{"id":54202,"date":"2024-06-16T13:46:38","date_gmt":"2024-06-16T05:46:38","guid":{"rendered":"http:\/\/www.biocloudservice.com\/wordpress\/?p=54202"},"modified":"2024-06-16T13:46:38","modified_gmt":"2024-06-16T05:46:38","slug":"%e4%bb%8a%e6%97%a5%e7%a5%9e%e5%99%a8devtools%ef%bc%9a%e4%b8%80%e9%94%ae%e5%ae%89%e8%a3%85github%e4%b8%8a%e6%89%80%e6%9c%89%e7%94%9f%e4%bf%a1%e5%b7%a5%e5%85%b7%e5%8c%85","status":"publish","type":"post","link":"http:\/\/www.biocloudservice.com\/wordpress\/?p=54202","title":{"rendered":"\u4eca\u65e5\u795e\u5668devtools\uff1a\u4e00\u952e\u5b89\u88c5github\u4e0a\u6240\u6709\u751f\u4fe1\u5de5\u5177\u5305"},"content":{"rendered":"


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onerror=\"this.src='https:\/\/mmbiz.qpic.cn\/sz_mmbiz_jpg\/zcicibWZessAwyrj7kbUR3ULG9ZUbLrLkgibzL8qUpQROfe8ebc3gNSnu1dIlmBAWe69EMUPMhNEgrv6NXX85lJxg\/640?wx_fmt=jpeg'\" data-type=\"jpeg\" data-w=\"1080\" style=\"\" data-recalc-dims=\"1\" \/><\/p>\n<\/section>\n<section powered-by=\"xiumi.us\">\n<section>\n<section powered-by=\"xiumi.us\">\n<section data-mpa-template=\"t\" mpa-from-tpl=\"t\">\n<section data-mpa-template=\"t\" mpa-from-tpl=\"t\">\n<section mpa-from-tpl=\"t\">\n<section powered-by=\"xiumi.us\" mpa-from-tpl=\"t\">\n<section mpa-from-tpl=\"t\">\n<section powered-by=\"xiumi.us\" mpa-from-tpl=\"t\">\n<section data-mpa-template=\"t\" mpa-from-tpl=\"t\">\n<section data-mpa-template=\"t\" mpa-from-tpl=\"t\">\n<section style=\"text-align: justify;font-size: 16px;\" mpa-from-tpl=\"t\">\n<section style=\"text-align: left;justify-content: flex-start;display: flex;flex-flow: row;margin-top: 10px;margin-bottom: 10px;\" powered-by=\"xiumi.us\" mpa-from-tpl=\"t\">\n<section style=\"display: inline-block;vertical-align: bottom;width: auto;align-self: flex-end;flex: 0 0 auto;border-style: solid;border-width: 0px 0px 7px;border-bottom-color: rgb(175, 225, 255);min-width: 5%;height: auto;\" mpa-from-tpl=\"t\">\n<section style=\"text-align: justify;font-size: 20px;\" powered-by=\"xiumi.us\" mpa-from-tpl=\"t\">\n<p><strong mpa-from-tpl=\"t\" mpa-is-content=\"t\">devtools\u662f\u4f55\u65b9\u795e\u5723<\/strong><\/p>\n<\/section>\n<\/section>\n<section style=\"display: inline-block;vertical-align: bottom;width: auto;min-width: 5%;flex: 0 0 auto;height: auto;align-self: flex-end;\" mpa-from-tpl=\"t\">\n<section style=\"transform: perspective(0px);transform-style: flat;\" powered-by=\"xiumi.us\" mpa-from-tpl=\"t\">\n<section style=\"transform: translate3d(5px, 0px, 0px) rotateX(180deg);\" mpa-from-tpl=\"t\">\n<section style=\"display: inline-block;width: 6px;height: 6px;vertical-align: top;overflow: hidden;border-radius: 460px;background-color: rgb(244, 171, 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14px;\">devtools\u662fR\u8bed\u8a00\u4e2d\u5f88\u6709\u7528\u7684\u4e00\u4e2a\u5305,\u5b83\u53ef\u4ee5\u76f4\u63a5\u4eceGitHub\u4e0a\u4e0b\u8f7d\u548c\u5b89\u88c5\u5176\u4ed6R\u5305\u53ca\u5176\u4f9d\u8d56\u5173\u7cfb\u3002\u5728\u751f\u7269\u4fe1\u606f\u5b66\u7814\u7a76\u4e2d,\u6211\u4eec\u7ecf\u5e38\u9700\u8981\u4f7f\u7528\u5f88\u591a\u4e0d\u540c\u7684\u751f\u7269\u4fe1\u606f\u5b66\u8f6f\u4ef6\u5305\u6765\u8fdb\u884c\u6570\u636e\u5206\u6790,\u4f8b\u5982\u8fdb\u884c\u57fa\u56e0\u7ec4\u5b66\u548c\u8f6c\u5f55\u7ec4\u5b66\u5206\u6790\u65f6\u9700\u8981\u4f7f\u7528DESeq2\u3001edgeR\u7b49\u5206\u6790\u5305;\u8fdb\u884c\u8fdb\u5316\u6811\u5206\u6790\u9700\u8981\u4f7f\u7528ape\u3001phangorn\u7b49\u5305;\u8fdb\u884c\u51fd\u6570\u9884\u6d4b\u548c\u57fa\u56e0\u7ec4\u5b9a\u4f4d\u9700\u8981\u4f7f\u7528hmmr\u548cblast\u7b49\u5305\u3002\u800c\u8fd9\u4e9b\u5305\u53ef\u80fd\u8fd8\u4f9d\u8d56\u5176\u4ed6\u4e00\u4e9b\u57fa\u7840\u5305,\u5982\u679c\u76f4\u63a5\u5728R\u4e2d\u5b89\u88c5\u53ef\u80fd\u4f1a\u56e0\u4e3a\u4f9d\u8d56\u5173\u7cfb\u95ee\u9898\u7b49\u5404\u79cd\u539f\u56e0\u800c\u5b89\u88c5\u4e0d\u6210\u529f\u3002\u6b64\u65f6\u4f7f\u7528devtools\u5c31\u53ef\u4ee5\u5f88\u65b9\u4fbf\u5730\u4e00\u6b21\u6027\u4eceGitHub\u76f4\u63a5\u4e0b\u8f7d\u5e76\u5b89\u88c5\u8fd9\u4e9b\u5305\u53ca\u5176\u6240\u6709\u4f9d\u8d56\u5173\u7cfb\u3002\u9664\u6b64\u4e4b\u5916”devtools” \u4e5f\u662f\u4e00\u4e2a\u5728R\u8bed\u8a00\u4e2d\u5e7f\u6cdb\u4f7f\u7528\u5de5\u5177\uff0c\u5b83\u63d0\u4f9b\u4e86\u4e30\u5bcc\u7684\u529f\u80fd\u548c\u51fd\u6570\uff0c\u7528\u4e8e\u5e2e\u52a9\u4f60\u521b\u5efa\u3001\u6d4b\u8bd5\u548c\u53d1\u5e03\u4f60\u7684R\u5305\u3002<\/span><\/p>\n<\/section>\n<\/section>\n<\/section>\n<\/section>\n<\/section>\n<\/section>\n<\/section>\n<\/section>\n<\/section>\n<section style=\"margin-top: 10px;margin-bottom: 10px;\" powered-by=\"xiumi.us\">\n<section style=\"padding-left: 1em;padding-right: 1em;display: inline-block;text-align: center;\"><span style=\"display: inline-block;padding: 0.3em 0.5em;border-radius: 0.5em;text-shadow: rgb(204, 204, 204) 4px 3px;color: rgb(249, 110, 87);\" title=\"\" opera-tn-ra-cell=\"_$.pages:0.layers:0.comps:7.title1\"><\/p>\n<p><strong>\u4ee5\u4e0b\u662f”devtools”\u7684\u4e00\u4e9b\u4e3b\u8981\u529f\u80fd\uff1a<\/strong><\/p>\n<p><\/span> <\/section>\n<section style=\"border-width: 1px;border-style: solid;border-color: rgb(192, 200, 209);margin-top: -1em;padding: 20px 10px 10px;background-color: rgb(239, 239, 239);text-align: center;\">\n<section style=\"text-align: justify;\" powered-by=\"xiumi.us\">\n<p><span style=\"font-size: 14px;\"><strong><span style=\"color: rgb(249, 110, 87);\">\u521b\u5efaR\u5305<\/span><\/strong>\uff1a<span style=\"letter-spacing: 0.034em;\">devtools\u63d0\u4f9b\u7684create()\u51fd\u6570\u53ef\u7528\u4e8e\u521b\u5efa\u65b0\u7684R\u5305\uff0c\u5305\u62ec\u81ea\u52a8\u521b\u5efa\u6587\u4ef6\u5939\u7ed3\u6784\u548c\u5fc5\u8981\u7684\u6587\u4ef6\u3002<\/span><\/span><\/p>\n<p><span style=\"font-size: 14px;\"><strong><span style=\"color: rgb(249, 110, 87);\">\u6d4b\u8bd5R\u5305<\/span><\/strong>\uff1a<span style=\"letter-spacing: 0.034em;\">devtools\u63d0\u4f9b\u7684test()\u51fd\u6570\u80fd\u591f\u8fd0\u884c\u4f60\u7684R\u5305\u4e2d\u7684\u6240\u6709\u6d4b\u8bd5\uff0c\u5e76\u63d0\u4f9b\u6709\u7528\u7684\u53cd\u9988\u3002<\/span><\/span><\/p>\n<p><span style=\"font-size: 14px;\"><strong><span style=\"color: rgb(249, 110, 87);\">\u53d1\u5e03R\u5305<\/span><\/strong>\uff1a<span style=\"letter-spacing: 0.034em;\">devtools\u80fd\u591f\u5e2e\u52a9\u4f60\u5c06\u4f60\u7684R\u5305\u53d1\u5e03\u5230CRAN\u6216\u5176\u4ed6\u5e73\u53f0\uff0c\u4f8b\u5982\uff1aGithub\u3002<\/span><\/span><\/p>\n<p><span style=\"font-size: 14px;\"><strong><span style=\"color: rgb(249, 110, 87);\">\u52a0\u8f7d\u548c\u91cd\u65b0\u52a0\u8f7dR\u5305<\/span><\/strong>\uff1a<span style=\"letter-spacing: 