\">T<\/span>) <span class=\"code-snippet__comment\">#\u8fd0\u884cR\u811a\u672c\u8fdb\u884cCIBERSORT\u5206\u6790\uff1b<\/span><\/span><\/code><code><span class=\"code-snippet_outer\"><span class=\"code-snippet__comment\">#perm\uff1a\u8868\u793a\u7f6e\u6362\u6b21\u6570\uff0c\u6570\u5b57\u8d8a\u5927\u8fd0\u884c\u65f6\u95f4\u8d8a\u957f\uff0c\u4e00\u822c\u6587\u7ae0\u90fd\u8bbe\u7f6e\u4e3a1000\uff1b<\/span><\/span><\/code><code><span class=\"code-snippet_outer\"><span class=\"code-snippet__comment\">#QN\uff1a\u5982\u679c\u4e3a\u82af\u7247\u6570\u636e\u8fd9\u91cc\u8bbe\u4e3a\u201cT\u201d\uff1b\u5982\u679c\u4e3a\u6d4b\u5e8f\u6570\u636e\u8bbe\u4e3a\u201cF\u201d<\/span><\/span><\/code><code><span class=\"code-snippet_outer\">\u6700\u540e\u4f1a\u5728\u5de5\u4f5c\u76ee\u5f55\u4e0b\u81ea\u52a8\u751f\u6210\u7ed3\u679c\u6587\u4ef6\u201cCIBERSORT-Results.txt\u201d\u3002<\/span><\/code><\/pre>\n<\/section>\n<section style=\"padding-right: 12px;padding-left: 12px;\" powered-by=\"xiumi.us\">\n<p>\u6700\u540e\u4f1a\u5728\u5de5\u4f5c\u76ee\u5f55\u4e0b\u81ea\u52a8\u751f\u6210\u7ed3\u679c\u6587\u4ef6\u201cCIBERSORT-Results.txt\u201d\u3002<\/p>\n<\/section>\n<section style=\"text-align: center;margin-top: 10px;margin-bottom: 10px;line-height: 0;\" powered-by=\"xiumi.us\">\n<section style=\"vertical-align: middle;display: inline-block;line-height: 0;\"><img decoding=\"async\" class=\"rich_pages wxw-img\" data-ratio=\"0.47692307692307695\" data-s=\"300,640\" src=\"https:\/\/i0.wp.com\/www.biocloudservice.com\/wordpress\/wp-content\/uploads\/2024\/06\/3_nzLU0THocOmicibMSMBayW5GrLyAUg.png?w=640\" onerror=\"this.src='https:\/\/mmbiz.qpic.cn\/mmbiz_png\/KDvR2NrGicSaNjXFo9CXZlB7kGOTMLRxJ5rAhpNgrqJ1qjiaOq3GAzZTwmJ5nzLU0THocOmicibMSMBayW5GrLyAUg\/640?wx_fmt=png'\" data-type=\"png\" data-w=\"650\" style=\"vertical-align: middle;width: 100%;\" data-recalc-dims=\"1\" \/><\/section>\n<\/section>\n<section style=\"padding-right: 12px;padding-left: 12px;\" powered-by=\"xiumi.us\">\n<p style=\"text-indent: 0em;text-wrap: wrap;\">\u62ff\u5230\u7ed3\u679c\u6587\u4ef6\u4ee5\u540e\u6211\u4eec\u5c31\u53ef\u4ee5\u6839\u636e\u81ea\u5df1\u7814\u7a76\u7684\u5206\u7ec4\u60c5\u51b5\u6765\u7ed8\u5236\u7bb1\u7ebf\u56fe\uff0c\u770b\u5728\u4e24\u8005\u4e4b\u95f4\u5404\u514d\u75ab\u7ec6\u80de\u7684\u5dee\u5f02\u60c5\u51b5\u3002\u9996\u5148\u6211\u4eec\u8fd9\u91cc\u9664\u4e86\u4e0a\u9762\u5f97\u5230\u7684\u7ed3\u679c\u6587\u4ef6\uff0c\u8fd8\u9700\u8981\u51c6\u5907\u4e00\u4e2a\u5206\u7ec4\u6587\u4ef6\uff0c\u5982\u56fe\u6240\u793a\u3002<\/p>\n<\/section>\n<section style=\"text-align: center;margin-top: 10px;margin-bottom: 10px;line-height: 0;\" powered-by=\"xiumi.us\">\n<section style=\"vertical-align: