{"id":57813,"date":"2024-06-16T20:35:10","date_gmt":"2024-06-16T12:35:10","guid":{"rendered":"http:\/\/www.biocloudservice.com\/wordpress\/?p=57813"},"modified":"2024-06-16T20:35:10","modified_gmt":"2024-06-16T12:35:10","slug":"%e7%b3%96%e5%b0%bf%e7%97%85%e9%98%b2%e4%b8%8d%e8%83%9c%e9%98%b2%ef%bc%9f%e5%b0%8f%e6%9e%9c%e5%b8%a6%e4%bd%a0%e7%94%a8caret%e4%b8%80%e9%94%ae%e9%a2%84%e6%b5%8b%ef%bc%81-2","status":"publish","type":"post","link":"http:\/\/www.biocloudservice.com\/wordpress\/?p=57813","title":{"rendered":"\u7cd6\u5c3f\u75c5\u9632\u4e0d\u80dc\u9632\uff1f\u5c0f\u679c\u5e26\u4f60\u7528Caret\u4e00\u952e\u9884\u6d4b\uff01"},"content":{"rendered":"<p><html><br \/>\n<head><br \/>\n<title><\/title><br \/>\n<meta charset=\"utf-8\"><br \/>\n<meta name=\"viewport\" 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data-recalc-dims=\"1\" \/><\/section>\n<\/section>\n<\/section>\n<\/section>\n<\/section>\n<\/section>\n<\/section>\n<\/section>\n<\/section>\n<\/section>\n<\/section>\n<\/section>\n<\/section>\n<\/section>\n<\/section>\n<\/section>\n<\/section>\n<\/section>\n<\/section>\n<\/section>\n<section powered-by=\"xiumi.us\">\n<section style=\"display: contents;\" powered-by=\"xiumi.us\">\n<section style=\"display: contents;\">\n<section style=\"display: contents;\">\n<section style=\"height: 0px;overflow: hidden;\"><span style=\"font-size: 14px;letter-spacing: 0.578px;caret-color: red;\">&nbsp;<\/span><\/section>\n<\/section>\n<\/section>\n<\/section>\n<\/section>\n<\/section>\n<\/section>\n<\/section>\n<section style=\"margin: 10px 0% 8px;justify-content: flex-start;display: flex;flex-flow: row nowrap;\" powered-by=\"xiumi.us\">\n<section style=\"display: inline-block;width: 100%;vertical-align: top;border-left: 3px solid rgb(219, 219, 219);border-bottom-left-radius: 0px;padding-left: 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Arial, sans-serif;\">Caret<span style=\"font-size: 14px;\">\u5305\u7684\u4e3b\u8981\u529f\u80fd\u5305\u62ec\uff1a<\/span><o:p><\/o:p><\/span><\/p>\n<p><span style=\"text-decoration: underline;\"><strong><span style=\"text-decoration: underline;font-size: 14px;font-family: &quot;Helvetica Neue&quot;, Helvetica, &quot;Hiragino Sans GB&quot;, &quot;Microsoft YaHei&quot;, Arial, sans-serif;color: rgb(0, 122, 170);\">1. \u6570\u636e\u9884\u5904\u7406<\/span><\/strong><\/span><span style=\"font-size: 14px;font-family: &quot;Helvetica Neue&quot;, Helvetica, &quot;Hiragino Sans GB&quot;, &quot;Microsoft YaHei&quot;, Arial, sans-serif;\"><span style=\"font-size: 14px;\">\uff1aCaret\u63d0\u4f9b\u4e86\u4e00\u7cfb\u5217\u51fd\u6570\u548c\u65b9\u6cd5\uff0c\u7528\u4e8e\u6570\u636e\u7684\u9884\u5904\u7406\uff0c\u5982\u6570\u636e\u7f29\u653e\u3001\u6570\u636e\u6807\u51c6\u5316\u3001\u7f3a\u5931\u503c\u5904\u7406\u7b49\u3002\u8fd9\u4e9b\u51fd\u6570\u53ef\u4ee5\u5e2e\u52a9\u7528\u6237\u6709\u6548\u5730\u51c6\u5907\u6570\u636e\uff0c\u4ee5\u4fbf\u8fdb\u884c\u540e\u7eed\u7684\u6a21\u578b\u8bad\u7ec3\u548c\u8bc4\u4f30\u3002<\/span><o:p><\/o:p><\/span><\/p>\n<p><span style=\"text-decoration: underline;\"><strong><span