0.034em;\">devtools\u53ef\u4ee5\u5e2e\u52a9\u4f60\u5728\u5f00\u53d1\u8fc7\u7a0b\u4e2d\u5feb\u901f\u52a0\u8f7d\u6216\u91cd\u65b0\u52a0\u8f7d\u4f60\u7684R\u5305\u3002<\/span><\/span><\/p>\n<\/section>\n<\/section>\n<\/section>\n<section powered-by=\"xiumi.us\">\n<section>\n<section powered-by=\"xiumi.us\">\n<section data-mpa-template=\"t\" mpa-from-tpl=\"t\">\n<section data-mpa-template=\"t\" mpa-from-tpl=\"t\">\n<section style=\"text-align: justify;font-size: 16px;\" mpa-from-tpl=\"t\">\n<section style=\"text-align: left;justify-content: flex-start;display: flex;flex-flow: row;margin-top: 10px;margin-bottom: 10px;\" powered-by=\"xiumi.us\" mpa-from-tpl=\"t\">\n<section style=\"display: inline-block;vertical-align: bottom;width: auto;align-self: flex-end;flex: 0 0 auto;border-style: solid;border-width: 0px 0px 7px;border-bottom-color: rgb(175, 225, 255);min-width: 5%;height: auto;\" mpa-from-tpl=\"t\">\n<section style=\"text-align: justify;font-size: 20px;\" powered-by=\"xiumi.us\" mpa-from-tpl=\"t\">\n<p><strong mpa-from-tpl=\"t\" mpa-is-content=\"t\">\u5b89\u88c5\u53ca\u5e38\u7528\u529f\u80fd\u4ecb\u7ecd<\/strong><\/p>\n<\/section>\n<\/section>\n<\/section>\n<\/section>\n<\/section>\n<\/section>\n<\/section>\n<\/section>\n<\/section>\n<section style=\"margin-right: 0%;margin-left: 0%;text-align: left;justify-content: flex-start;display: flex;flex-flow: row;\" powered-by=\"xiumi.us\">\n<section style=\"display: inline-block;width: 100%;vertical-align: top;align-self: flex-start;flex: 0 0 auto;\">\n<section style=\"margin-right: 0%;margin-left: 0%;font-size: 11px;\" powered-by=\"xiumi.us\">\n<section style=\"display: inline-block;padding-right: 0.2em;padding-top: 0.5em;\">\n<section style=\"display: inline-block;vertical-align: top;width: 3em;height: 3em;border-width: 1px;border-style: solid;border-color: rgb(23, 23, 20);padding: 3px;border-radius: 100%;\">\n<section style=\"width: 100%;height: 100%;border-radius: 100%;background-color: rgb(23, 23, 20);text-align: center;color: rgb(255, 255, 255);font-size: 20px;line-height: 1.4;\">\n<p>1<\/p>\n<\/section>\n<\/section>\n<section style=\"display: inline-block;vertical-align: top;width: 6px;height: 6px;border-radius: 100%;margin-left: -0.5em;background-color: rgb(23, 23, 20);\"><svg viewbox=\"0 0 1 1\" style=\"float:left;line-height:0;width:0;vertical-align:top;\"><\/svg><\/section>\n<section style=\"display: inline-block;vertical-align: top;width: 3px;height: 3px;border-radius: 100%;margin-top: -0.22em;margin-left: 0.1em;background-color: rgb(23, 23, 20);\"><svg viewbox=\"0 0 1 1\" style=\"float:left;line-height:0;width:0;vertical-align:top;\"><\/svg><\/section>\n<\/section>\n<\/section>\n<section style=\"margin-right: 0%;margin-left: 0%;text-align: justify;justify-content: flex-start;display: flex;flex-flow: row;\" powered-by=\"xiumi.us\">\n<section style=\"display: inline-block;width: 100%;vertical-align: top;padding-left: 16px;border-width: 0px;align-self: flex-start;flex: 0 0 auto;\">\n<section style=\"justify-content: flex-start;display: flex;flex-flow: row;\" powered-by=\"xiumi.us\">\n<section style=\"display: inline-block;width: 100%;vertical-align: top;border-left: 2px dashed rgb(160, 160, 160);border-bottom-left-radius: 0px;padding-left: 10px;align-self: flex-start;flex: 0 0 auto;\">\n<section style=\"margin: -30px 0% 10px;justify-content: flex-start;display: flex;flex-flow: row;\" powered-by=\"xiumi.us\">\n<section style=\"display: inline-block;width: 100%;vertical-align: top;padding-left: 15px;align-self: flex-start;flex: 0 0 auto;\">\n<section style=\"margin-right: 0%;margin-left: 0%;text-align: center;\" powered-by=\"xiumi.us\">\n<section style=\"font-size: 18px;text-align: justify;\">\n<p><span style=\"font-size: 17px;\"><strong>\u5b89\u88c5\u53ca\u52a0\u8f7ddevtools\u5305<\/strong><\/span><\/p>\n<\/section>\n<\/section>\n<\/section>\n<\/section>\n<section style=\"margin-right: 0%;margin-bottom: 20px;margin-left: 0%;\" powered-by=\"xiumi.us\">\n<section>\n<p><span style=\"font-size: 14px;\">install.packages(“devtools”) # \u5b89\u88c5\u65b9\u6cd5<\/span><\/p>\n<p><span style=\"font-size: 14px;\">library(devtools) # \u52a0\u8f7d\u5305<\/span><\/p>\n<\/section>\n<\/section>\n<\/section>\n<\/section>\n<\/section>\n<\/section>\n<\/section>\n<\/section>\n<section style=\"margin-right: 0%;margin-left: 0%;text-align: left;justify-content: flex-start;display: flex;flex-flow: row;\" powered-by=\"xiumi.us\">\n<section style=\"display: inline-block;width: 100%;vertical-align: top;align-self: flex-start;flex: 0 0 auto;\">\n<section style=\"margin-right: 0%;margin-left: 0%;font-size: 11px;\" powered-by=\"xiumi.us\">\n<section style=\"display: inline-block;padding-right: 0.2em;padding-top: 0.5em;\">\n<section style=\"display: inline-block;vertical-align: top;width: 3em;height: 3em;border-width: 1px;border-style: solid;border-color: rgb(23, 23, 20);padding: 3px;border-radius: 100%;\">\n<section style=\"width: 100%;height: 100%;border-radius: 100%;background-color: rgb(23, 23, 20);text-align: center;color: rgb(255, 255, 255);font-size: 20px;line-height: 1.4;\">\n<p>2<\/p>\n<\/section>\n<\/section>\n<section style=\"display: inline-block;vertical-align: top;width: 6px;height: 6px;border-radius: 100%;margin-left: -0.5em;background-color: rgb(23, 23, 20);\"><svg viewbox=\"0 0 1 1\" style=\"float:left;line-height:0;width:0;vertical-align:top;\"><\/svg><\/section>\n<section style=\"display: inline-block;vertical-align: top;width: 3px;height: 3px;border-radius: 100%;margin-top: -0.22em;margin-left: 0.1em;background-color: rgb(23, 23, 20);\"><svg viewbox=\"0 0 1 1\" style=\"float:left;line-height:0;width:0;vertical-align:top;\"><\/svg><\/section>\n<\/section>\n<\/section>\n<section style=\"margin-right: 0%;margin-left: 0%;text-align: justify;justify-content: flex-start;display: flex;flex-flow: row;\" powered-by=\"xiumi.us\">\n<section style=\"display: inline-block;width: 100%;vertical-align: top;padding-left: 16px;border-width: 0px;align-self: flex-start;flex: 0 0 auto;\">\n<section style=\"justify-content: flex-start;display: flex;flex-flow: row;\" powered-by=\"xiumi.us\">\n<section style=\"display: inline-block;width: 100%;vertical-align: top;border-left: 2px dashed rgb(160, 160, 160);border-bottom-left-radius: 0px;padding-left: 10px;align-self: flex-start;flex: 0 0 auto;\">\n<section style=\"margin: -30px 0% 10px;justify-content: flex-start;display: flex;flex-flow: row;\" powered-by=\"xiumi.us\">\n<section style=\"display: inline-block;width: 100%;vertical-align: top;padding-left: 15px;align-self: flex-start;flex: 0 0 auto;\">\n<section style=\"margin-right: 0%;margin-left: 0%;text-align: center;\" powered-by=\"xiumi.us\">\n<section style=\"font-size: 18px;text-align: justify;\">\n<p><span style=\"font-size: 