middle;display: inline-block;line-height: 0;width: 60%;height: auto;\"><img decoding=\"async\" class=\"rich_pages wxw-img\" data-ratio=\"1.9664429530201342\" data-s=\"300,640\" src=\"https:\/\/i0.wp.com\/www.biocloudservice.com\/wordpress\/wp-content\/uploads\/2024\/06\/4_YKibHK1ofWQB3A32s3NiaTHyTupibg.png?w=640\" onerror=\"this.src='https:\/\/mmbiz.qpic.cn\/mmbiz_png\/KDvR2NrGicSaNjXFo9CXZlB7kGOTMLRxJwmbvia6sYBK3mIt50BMIic9ZHhEfAYKibHK1ofWQB3A32s3NiaTHyTupibg\/640?wx_fmt=png'\" data-type=\"png\" data-w=\"149\" style=\"vertical-align: middle;width: 100%;\" data-recalc-dims=\"1\" \/><\/section>\n<\/section>\n<p powered-by=\"xiumi.us\"><br \/><\/p>\n<section style=\"padding-right: 12px;padding-left: 12px;\" powered-by=\"xiumi.us\">\n<p>\u597d\u4e86\u4e00\u5207\u51c6\u5907\u5c31\u7eea\uff0c\u8ddf\u7740\u5c0f\u82b1\u4e00\u8d77\u6765\u7ed8\u5236\u7bb1\u7ebf\u56fe\u5427\uff01<\/p>\n<\/section>\n<section style=\"text-align: left;justify-content: flex-start;display: flex;flex-flow: row;margin-top: 10px;margin-bottom: 10px;transform: translate3d(-15px, 0px, 0px);\" powered-by=\"xiumi.us\">\n<section style=\"display: inline-block;vertical-align: middle;width: auto;min-width: 5%;flex: 0 0 auto;height: auto;align-self: center;\"><svg viewbox=\"0 0 1 1\" style=\"float:left;line-height:0;width:0;vertical-align:top;\"><\/svg><\/section>\n<section style=\"display: inline-block;vertical-align: middle;width: auto;align-self: center;flex: 0 0 auto;min-width: 5%;height: auto;background-color: rgba(224, 225, 178, 0.47);padding: 13px;\">\n<section style=\"text-align: justify;color: rgb(125, 127, 90);\" powered-by=\"xiumi.us\">\n<p><strong>\u7b2c\u4e00\u6b65\uff1a\u52a0\u8f7d\u5206\u6790\u6240\u9700R\u5305\u4ee5\u53ca\u5bfc\u5165\u6570\u636e<\/strong><\/p>\n<\/section>\n<\/section>\n<\/section>\n<section class=\"code-snippet__fix code-snippet__js\">\n<ul class=\"code-snippet__line-index code-snippet__js\">\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<\/ul>\n<pre class=\"code-snippet__js\" data-lang=\"r\"><code><span class=\"code-snippet_outer\">library(tidyverse)<\/span><\/code><code><span class=\"code-snippet_outer\">b <- read.table(<span class=\"code-snippet__string\">\"group.txt\"<\/span>,sep = <span class=\"code-snippet__string\">\"t\"<\/span>,row.names = <span class=\"code-snippet__number\">1<\/span>,check.names = <span class=\"code-snippet__built_in\">F<\/span>,header = <span class=\"code-snippet__built_in\">T<\/span>)<\/span><\/code><code><span class=\"code-snippet_outer\">a <- read.table(<span class=\"code-snippet__string\">\"CIBERSORT-Results.txt\"<\/span>,sep = <span class=\"code-snippet__string\">\"t\"<\/span>,row.names = <span