style=\"text-decoration: underline;font-size: 14px;font-family: &quot;Helvetica Neue&quot;, Helvetica, &quot;Hiragino Sans GB&quot;, &quot;Microsoft YaHei&quot;, Arial, sans-serif;color: rgb(0, 122, 170);\">2. \u7b97\u6cd5\u9009\u62e9\u548c\u8bad\u7ec3<\/span><\/strong><\/span><span style=\"font-size: 14px;font-family: &quot;Helvetica Neue&quot;, Helvetica, &quot;Hiragino Sans GB&quot;, &quot;Microsoft YaHei&quot;, Arial, sans-serif;\"><span style=\"font-size: 14px;\">\uff1aCaret\u652f\u6301\u591a\u79cd\u5206\u7c7b\u548c\u56de\u5f52\u7b97\u6cd5\uff0c\u5305\u62ec\u903b\u8f91\u56de\u5f52\u3001\u652f\u6301\u5411\u91cf\u673a\u3001\u968f\u673a\u68ee\u6797\u3001\u68af\u5ea6\u63d0\u5347\u6811\u7b49\u3002\u7528\u6237\u53ef\u4ee5\u6839\u636e\u4efb\u52a1\u7684\u7279\u70b9\u548c\u6570\u636e\u7684\u6027\u8d28\u9009\u62e9\u5408\u9002\u7684\u7b97\u6cd5\uff0c\u5e76\u4f7f\u7528Caret\u63d0\u4f9b\u7684\u51fd\u6570\u8fdb\u884c\u6a21\u578b\u8bad\u7ec3\u3002<\/span><o:p><\/o:p><\/span><\/p>\n<p><span style=\"text-decoration: underline;\"><strong><span style=\"text-decoration: underline;font-size: 14px;font-family: &quot;Helvetica Neue&quot;, Helvetica, &quot;Hiragino Sans GB&quot;, &quot;Microsoft YaHei&quot;, Arial, sans-serif;color: rgb(0, 122, 170);\">3. \u6a21\u578b\u8c03\u4f18<\/span><\/strong><\/span><span style=\"font-size: 14px;font-family: &quot;Helvetica Neue&quot;, Helvetica, &quot;Hiragino Sans GB&quot;, &quot;Microsoft YaHei&quot;, Arial, sans-serif;\"><span style=\"font-size: 14px;\">\uff1aCaret\u63d0\u4f9b\u4e86\u53c2\u6570\u8c03\u4f18\u7684\u529f\u80fd\uff0c\u53ef\u4ee5\u5e2e\u52a9\u7528\u6237\u627e\u5230\u6700\u4f73\u7684\u6a21\u578b\u53c2\u6570\u7ec4\u5408\u3002\u5b83\u652f\u6301\u81ea\u52a8\u5316\u7684\u53c2\u6570\u641c\u7d22\u548c\u4ea4\u53c9\u9a8c\u8bc1\uff0c\u4ee5\u63d0\u9ad8\u6a21\u578b\u7684\u6027\u80fd\u548c\u6cdb\u5316\u80fd\u529b\u3002<\/span><o:p><\/o:p><\/span><\/p>\n<p><span style=\"text-decoration: underline;\"><strong><span style=\"text-decoration: underline;font-size: 14px;font-family: &quot;Helvetica Neue&quot;, Helvetica, &quot;Hiragino Sans GB&quot;, &quot;Microsoft YaHei&quot;, Arial, sans-serif;color: rgb(0, 122, 170);\">4. \u6a21\u578b\u8bc4\u4f30<\/span><\/strong><\/span><span style=\"font-size: 14px;font-family: &quot;Helvetica Neue&quot;, Helvetica, &quot;Hiragino Sans GB&quot;, &quot;Microsoft YaHei&quot;, Arial, sans-serif;\"><span style=\"font-size: 14px;\">\uff1aCaret\u63d0\u4f9b\u4e86\u591a\u79cd\u6027\u80fd\u5ea6\u91cf\u6307\u6807\uff0c\u5982\u51c6\u786e\u7387\u3001\u7cbe\u786e\u7387\u3001\u53ec\u56de\u7387\u3001F1\u5206\u6570\u7b49\uff0c\u53ef\u4ee5\u5e2e\u52a9\u7528\u6237\u8bc4\u4f30\u6a21\u578b\u7684\u6027\u80fd\u3002\u6b64\u5916\uff0cCaret\u8fd8\u63d0\u4f9b\u4e86\u53ef\u89c6\u5316\u5de5\u5177\uff0c\u5982ROC\u66f2\u7ebf\u3001\u6df7\u6dc6\u77e9\u9635\u7b49\uff0c\u4ee5\u5e2e\u52a9\u7528\u6237\u66f4\u597d\u5730\u7406\u89e3\u548c\u89e3\u91ca\u6a21\u578b\u7684\u6027\u80fd\u3002<\/span><o:p><\/o:p><\/span><\/p>\n<p><span style=\"text-decoration: underline;\"><strong><span style=\"text-decoration: underline;font-size: 