17px;\"><strong>\u521b\u5efa\u4e00\u4e2a\u65b0\u7684R\u5305<\/strong><\/span><\/p>\n<\/section>\n<\/section>\n<\/section>\n<\/section>\n<section style=\"margin-right: 0%;margin-bottom: 20px;margin-left: 0%;\" powered-by=\"xiumi.us\">\n<p><span style=\"font-size: 14px;\">devtools::create(“my_new_package”) # \u521b\u5efa\u4e00\u4e2a\u540d\u4e3amy_new_package\u7684\u65b0\u5305<\/span><\/p>\n<\/section>\n<\/section>\n<\/section>\n<\/section>\n<\/section>\n<\/section>\n<\/section>\n<section style=\"margin-right: 0%;margin-left: 0%;text-align: left;justify-content: flex-start;display: flex;flex-flow: row;\" powered-by=\"xiumi.us\">\n<section style=\"display: inline-block;width: 100%;vertical-align: top;align-self: flex-start;flex: 0 0 auto;\">\n<section style=\"margin-right: 0%;margin-left: 0%;font-size: 11px;\" powered-by=\"xiumi.us\">\n<section style=\"display: inline-block;padding-right: 0.2em;padding-top: 0.5em;\">\n<section style=\"display: inline-block;vertical-align: top;width: 3em;height: 3em;border-width: 1px;border-style: solid;border-color: rgb(23, 23, 20);padding: 3px;border-radius: 100%;\">\n<section style=\"width: 100%;height: 100%;border-radius: 100%;background-color: rgb(23, 23, 20);text-align: center;color: rgb(255, 255, 255);font-size: 20px;line-height: 1.4;\">\n<p>3<\/p>\n<\/section>\n<\/section>\n<section style=\"display: inline-block;vertical-align: top;width: 6px;height: 6px;border-radius: 100%;margin-left: -0.5em;background-color: rgb(23, 23, 20);\"><svg viewbox=\"0 0 1 1\" style=\"float:left;line-height:0;width:0;vertical-align:top;\"><\/svg><\/section>\n<section style=\"display: inline-block;vertical-align: top;width: 3px;height: 3px;border-radius: 100%;margin-top: -0.22em;margin-left: 0.1em;background-color: rgb(23, 23, 20);\"><svg viewbox=\"0 0 1 1\" style=\"float:left;line-height:0;width:0;vertical-align:top;\"><\/svg><\/section>\n<\/section>\n<\/section>\n<section style=\"margin-right: 0%;margin-left: 0%;text-align: justify;justify-content: flex-start;display: flex;flex-flow: row;\" powered-by=\"xiumi.us\">\n<section style=\"display: inline-block;width: 100%;vertical-align: top;padding-left: 16px;border-width: 0px;align-self: flex-start;flex: 0 0 auto;\">\n<section style=\"justify-content: flex-start;display: flex;flex-flow: row;\" powered-by=\"xiumi.us\">\n<section style=\"display: inline-block;width: 100%;vertical-align: top;border-left: 2px dashed rgb(160, 160, 160);border-bottom-left-radius: 0px;padding-left: 10px;align-self: flex-start;flex: 0 0 auto;\">\n<section style=\"margin: -30px 0% 10px;justify-content: flex-start;display: flex;flex-flow: row;\" powered-by=\"xiumi.us\">\n<section style=\"display: inline-block;width: 100%;vertical-align: top;padding-left: 15px;align-self: flex-start;flex: 0 0 auto;\">\n<section style=\"margin-right: 0%;margin-left: 0%;text-align: center;\" powered-by=\"xiumi.us\">\n<section style=\"font-size: 18px;text-align: justify;\">\n<p><span style=\"font-size: 17px;\"><strong>\u6784\u5efaR\u5305<\/strong><\/span><\/p>\n<\/section>\n<\/section>\n<\/section>\n<\/section>\n<section style=\"margin-right: 0%;margin-bottom: 20px;margin-left: 0%;\" powered-by=\"xiumi.us\">\n<p><span style=\"font-size: 14px;\">build(“mypackage”) # \u6784\u5efa\u4e00\u4e2a\u540d\u4e3amy_new_package\u7684\u65b0\u5305<\/span><\/p>\n<\/section>\n<\/section>\n<\/section>\n<\/section>\n<\/section>\n<\/section>\n<\/section>\n<section style=\"margin-right: 0%;margin-left: 0%;text-align: left;justify-content: flex-start;display: flex;flex-flow: row;\" powered-by=\"xiumi.us\">\n<section style=\"display: inline-block;width: 100%;vertical-align: top;align-self: flex-start;flex: 0 0 auto;\">\n<section style=\"margin-right: 0%;margin-left: 0%;font-size: 11px;\" powered-by=\"xiumi.us\">\n<section style=\"display: inline-block;padding-right: 0.2em;padding-top: 0.5em;\">\n<section style=\"display: inline-block;vertical-align: top;width: 3em;height: 3em;border-width: 1px;border-style: solid;border-color: rgb(23, 23, 20);padding: 3px;border-radius: 100%;\">\n<section style=\"width: 100%;height: 100%;border-radius: 100%;background-color: rgb(23, 23, 20);text-align: center;color: rgb(255, 255, 255);font-size: 20px;line-height: 1.4;\">\n<p>4<\/p>\n<\/section>\n<\/section>\n<section style=\"display: inline-block;vertical-align: top;width: 6px;height: 6px;border-radius: 100%;margin-left: -0.5em;background-color: rgb(23, 23, 20);\"><svg viewbox=\"0 0 1 1\" style=\"float:left;line-height:0;width:0;vertical-align:top;\"><\/svg><\/section>\n<section style=\"display: inline-block;vertical-align: top;width: 3px;height: 3px;border-radius: 100%;margin-top: -0.22em;margin-left: 0.1em;background-color: rgb(23, 23, 20);\"><svg viewbox=\"0 0 1 1\" style=\"float:left;line-height:0;width:0;vertical-align:top;\"><\/svg><\/section>\n<\/section>\n<\/section>\n<section style=\"margin-right: 0%;margin-left: 0%;text-align: justify;justify-content: flex-start;display: flex;flex-flow: row;\" powered-by=\"xiumi.us\">\n<section style=\"display: inline-block;width: 100%;vertical-align: top;padding-left: 16px;border-width: 0px;align-self: flex-start;flex: 0 0 auto;\">\n<section style=\"justify-content: flex-start;display: flex;flex-flow: row;\" powered-by=\"xiumi.us\">\n<section style=\"display: inline-block;width: 100%;vertical-align: top;border-left: 2px dashed rgb(160, 160, 160);border-bottom-left-radius: 0px;padding-left: 10px;align-self: flex-start;flex: 0 0 auto;\">\n<section style=\"margin: -30px 0% 10px;justify-content: flex-start;display: flex;flex-flow: row;\" powered-by=\"xiumi.us\">\n<section style=\"display: inline-block;width: 100%;vertical-align: top;padding-left: 15px;align-self: flex-start;flex: 0 0 auto;\">\n<section style=\"margin-right: 0%;margin-left: 0%;text-align: center;\" powered-by=\"xiumi.us\">\n<section style=\"font-size: 18px;text-align: justify;\">\n<p><span style=\"font-size: 17px;\"><strong>\u6d4b\u8bd5R\u5305<\/strong><\/span><\/p>\n<\/section>\n<\/section>\n<\/section>\n<\/section>\n<section style=\"margin-right: 0%;margin-bottom: 20px;margin-left: 0%;\" powered-by=\"xiumi.us\">\n<p><span style=\"font-size: 14px;\">devtools::test(“my_new_package”) # \u6d4b\u8bd5my_new_package\u5305<\/span><\/p>\n<\/section>\n<\/section>\n<\/section>\n<\/section>\n<\/section>\n<\/section>\n<\/section>\n<section style=\"margin-right: 0%;margin-left: 0%;text-align: left;justify-content: flex-start;display: flex;flex-flow: row;\" powered-by=\"xiumi.us\">\n<section style=\"display: inline-block;width: 100%;vertical-align: top;align-self: flex-start;flex: 0 0 auto;\">\n<section style=\"margin-right: 0%;margin-left: 0%;font-size: 11px;\" powered-by=\"xiumi.us\">\n<section style=\"display: inline-block;padding-right: 0.2em;padding-top: 0.5em;\">\n<section style=\"display: inline-block;vertical-align: top;width: 3em;height: 3em;border-width: 1px;border-style: solid;border-color: rgb(23, 23, 20);padding: 3px;border-radius: 100%;\">\n<section style=\"width: 100%;height: 100%;border-radius: 100%;background-color: rgb(23, 23, 20);text-align: center;color: rgb(255, 255, 255);font-size: 20px;line-height: 1.4;\">\n<p>5<\/p>\n<\/section>\n<\/section>\n<section style=\"display: inline-block;vertical-align: top;width: 6px;height: 6px;border-radius: 100%;margin-left: -0.5em;background-color: rgb(23, 23, 20);\"><svg viewbox=\"0 0 1 1\" style=\"float:left;line-height:0;width:0;vertical-align:top;\"><\/svg><\/section>\n<section style=\"display: inline-block;vertical-align: top;width: 3px;height: 3px;border-radius: 100%;margin-top: -0.22em;margin-left: 0.1em;background-color: rgb(23, 23, 20);\"><svg viewbox=\"0 0 1 1\" style=\"float:left;line-height:0;width:0;vertical-align:top;\"><\/svg><\/section>\n<\/section>\n<\/section>\n<section style=\"margin-right: 0%;margin-left: 0%;text-align: justify;justify-content: flex-start;display: flex;flex-flow: row;\" powered-by=\"xiumi.us\">\n<section style=\"display: inline-block;width: 100%;vertical-align: top;padding-left: 16px;border-width: 0px;align-self: flex-start;flex: 0 0 auto;\">\n<section style=\"justify-content: flex-start;display: flex;flex-flow: row;\" powered-by=\"xiumi.us\">\n<section style=\"display: inline-block;width: 100%;vertical-align: top;border-left: 2px dashed rgb(160, 160, 160);border-bottom-left-radius: 0px;padding-left: 10px;align-self: flex-start;flex: 0 0 auto;\">\n<section style=\"margin: -30px 0% 10px;justify-content: flex-start;display: flex;flex-flow: row;\" powered-by=\"xiumi.us\">\n<section style=\"display: inline-block;width: 100%;vertical-align: top;padding-left: 15px;align-self: flex-start;flex: 0 0 auto;\">\n<section style=\"margin-right: 0%;margin-left: 0%;text-align: center;\" powered-by=\"xiumi.us\">\n<section style=\"font-size: 18px;text-align: justify;\">\n<p><span style=\"font-size: 17px;\"><strong>\u53d1\u5e03R\u5305<\/strong><\/span><\/p>\n<\/section>\n<\/section>\n<\/section>\n<\/section>\n<section style=\"margin-right: 0%;margin-bottom: 20px;margin-left: 0%;\" powered-by=\"xiumi.us\">\n<p><span style=\"font-size: 14px;\">devtools::release(“my_new_package”) # \u53d1\u5e03my_new_package\u5305<\/span><\/p>\n<\/section>\n<\/section>\n<\/section>\n<\/section>\n<\/section>\n<\/section>\n<\/section>\n<section style=\"margin-right: 0%;margin-left: 0%;text-align: left;justify-content: flex-start;display: flex;flex-flow: row;\" powered-by=\"xiumi.us\">\n<section style=\"display: inline-block;width: 100%;vertical-align: top;align-self: flex-start;flex: 0 0 auto;\">\n<section style=\"margin-right: 0%;margin-left: 0%;font-size: 11px;\" powered-by=\"xiumi.us\">\n<section style=\"display: inline-block;padding-right: 0.2em;padding-top: 0.5em;\">\n<section style=\"display: inline-block;vertical-align: top;width: 3em;height: 3em;border-width: 1px;border-style: solid;border-color: rgb(23, 23, 20);padding: 3px;border-radius: 100%;\">\n<section style=\"width: 100%;height: 100%;border-radius: 100%;background-color: rgb(23, 23, 20);text-align: center;color: rgb(255, 255, 255);font-size: 20px;line-height: 1.4;\">\n<p>6<\/p>\n<\/section>\n<\/section>\n<section style=\"display: inline-block;vertical-align: top;width: 6px;height: 6px;border-radius: 100%;margin-left: -0.5em;background-color: rgb(23, 23, 20);\"><svg viewbox=\"0 0 1 1\" style=\"float:left;line-height:0;width:0;vertical-align:top;\"><\/svg><\/section>\n<section style=\"display: inline-block;vertical-align: top;width: 3px;height: 3px;border-radius: 100%;margin-top: -0.22em;margin-left: 0.1em;background-color: rgb(23, 23, 20);\"><svg viewbox=\"0 0 1 1\" style=\"float:left;line-height:0;width:0;vertical-align:top;\"><\/svg><\/section>\n<\/section>\n<\/section>\n<section style=\"margin-right: 0%;margin-left: 0%;text-align: justify;justify-content: flex-start;display: flex;flex-flow: row;\" powered-by=\"xiumi.us\">\n<section style=\"display: inline-block;width: 100%;vertical-align: top;padding-left: 16px;border-width: 0px;align-self: flex-start;flex: 0 0 auto;\">\n<section style=\"justify-content: flex-start;display: flex;flex-flow: row;\" powered-by=\"xiumi.us\">\n<section style=\"display: inline-block;width: 100%;vertical-align: top;border-left: 2px dashed rgb(160, 160, 160);border-bottom-left-radius: 0px;padding-left: 10px;align-self: flex-start;flex: 0 0 auto;\">\n<section style=\"margin: -30px 0% 10px;justify-content: flex-start;display: flex;flex-flow: row;\" powered-by=\"xiumi.us\">\n<section style=\"display: inline-block;width: 100%;vertical-align: top;padding-left: 15px;align-self: flex-start;flex: 0 0 auto;\">\n<section style=\"margin-right: 0%;margin-left: 0%;text-align: center;\" powered-by=\"xiumi.us\">\n<section style=\"font-size: 18px;text-align: justify;\">\n<p><span style=\"font-size: 17px;\"><strong>\u5b89\u88c5R\u5305<\/strong><\/span><\/p>\n<\/section>\n<\/section>\n<\/section>\n<\/section>\n<section style=\"margin-right: 0%;margin-bottom: 20px;margin-left: 0%;\" powered-by=\"xiumi.us\">\n<p><span style=\"font-size: 14px;\">install_github(“xiaoguo\/my_new_package”) # \u4f7f\u7528install_github()\u51fd\u6570\u5b89\u88c5R\u5305<\/span><\/p>\n<\/section>\n<\/section>\n<\/section>\n<\/section>\n<\/section>\n<\/section>\n<\/section>\n<section style=\"margin-right: 0%;margin-left: 0%;text-align: left;justify-content: flex-start;display: flex;flex-flow: row;\" powered-by=\"xiumi.us\">\n<section style=\"display: inline-block;width: 100%;vertical-align: top;align-self: flex-start;flex: 0 0 auto;\">\n<section style=\"margin-right: 0%;margin-left: 0%;font-size: 11px;\" powered-by=\"xiumi.us\">\n<section style=\"display: inline-block;padding-right: 0.2em;padding-top: 0.5em;\">\n<section style=\"display: inline-block;vertical-align: top;width: 3em;height: 3em;border-width: 1px;border-style: solid;border-color: rgb(23, 23, 20);padding: 3px;border-radius: 100%;\">\n<section style=\"width: 100%;height: 100%;border-radius: 100%;background-color: rgb(23, 23, 20);text-align: center;color: rgb(255, 255, 255);font-size: 20px;line-height: 1.4;\">\n<p>7<\/p>\n<\/section>\n<\/section>\n<section style=\"display: inline-block;vertical-align: top;width: 6px;height: 6px;border-radius: 100%;margin-left: -0.5em;background-color: rgb(23, 23, 20);\"><svg viewbox=\"0 0 1 1\" style=\"float:left;line-height:0;width:0;vertical-align:top;\"><\/svg><\/section>\n<section style=\"display: inline-block;vertical-align: top;width: 3px;height: 3px;border-radius: 100%;margin-top: -0.22em;margin-left: 0.1em;background-color: rgb(23, 23, 20);\"><svg viewbox=\"0 0 1 1\" style=\"float:left;line-height:0;width:0;vertical-align:top;\"><\/svg><\/section>\n<\/section>\n<\/section>\n<section style=\"margin-right: 0%;margin-left: 0%;text-align: justify;justify-content: flex-start;display: flex;flex-flow: row;\" powered-by=\"xiumi.us\">\n<section style=\"display: inline-block;width: 100%;vertical-align: top;padding-left: 16px;border-width: 0px;align-self: flex-start;flex: 0 0 auto;\">\n<section style=\"justify-content: flex-start;display: flex;flex-flow: row;\" powered-by=\"xiumi.us\">\n<section style=\"display: inline-block;width: 100%;vertical-align: top;border-left: 2px dashed rgb(160, 160, 160);border-bottom-left-radius: 0px;padding-left: 10px;align-self: flex-start;flex: 0 0 auto;\">\n<section style=\"margin: -30px 0% 10px;justify-content: flex-start;display: flex;flex-flow: row;\" powered-by=\"xiumi.us\">\n<section style=\"display: inline-block;width: 100%;vertical-align: top;padding-left: 15px;align-self: flex-start;flex: 0 0 auto;\">\n<section style=\"margin-right: 0%;margin-left: 0%;text-align: center;\" powered-by=\"xiumi.us\">\n<section style=\"font-size: 18px;text-align: justify;\">\n<p><span style=\"font-size: 17px;\"><strong>\u52a0\u8f7d\u548c\u91cd\u65b0\u52a0\u8f7dR\u5305<\/strong><\/span><\/p>\n<\/section>\n<\/section>\n<\/section>\n<\/section>\n<section style=\"margin-right: 0%;margin-bottom: 20px;margin-left: 0%;\" powered-by=\"xiumi.us\">\n<p><span style=\"font-size: 14px;\">devtools::load_all(“my_new_package”) # \u52a0\u8f7d\u6216\u91cd\u65b0\u52a0\u8f7dmy_new_package\u5305<\/span><\/p>\n<\/section>\n<\/section>\n<\/section>\n<\/section>\n<\/section>\n<\/section>\n<\/section>\n<section powered-by=\"xiumi.us\">\n<section>\n<section powered-by=\"xiumi.us\">\n<section data-mpa-template=\"t\" mpa-from-tpl=\"t\">\n<section data-mpa-template=\"t\" mpa-from-tpl=\"t\">\n<section style=\"text-align: justify;font-size: 16px;\" mpa-from-tpl=\"t\">\n<section style=\"text-align: left;justify-content: flex-start;display: flex;flex-flow: row;margin-top: 10px;margin-bottom: 10px;\" powered-by=\"xiumi.us\" mpa-from-tpl=\"t\">\n<section style=\"display: inline-block;vertical-align: bottom;width: auto;align-self: flex-end;flex: 0 0 auto;border-style: solid;border-width: 0px 0px 7px;border-bottom-color: rgb(175, 225, 255);min-width: 5%;height: auto;\" mpa-from-tpl=\"t\">\n<section style=\"text-align: justify;font-size: 20px;\" powered-by=\"xiumi.us\" mpa-from-tpl=\"t\">\n<p><strong mpa-from-tpl=\"t\" mpa-is-content=\"t\">\u5c0f\u679c\u771f\u5fc3\u8bdd<\/strong><\/p>\n<\/section>\n<\/section>\n<section style=\"display: inline-block;vertical-align: bottom;width: auto;min-width: 5%;flex: 0 0 auto;height: auto;align-self: flex-end;\" mpa-from-tpl=\"t\">\n<section style=\"transform: perspective(0px);transform-style: flat;\" powered-by=\"xiumi.us\" mpa-from-tpl=\"t\">\n<section style=\"transform: translate3d(5px, 0px, 0px) rotateX(180deg);\" mpa-from-tpl=\"t\">\n<section style=\"display: inline-block;width: 6px;height: 6px;vertical-align: top;overflow: hidden;border-radius: 460px;background-color: rgb(244, 171, 189);\" mpa-from-tpl=\"t\">\n<section style=\"text-align: justify;\" powered-by=\"xiumi.us\" mpa-from-tpl=\"t\">\n<p><br mpa-from-tpl=\"t\" \/><\/p>\n<\/section>\n<\/section>\n<\/section>\n<\/section>\n<\/section>\n<\/section>\n<\/section>\n<\/section>\n<\/section>\n<p style=\"letter-spacing: 0.034em;font-size: 15px;\"><span style=\"letter-spacing: 0.034em;font-size: 14px;\">\u5b9e\u4e0d\u76f8\u7792\uff0c\u5c0f\u679c\u4f7f\u7528devtools\u6700\u591a\u7684\u60c5\u51b5\u5c31\u662f\u4e0b\u8f7dR\u5305\uff0c\u6709\u4e9bR\u5305\u53ea\u80fd\u4ecegithub\u4e0a\u4e0b\u8f7d\uff0c\u6709\u5982\u4e0b\u51e0\u4e2a\u539f\u56e0\uff1a<br \/><\/span><\/p>\n<\/section>\n<\/section>\n<\/section>\n<section powered-by=\"xiumi.us\" style=\"letter-spacing: 0.034em;font-size: 15px;\">\n<p style=\"letter-spacing: 0.034em;font-size: 15px;\"><span style=\"letter-spacing: 0.034em;font-size: 14px;\">1.R\u5305\u7684\u5f00\u53d1\u8005\u6ca1\u6709\u5c06\u5176\u63d0\u4ea4\u5230CRAN\u6216\u5176\u4ed6\u5b98\u65b9\u7684\u6e90\uff0c\u800c\u662f\u9009\u62e9\u5728github\u4e0a\u8fdb\u884c\u5f00\u53d1\u548c\u7ef4\u62a4\u3002\u8fd9\u6837\u53ef\u4ee5\u65b9\u4fbf\u5730\u4f7f\u7528git\u8fdb\u884c\u7248\u672c\u63a7\u5236\u548c\u534f\u4f5c\uff0c\u4e5f\u53ef\u4ee5\u8ba9\u7528\u6237\u66f4\u5feb\u5730\u83b7\u53d6\u6700\u65b0\u7684\u66f4\u65b0\u548c\u4fee\u590d\u3002<\/span><\/p>\n<p style=\"letter-spacing: 0.034em;font-size: 15px;\"><span style=\"letter-spacing: 0.034em;font-size: 14px;\">2.R\u5305\u7684\u5f00\u53d1\u8005\u5df2\u7ecf\u5c06\u5176\u63d0\u4ea4\u5230CRAN\u6216\u5176\u4ed6\u5b98\u65b9\u7684\u6e90\uff0c\u4f46\u7531\u4e8e\u67d0\u4e9b\u539f\u56e0\uff0c\u8be5\u6e90\u6ca1\u6709\u53ca\u65f6\u66f4\u65b0\u6216\u540c\u6b65\u8be5R\u5305\u7684\u6700\u65b0\u7248\u672c\u3002\u8fd9\u6837\u5c31\u5bfc\u81f4\u7528\u6237\u5728\u8be5\u6e90\u4e0a\u65e0\u6cd5\u627e\u5230\u6216\u5b89\u88c5\u8be5R\u5305\uff0c\u800c\u53ea\u80fd\u4ecegithub\u4e0a\u4e0b\u8f7d\u3002<\/span><\/p>\n<p style=\"letter-spacing: 0.034em;font-size: 15px;\"><span style=\"letter-spacing: 0.034em;font-size: 14px;\">3.R\u5305\u7684\u5f00\u53d1\u8005\u5df2\u7ecf\u505c\u6b62\u4e86\u5bf9\u8be5R\u5305\u7684\u5f00\u53d1\u548c\u7ef4\u62a4\uff0c\u800c\u53ea\u5728github\u4e0a\u4fdd\u7559\u4e86\u8be5R\u5305\u7684\u5386\u53f2\u7248\u672c\u3002\u8fd9\u6837\u5c31\u4f7f\u5f97\u7528\u6237\u65e0\u6cd5\u5728\u5176\u4ed6\u6e90\u4e0a\u627e\u5230\u6216\u5b89\u88c5\u8be5R\u5305\uff0c\u800c\u53ea\u80fd\u4ecegithub\u4e0a\u4e0b\u8f7d\u3002<\/span><\/p>\n<p style=\"letter-spacing: 0.034em;font-size: 15px;\"><span style=\"letter-spacing: 0.034em;font-size: 14px;\">\u8fd9\u8ba9\u8bb8\u591a\u751f\u4fe1\u5c0f\u767d\u6293\u8033\u6320\u816e\uff0c\u65e0\u6cd5\u901a\u8fc7\u5e38\u89c4\u65b9\u6cd5\u4e0b\u8f7d\u3002<\/span><\/p>\n<p><br \/><\/p>\n<\/section>\n<section powered-by=\"xiumi.us\">\n<section>\n<section powered-by=\"xiumi.us\">\n<section data-mpa-template=\"t\" mpa-from-tpl=\"t\">\n<section data-mpa-template=\"t\" mpa-from-tpl=\"t\">\n<section style=\"text-align: justify;font-size: 16px;\" mpa-from-tpl=\"t\">\n<section style=\"text-align: left;justify-content: flex-start;display: flex;flex-flow: row;margin-top: 10px;margin-bottom: 10px;\" powered-by=\"xiumi.us\" mpa-from-tpl=\"t\">\n<section style=\"display: inline-block;vertical-align: bottom;width: auto;align-self: flex-end;flex: 0 0 auto;border-style: solid;border-width: 0px 0px 7px;border-bottom-color: rgb(175, 225, 255);min-width: 5%;height: auto;\" mpa-from-tpl=\"t\">\n<section style=\"text-align: justify;font-size: 