class=\"code-snippet__number\">1<\/span>,check.names = <span class=\"code-snippet__built_in\">F<\/span>,header = <span class=\"code-snippet__built_in\">T<\/span>)<\/span><\/code><\/pre>\n<\/section>\n<p powered-by=\"xiumi.us\"><br \/><\/p>\n<section style=\"text-align: left;justify-content: flex-start;display: flex;flex-flow: row;margin-top: 10px;margin-bottom: 10px;transform: translate3d(-15px, 0px, 0px);\" powered-by=\"xiumi.us\">\n<section style=\"display: inline-block;vertical-align: middle;width: auto;min-width: 5%;flex: 0 0 auto;height: auto;align-self: center;\"><svg viewbox=\"0 0 1 1\" style=\"float:left;line-height:0;width:0;vertical-align:top;\"><\/svg><\/section>\n<section style=\"display: inline-block;vertical-align: middle;width: auto;align-self: center;flex: 0 0 auto;min-width: 5%;height: auto;background-color: rgba(224, 225, 178, 0.47);padding: 13px;\">\n<section style=\"font-size: 12px;text-align: justify;color: rgb(125, 127, 90);\" powered-by=\"xiumi.us\">\n<p><strong>\u7b2c\u4e8c\u6b65\uff1a\u5bf9\u6570\u636e\u8fdb\u884c\u4e00\u4e2a\u7b80\u5355\u5904\u7406\uff0c\u4f7f\u5176\u80fd\u7528\u4e8e\u540e\u7eed\u5206\u6790<\/strong><\/p>\n<\/section>\n<\/section>\n<\/section>\n<section style=\"padding-right: 12px;padding-left: 12px;\" powered-by=\"xiumi.us\">\n<p>\u5728\u6211\u4eec\u514d\u75ab\u6d78\u6da6\u5206\u6790\u5f97\u5230\u7684\u7ed3\u679c\u6587\u4ef6\u6700\u540e\u6709\u4e09\u5217\u5185\u5bb9\u201cP-value\uff0cCorrelation\u548cRMSE\u201d\u540e\u7eed\u5206\u6790\u662f\u7528\u4e0d\u5230\u7684\uff0c\u6240\u4ee5\u6211\u4eec\u9700\u8981\u5c06\u5176\u5220\u6389\u3002<\/p>\n<p>a <- a[,1:22] #\u53bb\u9664\u6d78\u6da6\u5206\u6790\u7ed3\u679c\u6587\u4ef6\u540e\u4e09\u5217<\/p>\n<\/section>\n<section style=\"text-align: center;margin-top: 10px;margin-bottom: 10px;line-height: 0;\" powered-by=\"xiumi.us\">\n<section style=\"vertical-align: middle;display: inline-block;line-height: 0;width: 100%;height: auto;\"><img decoding=\"async\" class=\"rich_pages wxw-img\" data-ratio=\"0.9731903485254692\" data-s=\"300,640\" src=\"https:\/\/i0.wp.com\/www.biocloudservice.com\/wordpress\/wp-content\/uploads\/2024\/06\/5_gWW2judBr7AJEicU7gYVS11ZR3k2QA.png?w=640\" onerror=\"this.src='https:\/\/mmbiz.qpic.cn\/mmbiz_png\/KDvR2NrGicSaNjXFo9CXZlB7kGOTMLRxJREpDZHlVLapic2wc8uqxX1OusvgWW2judBr7AJEicU7gYVS11ZR3k2QA\/640?wx_fmt=png'\" data-type=\"png\" data-w=\"373\" style=\"vertical-align: middle;width: 100%;\" data-recalc-dims=\"1\" \/><\/section>\n<\/section>\n<p powered-by=\"xiumi.us\"><br \/><\/p>\n<section style=\"padding-right: 12px;padding-left: 