14px;font-family: &quot;Helvetica Neue&quot;, Helvetica, &quot;Hiragino Sans GB&quot;, &quot;Microsoft YaHei&quot;, Arial, sans-serif;color: rgb(0, 122, 170);\">5. \u6a21\u578b\u96c6\u6210\u548c\u6bd4\u8f83<\/span><\/strong><\/span><span style=\"font-size: 14px;font-family: &quot;Helvetica Neue&quot;, Helvetica, &quot;Hiragino Sans GB&quot;, &quot;Microsoft YaHei&quot;, Arial, sans-serif;\"><span style=\"font-size: 14px;\">\uff1aCaret\u652f\u6301\u6a21\u578b\u7684\u96c6\u6210\u548c\u6bd4\u8f83\uff0c\u7528\u6237\u53ef\u4ee5\u901a\u8fc7\u96c6\u6210\u5b66\u4e60\u65b9\u6cd5\uff08\u5982\u968f\u673a\u68ee\u6797\u3001\u68af\u5ea6\u63d0\u5347\u6811\uff09\u6765\u63d0\u9ad8\u6a21\u578b\u7684\u51c6\u786e\u6027\u548c\u7a33\u5b9a\u6027\u3002\u6b64\u5916\uff0cCaret\u8fd8\u63d0\u4f9b\u4e86\u6a21\u578b\u6027\u80fd\u7684\u7edf\u8ba1\u6bd4\u8f83\u65b9\u6cd5\uff0c\u7528\u6237\u53ef\u4ee5\u65b9\u4fbf\u5730\u6bd4\u8f83\u4e0d\u540c\u6a21\u578b\u7684\u6027\u80fd\u5dee\u5f02\u3002<\/span><o:p><\/o:p><\/span><\/p>\n<p><br  \/><\/p>\n<p><em><span style=\"font-size: 14px;font-family: &quot;Helvetica Neue&quot;, Helvetica, &quot;Hiragino Sans GB&quot;, &quot;Microsoft YaHei&quot;, Arial, sans-serif;\">Caret<span style=\"font-size: 14px;\">\u5305\u7684\u8bbe\u8ba1\u65e8\u5728\u63d0\u4f9b\u7edf\u4e00\u7684\u63a5\u53e3\u548c\u5de5\u4f5c\u6d41\u7a0b\uff0c\u4f7f\u7528\u6237\u80fd\u591f\u66f4\u8f7b\u677e\u5730\u5e94\u7528\u673a\u5668\u5b66\u4e60\u7b97\u6cd5\u8fdb\u884c\u5206\u7c7b\u548c\u56de\u5f52\u4efb\u52a1\u3002\u5b83\u51cf\u5c11\u4e86\u7e41\u7410\u7684\u4ee3\u7801\u7f16\u5199\u548c\u91cd\u590d\u7684\u5de5\u4f5c\uff0c\u5e2e\u52a9\u7528\u6237\u66f4\u9ad8\u6548\u5730\u8fdb\u884c\u6570\u636e\u5efa\u6a21\u548c\u5206\u6790\u3002<\/span><\/span><\/em><span style=\"font-size: 14px;font-family: &quot;Helvetica Neue&quot;, Helvetica, &quot;Hiragino Sans GB&quot;, &quot;Microsoft YaHei&quot;, Arial, sans-serif;\"><span style=\"font-size: 14px;\"><\/span><o:p><\/o:p><\/span><\/p>\n<p><em><span style=\"font-size: 14px;font-family: &quot;Helvetica Neue&quot;, Helvetica, &quot;Hiragino Sans GB&quot;, &quot;Microsoft YaHei&quot;, Arial, sans-serif;\"><span style=\"font-size: 14px;\"><br  \/><\/span><\/span><\/em><\/p>\n<p><span style=\"font-size: 14px;font-family: &quot;Helvetica Neue&quot;, Helvetica, &quot;Hiragino Sans GB&quot;, &quot;Microsoft YaHei&quot;, Arial, sans-serif;\"><span style=\"font-size: 14px;\">\u603b\u4e4b\uff0c<\/span>Caret<span style=\"font-size: 14px;\">\u662f\u4e00\u4e2a\u5f3a\u5927\u800c\u7075\u6d3b\u7684<\/span><span style=\"font-size: 14px;\">R<\/span><span style=\"font-size: 14px;\">\u5305\uff0c\u9002\u7528\u4e8e\u5404\u79cd\u673a\u5668\u5b66\u4e60\u4efb\u52a1\u3002\u5b83\u4e3a\u7528\u6237\u63d0\u4f9b\u4e86\u4e30\u5bcc\u7684\u529f\u80fd\u548c\u5de5\u5177\uff0c\u4f7f\u5f97\u6570\u636e\u79d1\u5b66\u5bb6\u548c\u673a\u5668\u5b66\u4e60\u4ece\u4e1a\u8005\u80fd\u591f\u66f4\u52a0\u4fbf\u6377\u5730\u8fdb\u884c\u6a21\u578b\u7684\u8bad\u7ec3\u3001\u4f18\u5316\u548c\u8bc4\u4f30\u3002<\/span><o:p><\/o:p><\/span><\/p>\n<p><span style=\"font-size: 14px;font-family: &quot;Helvetica Neue&quot;, Helvetica, &quot;Hiragino Sans GB&quot;, &quot;Microsoft YaHei&quot;, Arial, sans-serif;\"><span style=\"font-size: 14px;\"><span style=\"font-size: 14px;\">\u5728\u5927\u6570\u636e\u65f6\u4ee3\uff0c\u6211\u4eec\u9762\u5bf9\u7684\u6570\u636e\u91cf\u5e9e\u5927\u3001\u590d\u6742\u591a\u53d8\u3002\u5982\u4f55\u4ece\u4e2d\u63d0\u53d6\u6709\u7528\u7684\u4fe1\u606f\uff0c\u63ed\u793a\u751f\u7269\u4f53\u7684\u5965\u79d8\uff1f\u4f7f\u7528<\/span>caret<span style=\"font-size: 14px;\">\uff0c\u60a8\u5c06\u80fd\u591f\u63a2\u7d22\u6570\u636e\u7684\u795e\u79d8\u9762\u7eb1\uff0c\u63ed\u793a\u9690\u85cf\u5728\u5176\u4e2d\u7684\u89c4\u5f8b\u3002\u53ea\u9700\u8981\u51e0\u884c\u7b80\u5355\u7684<\/span><span style=\"font-size: 14px;\">R<\/span><span style=\"font-size: 14px;\">\u4ee3\u7801\uff0c\u6211\u5c31\u80fd\u4e3a\u60a8\u5c55\u793a<\/span><span style=\"font-size: 14px;\">caret<\/span><span style=\"font-size: 14px;\">\u7684\u795e\u5947\u4e4b\u5904\u3002\u5c0f\u679c\u6559\u4e00\u4e0b\u5927\u5bb6\u600e\u4e48\u5728<\/span><span style=\"font-size: 14px;\">R<\/span><span style=\"font-size: 14px;\">\u8bed\u8a00\u4e2d\u4f7f\u7528<\/span><span style=\"font-size: 14px;\">caret<\/span><span style=\"font-size: 14px;\">\u5305\uff0c\u5229\u7528<\/span><\/span><span style=\"font-size: 14px;\">\u968f\u673a\u68ee\u6797\uff0c\u5bf9\u7cd6\u5c3f\u75c5\u8fdb\u884c\u9884\u6d4b\u3002\u5177\u4f53\u8981\u5982\u4f55\u5b9e\u73b0\uff1f<\/span><span style=\"font-size: 14px;\">&nbsp;<span style=\"font-size: 14px;\">\u4eca\u5929\uff0c\u5c0f<\/span><\/span><span style=\"font-size: 14px;\">\u679c\u4ee5\u4ee3\u7801\u548c\u63d0\u4f9b\u7684\u6570\u636e\u4e3a\u4f8b\u8fdb\u884c\u6f14\u793a\u548c\u8bf4\u660e\u3002<\/span><\/span><strong style=\"text-align: center;letter-spacing: 0.034em;\"><em><span style=\"font-size: 20px;\"><\/span><\/em><\/strong><\/p>\n<\/section>\n<section style=\"text-align: justify;\" powered-by=\"xiumi.us\">\n<p style=\"white-space: normal;\"><span style=\"font-size: 14px;\"><br  \/><\/span><\/p>\n<p style=\"text-align: center;white-space: normal;\"><strong><em><span style=\"font-size: 20px;\">1.<span style=\"font-family:Helvetica Neue, Helvetica, Hiragino Sans GB, Microsoft YaHei, Arial, sans-serif;\">\u8f93\u5165\u6570\u636e\u53ca\u5212\u5206\u8bad\u7ec3\u96c6\u548c\u6d4b\u8bd5\u96c6<\/span><\/span><\/em><\/strong><\/p>\n<p style=\"text-align: center;white-space: normal;\"><br  \/><\/p>\n<\/section>\n<section style=\"text-align: justify;\" powered-by=\"xiumi.us\">\n<section class=\"code-snippet__fix code-snippet__js\">\n<ul class=\"code-snippet__line-index code-snippet__js\">\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<\/ul>\n<pre class=\"code-snippet__js\" data-lang=\"sql\"><code><span class=\"code-snippet_outer\"><span class=\"code-snippet__comment\"># \u8fd9\u91cc\u7684\"inputdata.txt\"\u662f\u81ea\u884c\u51c6\u5907\u7684\u672c\u5730\u6587\u4ef6\uff0c\u5c0f\u679c\u7ed9\u5927\u5bb6\u9644\u5728\u6700\u540e\u3002<\/span><\/span><\/code><code><span class=\"code-snippet_outer\"><span