20px;\" powered-by=\"xiumi.us\" mpa-from-tpl=\"t\">\n<p><strong mpa-from-tpl=\"t\" mpa-is-content=\"t\">\u793a\u4f8b\u6559\u5b66<\/strong><\/p>\n<\/section>\n<\/section>\n<section style=\"display: inline-block;vertical-align: bottom;width: auto;min-width: 5%;flex: 0 0 auto;height: auto;align-self: flex-end;\" mpa-from-tpl=\"t\">\n<section style=\"transform: perspective(0px);transform-style: flat;\" powered-by=\"xiumi.us\" mpa-from-tpl=\"t\">\n<section style=\"transform: translate3d(5px, 0px, 0px) rotateX(180deg);\" mpa-from-tpl=\"t\">\n<section style=\"display: inline-block;width: 6px;height: 6px;vertical-align: top;overflow: hidden;border-radius: 460px;background-color: rgb(244, 171, 189);\" mpa-from-tpl=\"t\">\n<section style=\"text-align: justify;\" powered-by=\"xiumi.us\" mpa-from-tpl=\"t\">\n<p><br mpa-from-tpl=\"t\" \/><\/p>\n<\/section>\n<\/section>\n<\/section>\n<\/section>\n<\/section>\n<\/section>\n<\/section>\n<\/section>\n<\/section>\n<p><span style=\"letter-spacing: 0.034em;font-size: 14px;\">\u4e0b\u9762\u5c0f\u679c\u5c31\u4ee5DESeq2\u5305\u7684\u4e0b\u8f7d\u4e3a\u4f8b\uff0c\u5e26\u5927\u5bb6\u611f\u53d7devtools\u4e0b\u8f7dR \u5305\u7684\u5feb\u4e50\u3002\u6211\u4eec\u5148\u4f7f\u7528install.packages(\u2018DESeq2\u2019)\u51fd\u6570\u4e0b\u8f7d\uff0c\u4f1a\u51fa\u73b0\u62a5\u9519\u3002<\/span><br \/><\/p>\n<\/section>\n<\/section>\n<\/section>\n<section style=\"line-height: 0;\" powered-by=\"xiumi.us\">\n<section style=\"vertical-align: middle;display: inline-block;line-height: 0;\"><img decoding=\"async\" class=\"rich_pages wxw-img\" data-ratio=\"0.21299638989169675\" data-s=\"300,640\" src=\"https:\/\/i0.wp.com\/www.biocloudservice.com\/wordpress\/wp-content\/uploads\/2024\/06\/2_WATrp86KH6ZIyEuAMZQxZibYKo3RbA.png?w=640\" onerror=\"this.src='https:\/\/mmbiz.qpic.cn\/sz_mmbiz_png\/zcicibWZessAzhoNjktYmc4lN1vzqfM4E3iaFGBys7WJJA5mKatTDHia1LX6QWATrp86KH6ZIyEuAMZQxZibYKo3RbA\/640?wx_fmt=png'\" data-type=\"png\" data-w=\"554\" style=\"vertical-align: middle;width: 100%;\" data-recalc-dims=\"1\" \/><\/section>\n<\/section>\n<section powered-by=\"xiumi.us\">\n<p><br \/><\/p>\n<p style=\"letter-spacing: 0.034em;font-size: 15px;\"><span style=\"letter-spacing: 0.034em;font-size: 14px;\">\u4e0b\u9762\u4f7f\u7528devtools\u4ecegithub\u5b89\u88c5\uff1a<\/span><\/p>\n<\/section>\n<section class=\"code-snippet__fix code-snippet__js\">\n<ul class=\"code-snippet__line-index code-snippet__js\">\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<\/ul>\n<pre class=\"code-snippet__js\" data-lang=\"c\"><code><span class=\"code-snippet_outer\">install_github(<\/span><\/code><code><span class=\"code-snippet_outer\"><br \/><\/span><\/code><code><span class=\"code-snippet_outer\">  repo,<\/span><\/code><code><span class=\"code-snippet_outer\"><br \/><\/span><\/code><code><span class=\"code-snippet_outer\">  ref = \"HEAD\",<\/span><\/code><code><span class=\"code-snippet_outer\"><br \/><\/span><\/code><code><span class=\"code-snippet_outer\">  subdir = NULL,<\/span><\/code><code><span class=\"code-snippet_outer\"><br \/><\/span><\/code><code><span class=\"code-snippet_outer\">  auth_token = github_pat(quiet),<\/span><\/code><code><span class=\"code-snippet_outer\"><br \/><\/span><\/code><code><span class=\"code-snippet_outer\">  host = \"api.github.com\",<\/span><\/code><code><span class=\"code-snippet_outer\"><br \/><\/span><\/code><code><span class=\"code-snippet_outer\">  dependencies = NA,<\/span><\/code><code><span class=\"code-snippet_outer\"><br \/><\/span><\/code><code><span class=\"code-snippet_outer\">  upgrade = c(\"default\", \"ask\", \"always\", \"never\"),<\/span><\/code><code><span class=\"code-snippet_outer\"><br \/><\/span><\/code><code><span class=\"code-snippet_outer\">  force = FALSE,<\/span><\/code><code><span class=\"code-snippet_outer\"><br \/><\/span><\/code><code><span class=\"code-snippet_outer\">  quiet = FALSE,<\/span><\/code><code><span class=\"code-snippet_outer\"><br \/><\/span><\/code><code><span class=\"code-snippet_outer\">  build = TRUE,<\/span><\/code><code><span class=\"code-snippet_outer\"><br \/><\/span><\/code><code><span class=\"code-snippet_outer\">  build_opts = c(\"--no-resave-data\", \"--no-manual\", \"--no-build-vignettes\"),<\/span><\/code><code><span class=\"code-snippet_outer\"><br \/><\/span><\/code><code><span class=\"code-snippet_outer\">  build_manual = FALSE,<\/span><\/code><code><span class=\"code-snippet_outer\"><br \/><\/span><\/code><code><span class=\"code-snippet_outer\">  build_vignettes = FALSE,<\/span><\/code><code><span class=\"code-snippet_outer\"><br \/><\/span><\/code><code><span class=\"code-snippet_outer\">  repos = getOption(\"repos\"),<\/span><\/code><code><span class=\"code-snippet_outer\"><br \/><\/span><\/code><code><span class=\"code-snippet_outer\">  type = getOption(\"pkgType\"),<\/span><\/code><code><span class=\"code-snippet_outer\"><br \/><\/span><\/code><code><span class=\"code-snippet_outer\">  ...)<\/span><\/code><\/pre>\n<\/section>\n<section powered-by=\"xiumi.us\">\n<section data-mpa-template=\"t\" mpa-from-tpl=\"t\">\n<section data-mpa-template=\"t\" mpa-from-tpl=\"t\">\n<section style=\"text-align: justify;font-size: 16px;\" mpa-from-tpl=\"t\">\n<section style=\"text-align: left;justify-content: flex-start;display: flex;flex-flow: row;margin-top: 10px;margin-bottom: 10px;\" powered-by=\"xiumi.us\" mpa-from-tpl=\"t\">\n<section style=\"display: inline-block;vertical-align: bottom;width: auto;align-self: flex-end;flex: 0 0 auto;border-style: solid;border-width: 0px 0px 7px;border-bottom-color: rgb(175, 225, 255);min-width: 5%;height: auto;\" mpa-from-tpl=\"t\">\n<section style=\"text-align: justify;font-size: 20px;\" powered-by=\"xiumi.us\" mpa-from-tpl=\"t\">\n<p><strong mpa-from-tpl=\"t\" mpa-is-content=\"t\">\u53c2\u6570\u89e3\u91ca<\/strong><\/p>\n<\/section>\n<\/section>\n<section style=\"display: inline-block;vertical-align: bottom;width: auto;min-width: 5%;flex: 0 0 auto;height: auto;align-self: flex-end;\" mpa-from-tpl=\"t\">\n<section style=\"transform: perspective(0px);transform-style: flat;\" powered-by=\"xiumi.us\" mpa-from-tpl=\"t\">\n<section style=\"transform: translate3d(5px, 0px, 0px) rotateX(180deg);\" mpa-from-tpl=\"t\">\n<section style=\"display: inline-block;width: 6px;height: 6px;vertical-align: top;overflow: hidden;border-radius: 460px;background-color: rgb(244, 171, 189);\" mpa-from-tpl=\"t\">\n<section style=\"text-align: justify;\" powered-by=\"xiumi.us\" mpa-from-tpl=\"t\">\n<p><strong style=\"font-size: var(--articleFontsize);letter-spacing: 0.034em;\"><\/strong><\/p>\n<\/section>\n<\/section>\n<\/section>\n<\/section>\n<\/section>\n<\/section>\n<\/section>\n<\/section>\n<\/section>\n<p><span