12px;\" powered-by=\"xiumi.us\">\n<p>\u7136\u540e\u6211\u4eec\u8fd8\u9700\u8981\u5224\u65ad\u4e00\u4e0b\uff0c\u4e24\u4e2a\u6587\u4ef6\u4e2d\u6837\u672c\u7684\u987a\u5e8f\u662f\u5426\u4e00\u81f4\uff0c\u56e0\u4e3a\u540e\u9762\u9700\u8981\u5c06\u4e24\u4e2a\u6587\u4ef6\u7684\u4fe1\u606f\u8fdb\u884c\u5408\u5e76\uff0c\u5982\u679c\u4e0d\u662f\u4e00\u81f4\u7684\u4f1a\u5bfc\u81f4\u5206\u6790\u9519\u8bef\u3002<\/p>\n<p>identical(rownames(a),rownames(b)) #\u5224\u65ad\u4e24\u4e2a\u6587\u4ef6\u4e2d\u6837\u672c\u987a\u5e8f\u662f\u5426\u4e00\u81f4\uff0c\u8fd4\u56de\u503c\u4e3a\u201cTRUE\u201d\uff0c\u5219\u662f\u4e00\u81f4\u7684\u3002<\/p>\n<\/section>\n<section style=\"text-align: center;margin-top: 10px;margin-bottom: 10px;line-height: 0;\" powered-by=\"xiumi.us\">\n<section style=\"vertical-align: middle;display: inline-block;line-height: 0;\"><img decoding=\"async\" class=\"rich_pages wxw-img\" data-ratio=\"0.06551724137931035\" data-s=\"300,640\" src=\"https:\/\/i0.wp.com\/www.biocloudservice.com\/wordpress\/wp-content\/uploads\/2024\/06\/6_cibLHuxiaq0FhkL7ala7BVtBVQb13w.png?w=640\" onerror=\"this.src='https:\/\/mmbiz.qpic.cn\/mmbiz_png\/KDvR2NrGicSaNjXFo9CXZlB7kGOTMLRxJOsNcw7f8EV9wGTgwjxZJxF1ITKicibLHuxiaq0FhkL7ala7BVtBVQb13w\/640?wx_fmt=png'\" data-type=\"png\" data-w=\"580\" style=\"vertical-align: middle;width: 100%;\" data-recalc-dims=\"1\" \/><\/section>\n<\/section>\n<section class=\"code-snippet__fix code-snippet__js\">\n<ul class=\"code-snippet__line-index code-snippet__js\">\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<\/ul>\n<pre class=\"code-snippet__js\" data-lang=\"r\"><code><span class=\"code-snippet_outer\"><span class=\"code-snippet__built_in\">class<\/span>(b$group)<\/span><\/code><code><span class=\"code-snippet_outer\">a$group <- b$group <span class=\"code-snippet__comment\">#\u5c06\u5206\u7ec4\u4fe1\u606f\u6dfb\u52a0\u5230a\u540e\u9762<\/span><\/span><\/code><code><span class=\"code-snippet_outer\">a <- a %>% rownames_to_column(<span class=\"code-snippet__string\">\"sample\"<\/span>) <span class=\"code-snippet__comment\">#\u628a\u884c\u540d\u53d8\u6210\u4e00\u5217\uff0c\u5e76\u52a0\u4e0a\u201csample\u201d<\/span><\/span><\/code><code><span class=\"code-snippet_outer\">library(ggsci)<\/span><\/code><code><span class=\"code-snippet_outer\">library(tidyr)<\/span><\/code><code><span class=\"code-snippet_outer\">library(ggpubr)<\/span><\/code><code><span class=\"code-snippet_outer\">b <- gather(a,key=CIBERSORT,value = Proportion,-<span class=\"code-snippet__built_in\">c<\/span>(group,sample))<\/span><\/code><code><span class=\"code-snippet_outer\"><span class=\"code-snippet__comment\">#\u7ed8\u5236\u7bb1\u7ebf\u56fe<\/span><\/span><\/code><code><span class=\"code-snippet_outer\">ggboxplot(b, x = <span class=\"code-snippet__string\">\"CIBERSORT\"<\/span>, y = <span class=\"code-snippet__string\">\"Proportion\"<\/span>,<\/span><\/code><code><span class=\"code-snippet_outer\">fill = <span class=\"code-snippet__string\">\"group\"<\/span>, palette = <span class=\"code-snippet__string\">\"lancet\"<\/span>)+<\/span><\/code><code><span class=\"code-snippet_outer\">stat_compare_means(aes(group = group),<\/span><\/code><code><span class=\"code-snippet_outer\">method = <span class=\"code-snippet__string\">\"wilcox.test\"<\/span>,<\/span><\/code><code><span class=\"code-snippet_outer\">label = <span class=\"code-snippet__string\">\"p.signif\"<\/span>,<\/span><\/code><code><span class=\"code-snippet_outer\">symnum.args=<span class=\"code-snippet__built_in\">list<\/span>(cutpoints = <span class=\"code-snippet__built_in\">c<\/span>(<span class=\"code-snippet__number\">0<\/span>, <span class=\"code-snippet__number\">0.001<\/span>, <span class=\"code-snippet__number\">0.01<\/span>, <span class=\"code-snippet__number\">0.05<\/span>, <span class=\"code-snippet__number\">1<\/span>),<\/span><\/code><code><span class=\"code-snippet_outer\">symbols = <span class=\"code-snippet__built_in\">c<\/span>(<span class=\"code-snippet__string\">\"***\"<\/span>,<span class=\"code-snippet__string\">\"*\"<\/span>,<span class=\"code-snippet__string\">\"ns\"<\/span>)))+<\/span><\/code><code><span class=\"code-snippet_outer\">theme(text = element_text(size=<span class=\"code-snippet__number\">10<\/span>),<\/span><\/code><code><span class=\"code-snippet_outer\">axis.text.x = element_text(angle=<span class=\"code-snippet__number\">45<\/span>, hjust=<span class=\"code-snippet__number\">1<\/span>))<\/span><\/code><code><span class=\"code-snippet_outer\">dev.off()<\/span><\/code><\/pre>\n<\/section>\n<p powered-by=\"xiumi.us\"><br \/><\/p>\n<section style=\"padding-right: 12px;padding-left: 12px;\" powered-by=\"xiumi.us\">\n<p>\u6700\u540e\u6211\u4eec\u5c31\u80fd\u5f97\u5230\u60f3\u8981\u7684\u7ed3\u679c\u4e86\u3002<br \/><\/p>\n<\/section>\n<section style=\"text-align: center;margin-top: 10px;margin-bottom: 10px;line-height: 0;\" powered-by=\"xiumi.us\">\n<section style=\"vertical-align: middle;display: inline-block;line-height: 0;\"><img decoding=\"async\" class=\"rich_pages wxw-img\" data-ratio=\"0.8729050279329609\" data-s=\"300,640\" src=\"https:\/\/i0.wp.com\/www.biocloudservice.com\/wordpress\/wp-content\/uploads\/2024\/06\/7_ZKqiazic8HMkGdliaicFqhmks90icw.png?w=640\" onerror=\"this.src='https:\/\/mmbiz.qpic.cn\/mmbiz_png\/KDvR2NrGicSaNjXFo9CXZlB7kGOTMLRxJ376MpPjW0tKOibBHEX2GWicOfeMYu48ZKqiazic8HMkGdliaicFqhmks90icw\/640?wx_fmt=png'\" data-type=\"png\" data-w=\"716\" style=\"vertical-align: middle;width: 