class=\"code-snippet__comment\"># \u4ee5\u4e0b\u662f\u4e00\u4e2a\u7b80\u5355\u7684\u793a\u4f8b\uff0c\u5c55\u793a\u5982\u4f55\u4f7f\u7528R\u5305caret\u8fdb\u884c\u7cd6\u5c3f\u75c5\u9884\u6d4b\u6a21\u578b\u7684\u8bad\u7ec3\u548c\u8bc4\u4f30\uff1a<\/span><\/span><\/code><code><span class=\"code-snippet_outer\"><span class=\"code-snippet__comment\"># \u5b89\u88c5\u548c\u52a0\u8f7d\u6240\u9700\u7684\u5e93<\/span><\/span><\/code><code><span class=\"code-snippet_outer\"><span class=\"code-snippet__comment\"># \u5b89\u88c5\u5e76\u5bfc\u5165caret\u5305<\/span><\/span><\/code><code><span class=\"code-snippet_outer\">install.packages(<span class=\"code-snippet__string\">\"caret\"<\/span>)<\/span><\/code><code><span class=\"code-snippet_outer\"><span class=\"code-snippet__keyword\">library<\/span>(caret)<\/span><\/code><code><span class=\"code-snippet_outer\"><span class=\"code-snippet__comment\"># \u5bfc\u5165\u6570\u636e\u96c6\u4ee5\u53ca\u6570\u636e\u9884\u5904\u7406<\/span><\/span><\/code><code><span class=\"code-snippet_outer\">biological_data &lt;- read.table(<span class=\"code-snippet__string\">\"D:\/wanglab\/life\/ziyuan\/20230717\/inputdata.txt\"<\/span>,header = T)<\/span><\/code><code><span class=\"code-snippet_outer\"><br  \/><\/span><\/code><code><span class=\"code-snippet_outer\"><span class=\"code-snippet__comment\"># \u5212\u5206\u8bad\u7ec3\u96c6\u548c\u6d4b\u8bd5\u96c6<\/span><\/span><\/code><code><span class=\"code-snippet_outer\">set.seed(<span class=\"code-snippet__number\">123<\/span>)<\/span><\/code><code><span class=\"code-snippet_outer\">trainIndex &lt;- createDataPartition(<span class=\"code-snippet__number\">1<\/span>:<span class=\"code-snippet__keyword\">length<\/span>(biological_data$diabetes), p = <span class=\"code-snippet__number\">0.8<\/span>, <span class=\"code-snippet__keyword\">list<\/span> = <span class=\"code-snippet__literal\">FALSE<\/span>)<\/span><\/code><code><span class=\"code-snippet_outer\">trainData &lt;- biological_data[trainIndex, ]<\/span><\/code><code><span class=\"code-snippet_outer\">testData &lt;- biological_data[-trainIndex, ]<\/span><\/code><\/pre>\n<\/section>\n<\/section>\n<section style=\"text-align: justify;\" powered-by=\"xiumi.us\">\n<p style=\"white-space: normal;\"><br  \/><\/p>\n<p style=\"text-align: center;white-space: normal;\"><strong><em><span style=\"font-size: 20px;\">2.&nbsp;<span style=\"letter-spacing: 0.544px;\">\u5efa\u7acb\u6a21\u578b<\/span><\/span><\/em><\/strong><\/p>\n<p style=\"text-align: center;white-space: normal;font-size: 16px;\"><o:p><\/o:p><\/p>\n<\/section>\n<section style=\"text-align: justify;\" powered-by=\"xiumi.us\">\n<section class=\"code-snippet__fix code-snippet__js\">\n<ul class=\"code-snippet__line-index code-snippet__js\">\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<\/ul>\n<pre class=\"code-snippet__js\" data-lang=\"php\"><code><span class=\"code-snippet_outer\"><span class=\"code-snippet__comment\"># \u5efa\u7acb\u6a21\u578b<\/span><\/span><\/code><code><span class=\"code-snippet_outer\">fitControl &lt;- trainControl(method = <span class=\"code-snippet__string\">\"repeatedcv\"<\/span>,<span class=\"code-snippet__comment\">#method\u786e\u5b9a\u591a\u6b21\u4ea4\u53c9\u68c0\u9a8c\u7684\u62bd\u6837\u65b9\u6cd5<\/span><\/span><\/code><code><span class=\"code-snippet_outer\">                           <span class=\"code-snippet__comment\">## 10-fold CV...