style=\"font-size: 14px;\">repo: \u8981\u5b89\u88c5\u7684Github\u4ed3\u5e93\u7684\u540d\u79f0\uff0c\u5fc5\u987b\u4e3a\u5b57\u7b26\u5411\u91cf\u7c7b\u578b\u3002<\/span><\/p>\n<p><span style=\"font-size: 14px;\">ref: \u6307\u5b9a\u4eceGithub\u4e2d\u5b89\u88c5\u54ea\u4e2a\u5206\u652f\u6216\u6807\u7b7e\uff0c\u9ed8\u8ba4\u4e3a\u6700\u65b0\u7248\u672c\u3002<\/span><\/p>\n<p><span style=\"font-size: 14px;\">subdir: \u4ed3\u5e93\u4e2d\u7684\u5b50\u76ee\u5f55\u540d\u79f0\uff08\u53ef\u9009\uff09\u3002<\/span><\/p>\n<p><span style=\"font-size: 14px;\">host: \u4f7f\u7528Github\u955c\u50cf\uff0c\u9ed8\u8ba4\u4e3agithub.com\u3002<\/span><\/p>\n<p><span style=\"font-size: 14px;\">dependencies: \u6307\u5b9a\u8981\u5b89\u88c5\u7684\u4f9d\u8d56\u5173\u7cfb\uff0c\u53ef\u9009\u9879\u5305\u62ecNA\uff08\u9ed8\u8ba4\uff0c\u81ea\u52a8\u5b89\u88c5\u6240\u6709\u5fc5\u9700\u7684\u4f9d\u8d56\u9879\uff09\u3001”Depends”\uff08\u4ec5\u5b89\u88c5\u5fc5\u9700\u7684\u4f9d\u8d56\u9879\uff09\u548c”Imports”\uff08\u5b89\u88c5\u5fc5\u9700\u548c\u5bfc\u5165\u7684\u4f9d\u8d56\u9879\uff09\u3002<\/span><\/p>\n<p><span style=\"font-size: 14px;\">upgrade: \u6307\u5b9a\u662f\u5426\u66f4\u65b0\u5df2\u5b89\u88c5\u7684\u8f6f\u4ef6\u5305\u3002\u53ef\u9009\u9879\u5305\u62ec\uff1a”default”\uff08\u9ed8\u8ba4\uff0c\u53ea\u5728\u5fc5\u8981\u65f6\u66f4\u65b0\uff09\u3001”ask”\uff08\u8be2\u95ee\u7528\u6237\u662f\u5426\u8981\u66f4\u65b0\uff09\u3001”always”\uff08\u603b\u662f\u66f4\u65b0\uff09\u548c”never”\uff08\u6c38\u4e0d\u66f4\u65b0\uff09\u3002\u4e5f\u53ef\u4ee5\u4f7f\u7528\u5b57\u7b26\u4e32”bioc”\uff0c\u5728\u5b89\u88c5bioconductor\u5305\u65f6\uff0c\u4f1a\u5f3a\u5236\u66f4\u65b0\u3002<\/span><\/p>\n<p><span style=\"font-size: 14px;\">force_deps: \u6307\u5b9a\u662f\u5426\u5f3a\u5236\u91cd\u65b0\u5b89\u88c5\u4f9d\u8d56\u9879\u3002\u9ed8\u8ba4\u4e3aFALSE\u3002<\/span><\/p>\n<p><span style=\"font-size: 14px;\">build_vignettes: \u662f\u5426\u5728\u5b89\u88c5\u65f6\u6784\u5efavignettes\u3002\u5982\u679c\u4e0d\u6307\u5b9a\uff0c\u5219\u6839\u636e\u5168\u5c40\u9009\u9879\u6784\u5efa\u3002<\/span><\/p>\n<p><span style=\"font-size: 14px;\">build_opts: \u4e00\u4e2a\u5b57\u7b26\u5411\u91cf\uff0c\u6307\u5b9a\u5728\u6784\u5efa\u8f6f\u4ef6\u5305\u65f6\u8981\u4f20\u9012\u7ed9R CMD build\u7684\u9009\u9879\u3002<\/span><\/p>\n<p><span style=\"font-size: 14px;\">build: \u662f\u5426\u5728\u5b89\u88c5\u65f6\u6784\u5efa\u6e90\u4ee3\u7801\u5305\u3002\u9ed8\u8ba4\u4e3aTRUE\u3002<\/span><\/p>\n<p><span style=\"font-size: 14px;\">build_manual: \u662f\u5426\u6784\u5efaPDF\u624b\u518c\uff08\u5982\u679c\u5b58\u5728\uff09\u3002<\/span><\/p>\n<p><span style=\"font-size: 14px;\">quiet: \u662f\u5426\u9759\u9ed8\u5b89\u88c5\u3002<\/span><\/p>\n<p><span style=\"font-size: 14px;\">build_args: \u4f20\u9012\u7ed9R CMD build\u548cR CMD install\u7684\u5176\u4ed6\u6784\u5efa\u53c2\u6570\u3002<\/span><\/p>\n<p><span style=\"font-size: 14px;\">repos: \u8981\u4f7f\u7528\u7684\u4ed3\u5e93\u7c7b\u578b\u548c\u5730\u5740\u3002<\/span><\/p>\n<p><span style=\"font-size: 14px;\">type: \u5b89\u88c5\u7684\u8f6f\u4ef6\u5305\u7c7b\u578b\uff0c\u901a\u5e38\u81ea\u52a8\u68c0\u6d4b\u3002<\/span><\/p>\n<p><span style=\"font-size: 14px;\">…: \u5176\u4ed6\u53c2\u6570\uff0c\u5305\u62ec\u5b89\u88c5\u65f6\u7684\u989d\u5916\u547d\u4ee4\u884c\u9009\u9879\u3002<\/span><\/p>\n<\/section>\n<section powered-by=\"xiumi.us\">\n<p><br \/><\/p>\n<p><span style=\"font-size: 14px;\">\u4ecegithub\u5b89\u88c5DESeq2\u5305\u7684\u4ee3\u7801\u793a\u4f8b\uff1a<\/span><\/p>\n<\/section>\n<section class=\"code-snippet__fix code-snippet__js\">\n<ul class=\"code-snippet__line-index code-snippet__js\">\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<\/ul>\n<pre class=\"code-snippet__js\" data-lang=\"c\"><code><span class=\"code-snippet_outer\">install.packages(\"devtools\")<\/span><\/code><code><span class=\"code-snippet_outer\"><br \/><\/span><\/code><code><span class=\"code-snippet_outer\">library(devtools)<\/span><\/code><code><span class=\"code-snippet_outer\"><br \/><\/span><\/code><code><span class=\"code-snippet_outer\">install_github(\"mikelove\/DESeq2\")<\/span><\/code><\/pre>\n<\/section>\n<section powered-by=\"xiumi.us\">\n<p><span style=\"font-size: 14px;\">#devtools\u4f1a\u81ea\u52a8\u4ece<\/span><\/p>\n<p><span style=\"font-size: 14px;\">https:\/\/github.com\/mikelove\/DESeq2\u8fd9\u4e2a\u4ed3\u5e93\uff08\u5982\u56fe\uff09\u4e0b\u8f7d\u6700\u65b0\u7684DESeq2\u5305\u53ca\u5176\u6240\u6709\u9700\u8981\u7684\u4f9d\u8d56\u5305,\u4e00\u952e\u5b8c\u6210\u5b89\u88c5<\/span><\/p>\n<\/section>\n<section style=\"display: inline-block;width: 100%;vertical-align: top;overflow-x: auto;\" powered-by=\"xiumi.us\">\n<section style=\"overflow-y: hidden;\"><svg viewbox=\"0 0 1 1\" style=\"float:left;line-height:0;width:0;vertical-align:top;\"><\/svg><\/section>\n<\/section>\n<section style=\"text-align: right;margin: -14px 0% 20px;\" powered-by=\"xiumi.us\">\n<section style=\"display: inline-block;width: 100%;height: 4px;vertical-align: top;overflow: hidden;border-width: 0px;border-radius: 10px;border-style: none;border-color: rgb(62, 62, 62);background-color: rgb(224, 229, 236);box-shadow: rgba(163, 177, 198, 0.5) 0px 0px 4px inset;\"><svg viewbox=\"0 0 1 1\" style=\"float:left;line-height:0;width:0;vertical-align:top;\"><\/svg><\/section>\n<\/section>\n<section style=\"line-height: 0;\" powered-by=\"xiumi.us\">\n<section style=\"vertical-align: middle;display: inline-block;line-height: 0;\"><br \/><\/section>\n<section style=\"vertical-align: middle;display: inline-block;line-height: 0;\"><br \/><\/section>\n<section style=\"vertical-align: middle;display: inline-block;line-height: 0;\"><img decoding=\"async\" class=\"rich_pages wxw-img\" data-ratio=\"0.3682008368200837\" data-s=\"300,640\" src=\"https:\/\/i0.wp.com\/www.biocloudservice.com\/wordpress\/wp-content\/uploads\/2024\/06\/3_JonKERKoG57gundjGnUV4al4VPKbDQ.png?w=640\" onerror=\"this.src='https:\/\/mmbiz.qpic.cn\/sz_mmbiz_png\/zcicibWZessAzhoNjktYmc4lN1vzqfM4E3zE27arNjeSJb9ia999O3MANuKJonKERKoG57gundjGnUV4al4VPKbDQ\/640?wx_fmt=png'\" data-type=\"png\" data-w=\"478\" style=\"vertical-align: middle;width: 100%;\" data-recalc-dims=\"1\" \/><\/section>\n<\/section>\n<section powered-by=\"xiumi.us\">\n<p><span style=\"font-size: 14px;\">\u5b89\u88c5\u6210\u529f<\/span><br \/><\/p>\n<\/section>\n<section style=\"line-height: 0;\" powered-by=\"xiumi.us\">\n<section style=\"vertical-align: middle;display: inline-block;line-height: 0;\"><img decoding=\"async\" class=\"rich_pages