100%;\" data-recalc-dims=\"1\" \/><\/section>\n<\/section>\n<p powered-by=\"xiumi.us\"><br \/><\/p>\n<section style=\"text-align: left;justify-content: flex-start;display: flex;flex-flow: row;margin-top: 10px;margin-bottom: 10px;\" powered-by=\"xiumi.us\">\n<section style=\"display: inline-block;width: 98%;vertical-align: top;align-self: flex-start;flex: 0 0 auto;height: auto;border-style: solid;border-width: 2px;border-color: rgb(160, 160, 160);padding: 27px;\">\n<section style=\"text-align: justify;line-height: 1.6;letter-spacing: 0px;padding-right: 6px;padding-left: 6px;\" powered-by=\"xiumi.us\">\n<p>\u597d\u4e86!\u4eca\u5929\u7684\u5185\u5bb9\u5206\u4eab\u5c31\u5230\u8fd9\u91cc\u4e86\u3002\u5927\u5bb6\u6709\u4efb\u4f55\u95ee\u9898\u90fd\u53ef\u4ee5\u7559\u8a00\u548c\u5c0f\u82b1\u8ba8\u8bba\u54e6\uff01\u6211\u4eec\u4e0b\u671f\u518d\u89c1\uff01<\/p>\n<p><br \/><\/p>\n<p>\u6b22\u8fce\u4f7f\u7528\uff1a\u4e91\u751f\u4fe1 – \u5b66\u751f\u7269\u4fe1\u606f\u5b66 (biocloudservice.com)<\/p>\n<p><br \/><\/p>\n<p>\u5982\u679c\u60f3\u7528\u670d\u52a1\u5668\u53ef\u4ee5\u8054\u7cfb\u5fae\u4fe1\uff1a18502195490\uff08\u5feb\u6765\u8054\u7cfb\u6211\u4eec\u4f7f\u7528\u5427\uff01\uff09<\/p>\n<\/section>\n<section style=\"text-align: right;justify-content: flex-end;display: flex;flex-flow: row;transform: translate3d(40px, 0px, 0px);margin-bottom: -40px;\" powered-by=\"xiumi.us\">\n<section style=\"display: inline-block;width: auto;vertical-align: top;align-self: flex-start;flex: 0 0 auto;min-width: 5%;height: auto;\">\n<section style=\"transform: rotateZ(45deg);\" powered-by=\"xiumi.us\">\n<section style=\"text-align: center;\">\n<section style=\"display: inline-block;width: 26px;height: 26px;vertical-align: top;overflow: hidden;background-color: rgb(255, 255, 255);border-left: 1px solid rgb(160, 160, 160);border-bottom-left-radius: 0px;\">\n<section style=\"text-align: justify;\" powered-by=\"xiumi.us\">\n<p><br \/><\/p>\n<\/section>\n<\/section>\n<\/section>\n<\/section>\n<\/section>\n<\/section>\n<\/section>\n<\/section>\n<section style=\"padding-right: 12px;padding-left: 12px;\" powered-by=\"xiumi.us\">\n<p><a target=\"_blank\" href=\"https:\/\/mp.weixin.qq.com\/s?__biz=MzAwNjE0MDY3MQ==&mid=2650761303&idx=2&sn=6f73471d1e82c56c0b2160d0fcd32d53&scene=21#wechat_redirect\" textvalue=\"\" linktype=\"image\" imgurl=\"https:\/\/mmbiz.qpic.cn\/mmbiz_jpg\/KDvR2NrGicSYCoxhZfqr5L0fxy3C9eSFdt72DV7zqsmrNaiaaoOhic3sHzUpBN4r4MaBCk9p9v16yZwvMvS5nM7sQ\/0?wx_fmt=jpeg\" imgdata=\"[object Object]\" tab=\"innerlink\" data-linktype=\"1\" rel=\"noopener\"><span class=\"js_jump_icon h5_image_link\"><img decoding=\"async\" class=\"rich_pages