<\/span><\/span><\/code><code><span class=\"code-snippet_outer\">                           number = <span class=\"code-snippet__number\">10<\/span>,<span class=\"code-snippet__comment\">#number\u786e\u5b9a\u4e86\u5212\u5206\u7684\u91cd\u6570<\/span><\/span><\/code><code><span class=\"code-snippet_outer\">                           <span class=\"code-snippet__comment\">## repeated ten times<\/span><\/span><\/code><code><span class=\"code-snippet_outer\">                           repeats = <span class=\"code-snippet__number\">10<\/span>)<span class=\"code-snippet__comment\">#repeats\u786e\u5b9a\u4e86\u53cd\u590d\u6b21\u6570<\/span><\/span><\/code><code><span class=\"code-snippet_outer\"><span class=\"code-snippet__comment\"># \u6a21\u578b\u8bad\u7ec3\u548c\u8c03\u4f18\uff1a\u4f7f\u7528train\u51fd\u6570\u6765\u8bad\u7ec3\u6a21\u578b\uff0c\u5e76\u81ea\u52a8\u8c03\u4f18\u6a21\u578b\u7684\u53c2\u6570\u3002<\/span><\/span><\/code><code><span class=\"code-snippet_outer\"><span class=\"code-snippet__comment\"># \u901a\u8fc7\u6307\u5b9a\u8bad\u7ec3\u6570\u636e\u3001\u76ee\u6807\u53d8\u91cf\u4ee5\u53ca\u4e4b\u524d\u521b\u5efa\u7684\u8bad\u7ec3\u63a7\u5236\u53c2\u6570\uff0cCaret\u5c06\u4f7f\u7528\u4ea4\u53c9\u9a8c\u8bc1\u6765\u8bad\u7ec3\u548c\u8bc4\u4f30\u6a21\u578b\uff0c\u5e76\u81ea\u52a8\u641c\u7d22\u6700\u4f73\u53c2\u6570\u7ec4\u5408\u3002<\/span><\/span><\/code><code><span class=\"code-snippet_outer\">set.seed(<span class=\"code-snippet__number\">825<\/span>)<\/span><\/code><code><span class=\"code-snippet_outer\">Laplacian &lt;- train(trainData,trainData$diabetes,<\/span><\/code><code><span class=\"code-snippet_outer\">                   method = <span class=\"code-snippet__string\">\"rf\"<\/span>,<\/span><\/code><code><span class=\"code-snippet_outer\">                   preProcess = <span class=\"code-snippet__keyword\">NULL<\/span>,<\/span><\/code><code><span class=\"code-snippet_outer\">                   weights = <span class=\"code-snippet__keyword\">NULL<\/span>,<\/span><\/code><code><span class=\"code-snippet_outer\">                   metric = ifelse(is.factor(y), <span class=\"code-snippet__string\">\"Accuracy\"<\/span>, <span class=\"code-snippet__string\">\"RMSE\"<\/span>),<\/span><\/code><code><span class=\"code-snippet_outer\">                   trControl = trainControl(),<\/span><\/code><code><span class=\"code-snippet_outer\">                   tuneGrid = <span class=\"code-snippet__keyword\">NULL<\/span>,<\/span><\/code><code><span class=\"code-snippet_outer\">                   tuneLength = <span class=\"code-snippet__number\">20<\/span>)<\/span><\/code><code><span class=\"code-snippet_outer\">Laplacian<\/span><\/code><code><span class=\"code-snippet_outer\"><span class=\"code-snippet__comment\">## \u91c7\u7528RMSE\u6cd5\u9009\u53d6\u6700\u5c0f\u503c\u7684\u6700\u4f18\u6a21\u578b<\/span><\/span><\/code><code><span