wxw-img\" data-ratio=\"0.17768595041322313\" data-s=\"300,640\" src=\"https:\/\/i0.wp.com\/www.biocloudservice.com\/wordpress\/wp-content\/uploads\/2024\/06\/4_nzRAsHzvFeQXGd5tTQeianI2lntsMQ.png?w=640\" onerror=\"this.src='https:\/\/mmbiz.qpic.cn\/sz_mmbiz_png\/zcicibWZessAzhoNjktYmc4lN1vzqfM4E3cczCwqhTia9ciap4VFyBQZBn7nonzRAsHzvFeQXGd5tTQeianI2lntsMQ\/640?wx_fmt=png'\" data-type=\"png\" data-w=\"484\" style=\"vertical-align: middle;width: 100%;\" data-recalc-dims=\"1\" \/><\/section>\n<\/section>\n<section powered-by=\"xiumi.us\">\n<p><span style=\"font-size: 14px;\">\u7b2c\u4e00\u6b21\u8f7d\u5165\u4f1a\u52a0\u8f7d\u8bb8\u591a\u4f9d\u8d56\u5305\uff0c\u8981\u6d88\u8017\u4e00\u70b9\u65f6\u95f4\u3002<\/span><\/p>\n<section class=\"code-snippet__fix code-snippet__js\">\n<ul class=\"code-snippet__line-index code-snippet__js\">\n<li><\/li>\n<\/ul>\n<pre class=\"code-snippet__js\"><code><span class=\"code-snippet_outer\">library(DESeq2)<\/span><\/code><\/pre>\n<\/section>\n<\/section>\n<section style=\"line-height: 0;\" powered-by=\"xiumi.us\">\n<section style=\"vertical-align: middle;display: inline-block;line-height: 0;\"><img decoding=\"async\" class=\"rich_pages wxw-img\" data-ratio=\"0.5917030567685589\" data-s=\"300,640\" src=\"https:\/\/i0.wp.com\/www.biocloudservice.com\/wordpress\/wp-content\/uploads\/2024\/06\/5_BpRhL6EicX0Q2y4k04SfUD3ghbGnEw.png?w=640\" onerror=\"this.src='https:\/\/mmbiz.qpic.cn\/sz_mmbiz_png\/zcicibWZessAzhoNjktYmc4lN1vzqfM4E3lWRXyvmaOcvAG1J6PoQ5GQ1gYBpRhL6EicX0Q2y4k04SfUD3ghbGnEw\/640?wx_fmt=png'\" data-type=\"png\" data-w=\"458\" style=\"vertical-align: middle;width: 100%;\" data-recalc-dims=\"1\" \/><\/section>\n<\/section>\n<section powered-by=\"xiumi.us\">\n<section>\n<section powered-by=\"xiumi.us\">\n<section data-mpa-template=\"t\" mpa-from-tpl=\"t\">\n<section data-mpa-template=\"t\" mpa-from-tpl=\"t\">\n<section style=\"text-align: justify;font-size: 16px;\" mpa-from-tpl=\"t\">\n<section style=\"text-align: left;justify-content: flex-start;display: flex;flex-flow: row;margin-top: 10px;margin-bottom: 10px;\" powered-by=\"xiumi.us\" mpa-from-tpl=\"t\">\n<section style=\"display: inline-block;vertical-align: bottom;width: auto;align-self: flex-end;flex: 0 0 auto;border-style: solid;border-width: 0px 0px 7px;border-bottom-color: rgb(175, 225, 255);min-width: 5%;height: auto;\" mpa-from-tpl=\"t\">\n<section style=\"text-align: justify;font-size: 20px;\" powered-by=\"xiumi.us\" mpa-from-tpl=\"t\">\n<p><strong mpa-from-tpl=\"t\" mpa-is-content=\"t\">\u603b\u7ed3<\/strong><\/p>\n<\/section>\n<\/section>\n<section style=\"display: inline-block;vertical-align: bottom;width: auto;min-width: 5%;flex: 0 0 auto;height: auto;align-self: flex-end;\" mpa-from-tpl=\"t\">\n<section style=\"transform: perspective(0px);transform-style: flat;\" powered-by=\"xiumi.us\" mpa-from-tpl=\"t\">\n<section style=\"transform: translate3d(5px, 0px, 0px) rotateX(180deg);\" mpa-from-tpl=\"t\">\n<section style=\"display: inline-block;width: 6px;height: 6px;vertical-align: top;overflow: hidden;border-radius: 460px;background-color: rgb(244, 171, 189);\" mpa-from-tpl=\"t\">\n<section style=\"text-align: justify;\" powered-by=\"xiumi.us\" mpa-from-tpl=\"t\">\n<p><br mpa-from-tpl=\"t\" \/><\/p>\n<\/section>\n<\/section>\n<\/section>\n<\/section>\n<\/section>\n<\/section>\n<\/section>\n<\/section>\n<\/section>\n<p><span style=\"font-size: 14px;letter-spacing: 0.034em;\">\u603b\u4e4b,\u5728\u8fdb\u884c\u751f\u7269\u4fe1\u606f\u5b66\u7814\u7a76\u65f6,\u4f7f\u7528devtools\u76f4\u63a5\u4eceGitHub\u4e00\u952e\u5b89\u88c5\u4f9d\u8d56\u5b8c\u6574\u7684R\u5305\u53ca\u5176\u6700\u65b0\u7248\u672c,\u53ef\u4ee5\u5927\u5927\u7b80\u5316\u5b89\u88c5\u6b65\u9aa4,\u63d0\u9ad8\u5de5\u4f5c\u6548\u7387\u3002\u5b83\u582a\u79f0\u751f\u7269\u4fe1\u606f\u5b66\u5bb6\u5fc5\u4e0d\u53ef\u5c11\u7684\u4e00\u4e2a\u5229\u5668\u3002 <br \/><\/span><\/p>\n<\/section>\n<\/section>\n<\/section>\n<section powered-by=\"xiumi.us\">\n<p><br \/><\/p>\n<p><span style=\"font-size: 14px;\">\u4ee5\u4e0a\u5c31\u662f\u5bf9devtools\u5305\u7684\u57fa\u672c\u4ecb\u7ecd\u548c\u4f7f\u7528\u65b9\u6cd5\u3002\u638c\u63e1\u4e86\u8fd9\u4e9b\u65b9\u6cd5\uff0c\u4f60\u5c31\u53ef\u4ee5\u66f4\u65b9\u4fbf\u5730\u521b\u5efa\u3001\u6d4b\u8bd5\u3001\u53d1\u5e03\u3001\u4e0b\u8f7d\u548c\u7ba1\u7406\u4f60\u7684R\u5305\u4e86\u3002\u4f60\u53ef\u4ee5\u6839\u636e\u81ea\u5df1\u7684\u9700\u6c42\u548c\u60c5\u51b5\uff0c\u5bf9\u8fd9\u4e9b\u4ee3\u7801\u8fdb\u884c\u4fee\u6539\u548c\u6269\u5c55\uff01<\/span><\/p>\n<p><br \/><\/p>\n<p><span style=\"font-size: 14px;\"><strong>\u600e\u4e48\u6837\uff0c\u4f60\u5b66\u4f1a\u4e86\u5417\uff1f\u5c0f\u679c\u4eca\u5929\u7684\u5206\u4eab\u5c31\u5230\u8fd9\u91cc\uff0c\u6b22\u8fce\u5927\u5bb6\u548c\u5c0f\u679c\u4e00\u8d77\u8ba8\u8bba\u5b66\u4e60\u54e6\uff01\u6211\u4eec\u4e0b\u671f\u518d\u89c1~<\/strong><\/span><\/p>\n<section powered-by=\"xiumi.us\" style=\"margin-bottom: 0px;letter-spacing: 0.578px;white-space: normal;text-align: left;\">\n<section style=\"font-size: 16px;\">\n<section powered-by=\"xiumi.us\" style=\"margin: 10px;justify-content: flex-start;display: flex;flex-flow: row;\">\n<section style=\"padding-right: 10px;padding-left: 10px;display: inline-block;width: 558px;vertical-align: top;border-style: dashed;border-width: 1px;border-color: rgb(62, 62, 62);align-self: flex-start;flex: 0 0 auto;\">\n<section powered-by=\"xiumi.us\" style=\"margin-top: 10px;margin-bottom: 10px;\">\n<section style=\"display: inline-block;width: 536px;border-width: 0px 0px 0px 10px;border-style: solid;border-left-color: rgb(144, 215, 236);border-right-color: rgb(46, 172, 109);box-shadow: rgb(0, 0, 0) 0px 0px 0px;border-bottom-left-radius: 0px;\">\n<section powered-by=\"xiumi.us\" style=\"padding-right: 3px;padding-left: 3px;\">\n<section style=\"margin-top: 0.95em;margin-bottom: -0.65em;display: inline-block;width: 520px;vertical-align: top;\">\n<section style=\"width: 520px;\">\n<section style=\"margin-top: -3px;width: 6px;height: 6px;border-radius: 100%;float: right;background-color: rgb(46, 172, 109);\"><svg viewbox=\"0 0 1 1\" style=\"float:left;line-height:0;width:0;vertical-align:top;\"><\/svg><\/section>\n<\/section>\n<section style=\"margin-top: -1em;padding: 3px 10px;display: inline-block;vertical-align: top;background-color: rgb(255, 255, 255);color: rgb(0, 154, 68);\">\n<p><strong>\u5f80\u671f\u63a8\u8350<\/strong><\/p>\n<\/section>\n<\/section>\n<\/section>\n<\/section>\n<\/section>\n<section powered-by=\"xiumi.us\" style=\"text-align: justify;\">\n<section style=\"letter-spacing: 0.578px;line-height: 1.75em;\"><a target=\"_blank\" href=\"http:\/\/mp.weixin.qq.com\/s?__biz=Mzg3OTg3MjQyNg==&mid=2247491794&idx=1&sn=2b7a4de95169c79202e44813885a8250&chksm=cf7f7017f808f9015689839fe4057fd418bf7b20eb1dfb5a28cd92e56a41b5605e62bfbc16fb&scene=21#wechat_redirect\" 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