wxw-img\" data-galleryid=\"\" data-ratio=\"0.35083798882681566\" data-s=\"300,640\" src=\"https:\/\/i0.wp.com\/www.biocloudservice.com\/wordpress\/wp-content\/uploads\/2024\/06\/8_pBN4r4MaBCk9p9v16yZwvMvS5nM7sQ-6.jpg?w=640\" onerror=\"this.src='https:\/\/mmbiz.qpic.cn\/mmbiz_jpg\/KDvR2NrGicSYCoxhZfqr5L0fxy3C9eSFdt72DV7zqsmrNaiaaoOhic3sHzUpBN4r4MaBCk9p9v16yZwvMvS5nM7sQ\/640?wx_fmt=jpeg'\" data-type=\"jpeg\" data-w=\"895\" style=\"\" data-recalc-dims=\"1\" \/><\/span><\/a><br \/><\/p>\n<p style=\"text-align: center;\"><img decoding=\"async\" class=\"rich_pages wxw-img\" data-galleryid=\"\" data-ratio=\"0.3488888888888889\" data-s=\"300,640\" src=\"https:\/\/i0.wp.com\/www.biocloudservice.com\/wordpress\/wp-content\/uploads\/2024\/06\/9_wGGHoIUWPWSIgBgzuWA7zggZhslM2g.jpg?w=640\" onerror=\"this.src='https:\/\/mmbiz.qpic.cn\/mmbiz_jpg\/KDvR2NrGicSbGdkTKlXI3tbocicP8GUCzibJV5ibjQs6D7lQhs1pnDYZQiauBwGGHoIUWPWSIgBgzuWA7zggZhslM2g\/640?wx_fmt=jpeg'\" data-type=\"jpeg\" data-w=\"900\" style=\"\" data-recalc-dims=\"1\" \/><\/p>\n<p>(\u70b9\u51fb\u9605\u8bfb\u539f\u6587\u8df3\u8f6c\uff09<\/p>\n<\/section>\n<section style=\"text-align: left;margin: 10px 0%;\" powered-by=\"xiumi.us\">\n<section style=\"display: inline-block;min-width: 10%;vertical-align: top;padding-right: 20px;\">\n<section style=\"transform: translate3d(20px, 0px, 0px);margin: 10px 0% -30px;\" powered-by=\"xiumi.us\">\n<section style=\"color: rgb(62, 62, 62);text-align: justify;font-size: 12px;\">\n<p><strong><img decoding=\"async\" loading=\"lazy\" data-ratio=\"0.866\" data-s=\"300,640\" src=\"https:\/\/i0.wp.com\/www.biocloudservice.com\/wordpress\/wp-content\/uploads\/2024\/06\/10_uwmmcKK7WicIjk7K6wUXbvLicfkDlg.gif?resize=18%2C15\" onerror=\"this.src='https:\/\/mmbiz.qpic.cn\/mmbiz_gif\/KDvR2NrGicSaNjXFo9CXZlB7kGOTMLRxJv8liaRicibuX8INkg3t78ldyTAspmuwmmcKK7WicIjk7K6wUXbvLicfkDlg\/640?wx_fmt=gif'\" data-type=\"gif\" data-w=\"500\" height=\"15\" style=\"width: 18px;height: 15px;\" width=\"18\" data-recalc-dims=\"1\" \/> \u70b9\u4e00\u4e0b\u9605\u8bfb\u539f\u6587\u4e86\u89e3\u66f4\u591a\u8d44\u8baf<\/strong><\/p>\n<\/section>\n<\/section>\n<section style=\"\" powered-by=\"xiumi.us\">\n<section style=\"display: inline-block;width: 50px;height: 40px;vertical-align: top;overflow: hidden;\">\n<section style=\"text-align: center;margin-right: 0%;margin-left: 0%;line-height: 0;\" powered-by=\"xiumi.us\">\n<section style=\"vertical-align: middle;display: inline-block;line-height: 0;\"><img decoding=\"async\" data-ratio=\"0.7709090909090909\" data-s=\"300,640\" src=\"https:\/\/i0.wp.com\/www.biocloudservice.com\/wordpress\/wp-content\/uploads\/2024\/06\/11_nfaEzY4KtiakkTcRbqHr0ociaU7cQw.png?w=640\" onerror=\"this.src='https:\/\/mmbiz.qpic.cn\/mmbiz_png\/KDvR2NrGicSaNjXFo9CXZlB7kGOTMLRxJ1lx5kBXggZPBQaxJvkxhGNYmZjnfaEzY4KtiakkTcRbqHr0ociaU7cQw\/640?wx_fmt=png'\" data-type=\"png\" data-w=\"275\" style=\"vertical-align: middle;width: 100%;\" data-recalc-dims=\"1\" \/><\/section>\n<\/section>\n<\/section>\n<\/section>\n<\/section>\n<\/section>\n<\/section>\n<p style=\"display: none;margin-bottom: 24px;\"><mp-style-type data-value=\"3\"><\/mp-style-type><\/p>\n<div class=\"msg_source_url\"><a href=\"http:\/\/www.biocloudservice.com\/home.html\" target=\"_blank\" rel=\"noopener\">\u9605\u8bfb\u539f\u6587<\/a><\/div>\n<p><\/content><\/p>\n<div class=\"msg_source_url\"><a href=\"http:\/\/www.biocloudservice.com\/home.html\" target=\"_blank\" rel=\"noopener\">\u9605\u8bfb\u539f\u6587<\/a><\/div>\n<\/div>\n<p><\/body><br \/>\n<\/html><\/p>\n","protected":false},"excerpt":{"rendered":"<p>\u4e00\u5206\u949f\u6559\u4f1a\u4f60\u5728R\u8bed\u8a00\u4e2d\u4f7f\u7528CIBERSORT\u8fdb\u884c\u514d\u75ab\u6d78\u6da6\u5206\u6790 \u5c0f\u82b1 \u751f\u4fe1\u679c & […]<\/p>\n","protected":false},"author":1,"featured_media":0,"comment_status":"closed","ping_status":"","sticky":false,"template":"","format":"standard","meta":{"jetpack_post_was_ever_published":false,"_jetpack_newsletter_access":""},"categories":[1],"tags":[],"jetpack_featured_media_url":"","_links":{"self":[{"href":"http:\/\/www.biocloudservice.com\/wordpress\/index.php?rest_route=\/wp\/v2\/posts\/54078"}],"collection":[{"href":"http:\/\/www.biocloudservice.com\/wordpress\/index.php?rest_route=\/wp\/v2\/posts"}],"about":[{"href":"http:\/\/www.biocloudservice.com\/wordpress\/index.php?rest_route=\/wp\/v2\/types\/post"}],"author":[{"embeddable":true,"href":"http:\/\/www.biocloudservice.com\/wordpress\/index.php?rest_route=\/wp\/v2\/users\/1"}],"replies":[{"embeddable":true,"href":"http:\/\/www.biocloudservice.com\/wordpress\/index.php?rest_route=%2Fwp%2Fv2%2Fcomments&post=54078"}],"version-history":[{"count":1,"href":"http:\/\/www.biocloudservice.com\/wordpress\/index.php?rest_route=\/wp\/v2\/posts\/54078\/revisions"}],"predecessor-version":[{"id":54090,"href":"http:\/\/www.biocloudservice.com\/wordpress\/index.php?rest_route=\/wp\/v2\/posts\/54078\/revisions\/54090"}],"wp:attachment":[{"href":"http:\/\/www.biocloudservice.com\/wordpress\/index.php?rest_route=%2Fwp%2Fv2%2Fmedia&parent=54078"}],"wp:term":[{"taxonomy":"category","embeddable":true,"href":"http:\/\/www.biocloudservice.com\/wordpress\/index.php?rest_route=%2Fwp%2Fv2%2Fcategories&post=54078"},{"taxonomy":"post_tag","embeddable":true,"href":"http:\/\/www.biocloudservice.com\/wordpress\/index.php?rest_route=%2Fwp%2Fv2%2Ftags&post=54078"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}