class=\"code-snippet_outer\"><span class=\"code-snippet__comment\">## \u6700\u7ec8\u6a21\u578b\u4f7f\u7528\u7684\u53c2\u6570\u503c\u4e3amtry = 6<\/span><\/span><\/code><\/pre>\n<\/section>\n<\/section>\n<section style=\"text-align: justify;\" powered-by=\"xiumi.us\">\n<p><br  \/><\/p>\n<p><strong><span style=\"color: rgb(51, 51, 51);font-family: &quot;Helvetica Neue&quot;, Helvetica, &quot;Hiragino Sans GB&quot;, &quot;Microsoft YaHei&quot;, Arial, sans-serif;font-size: 16px;\">\u6700\u4f18\u6a21\u578b<\/span><\/strong><span style=\"mso-spacerun:&quot;yes&quot;;font-family:&quot;Open Sans&quot;;mso-fareast-font-family:\u5b8b\u4f53;color:rgb(51,51,51);font-size:12.0000pt;mso-font-kerning:0.0000pt;\"><o:p><\/o:p><\/span><\/p>\n<p><strong><span style=\"color: rgb(51, 51, 51);font-family: &quot;Helvetica Neue&quot;, Helvetica, &quot;Hiragino Sans GB&quot;, &quot;Microsoft YaHei&quot;, Arial, sans-serif;font-size: 16px;\"><br  \/><\/span><\/strong><\/p>\n<\/section>\n<section powered-by=\"xiumi.us\">\n<p style=\"text-align: center;\"><img decoding=\"async\" class=\"rich_pages wxw-img\" data-galleryid=\"\" data-ratio=\"0.590316573556797\" data-s=\"300,640\" src=\"https:\/\/i0.wp.com\/www.biocloudservice.com\/wordpress\/wp-content\/uploads\/2024\/06\/2_Aq6KwdhRhgWMuicyaF5HtpicNho5OA.png?w=640\" onerror=\"this.src='https:\/\/mmbiz.qpic.cn\/sz_mmbiz_png\/zcicibWZessAztctFDciaTgXQTByLub6rkEl5b85355sKmWahH5TmEEEx5061Aq6KwdhRhgWMuicyaF5HtpicNho5OA\/640?wx_fmt=png'\" data-type=\"png\" data-w=\"537\" style=\"\" data-recalc-dims=\"1\"><\/p>\n<p><br  \/><\/p>\n<p><span style=\"font-family: &quot;Helvetica Neue&quot;, Helvetica, &quot;Hiragino Sans GB&quot;, &quot;Microsoft YaHei&quot;, Arial, sans-serif;font-size: 10.5pt;\">ggplot(Laplacian) + scale_x_log10()<o:p><\/o:p><\/span><\/p>\n<p><span style=\"font-family: &quot;Helvetica Neue&quot;, Helvetica, &quot;Hiragino Sans GB&quot;, &quot;Microsoft YaHei&quot;, Arial, sans-serif;font-size: 10.5pt;\"># \u6570\u636e\u7684\u66f2\u7ebf\u56fe\u8868\u660e\uff0c\u5f53mtry \u5927\u4e8e6\u65f6\uff0c\u6a21\u578b\u6ca1\u6709\u53d8\u5316<\/span><span style=\"mso-spacerun:&#39;yes&#39;;font-family:Calibri;mso-fareast-font-family:\u5b8b\u4f53;mso-bidi-font-family:&#39;Times New Roman&#39;;font-size:10.5000pt;mso-font-kerning:1.0000pt;\"><o:p><\/o:p><\/span><\/p>\n<p><span style=\"font-family: &quot;Helvetica Neue&quot;, Helvetica, &quot;Hiragino Sans GB&quot;, &quot;Microsoft YaHei&quot;, Arial, sans-serif;font-size: 10.5pt;\"><br  \/><\/span><\/p>\n<p><span style=\"font-size: 16px;font-family: &quot;Helvetica Neue&quot;, Helvetica, &quot;Hiragino Sans GB&quot;, &quot;Microsoft YaHei&quot;, Arial, sans-serif;\"><strong>\u6700\u4f18\u6a21\u578b\u9009\u62e9\u7684\u66f2\u7ebf\u56fe<\/strong><strong><span style=\"font-family: &quot;Times New Roman&quot;;font-size: 10.5pt;\"><o:p><\/o:p><\/span><\/strong><\/span><\/p>\n<p><br  \/><\/p>\n<p style=\"text-align: center;\"><img decoding=\"async\" class=\"rich_pages wxw-img\" data-galleryid=\"\" data-ratio=\"0.9799196787148594\" data-s=\"300,640\" src=\"https:\/\/i0.wp.com\/www.biocloudservice.com\/wordpress\/wp-content\/uploads\/2024\/06\/3_cSmIVBBfGFNIMudJD6aAspIOibfjrg.png?w=640\" onerror=\"this.src='https:\/\/mmbiz.qpic.cn\/sz_mmbiz_png\/zcicibWZessAztctFDciaTgXQTByLub6rkEBiaVDYSUsdjggiaicz0j0zSoK3LecSmIVBBfGFNIMudJD6aAspIOibfjrg\/640?wx_fmt=png'\" data-type=\"png\" data-w=\"498\" style=\"\" data-recalc-dims=\"1\"><\/p>\n<p><br  \/><\/p>\n<p><span style=\"font-family: &quot;Helvetica Neue&quot;, Helvetica, &quot;Hiragino Sans GB&quot;, &quot;Microsoft YaHei&quot;, Arial, sans-serif;font-size: 10.5pt;\"><br  \/><\/span><\/p>\n<p style=\"text-align: center;white-space: normal;\"><strong><em><span style=\"font-size: 20px;\">3.\u8fdb\u884c\u9884\u6d4b<\/span><\/em><\/strong><strong style=\"letter-spacing: 0.034em;\"><\/strong><\/p>\n<p><br  \/><\/p>\n<section class=\"code-snippet__fix code-snippet__js\">\n<ul class=\"code-snippet__line-index code-snippet__js\">\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<\/ul>\n<pre class=\"code-snippet__js\" data-lang=\"php\"><code><span class=\"code-snippet_outer\"># \u8fdb\u884c\u9884\u6d4b<\/span><\/code><code><span class=\"code-snippet_outer\">predictions &lt;- predict(Laplacian, newdata = testData)# \u5728\u6d4b\u8bd5\u96c6\u4e0a\u8fdb\u884c\u9884\u6d4b<\/span><\/code><code><span class=\"code-snippet_outer\">print(predictions)# \u67e5\u770b\u9884\u6d4b\u7ed3\u679c<\/span><\/code><code><span class=\"code-snippet_outer\"># 2.\u7ed8\u5236\u6df7\u6dc6\u77e9\u9635\u56fe<\/span><\/code><code><span class=\"code-snippet_outer\"># \u63d0\u53d6\u9884\u6d4b\u7ed3\u679c<\/span><\/code><code><span class=\"code-snippet_outer\">predictions_df &lt;- as.data.frame(predictions)<\/span><\/code><code><span class=\"code-snippet_outer\"># \u5c06\u9884\u6d4b\u7ed3\u679c\u548c\u5b9e\u9645\u503c\u5408\u5e76\u4e3a\u6570\u636e\u6846<\/span><\/code><code><span class=\"code-snippet_outer\">result_df &lt;- data.frame(Predicted = ifelse(predictions_df$predict &gt; 0.5, \"1\", \"0\"), Actual = as.vector(testData$diabetes))# \u8f6c\u6362\u4e3a\u4e8c\u5206\u7c7b\u9884\u6d4b\u7ed3\u679c<\/span><\/code><\/pre>\n<\/section>\n<p style=\"text-align: center;\"><br  \/><\/p>\n<p style=\"text-align: center;\"><strong style=\"font-size: 16px;letter-spacing: 0.578px;text-align: center;text-wrap: wrap;\"><em><span style=\"font-size: 20px;\">4.\u7ed8\u5236\u6df7\u6dc6\u77e9\u9635\u56fe<\/span><\/em><\/strong><\/p>\n<p><br  \/><\/p>\n<section class=\"code-snippet__fix code-snippet__js\">\n<ul class=\"code-snippet__line-index code-snippet__js\">\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<\/ul>\n<pre class=\"code-snippet__js\" data-lang=\"php\"><code><span class=\"code-snippet_outer\"># \u7ed8\u5236\u6df7\u6dc6\u77e9\u9635<\/span><\/code><code><span class=\"code-snippet_outer\">confusion_matrix &lt;- table(result_df$Predicted, result_df$Actual)<\/span><\/code><code><span class=\"code-snippet_outer\">confusion_matrix_plot &lt;- ggplot(as.data.frame(confusion_matrix), aes(x = Var1, y = Var2, fill = Freq)) +<\/span><\/code><code><span class=\"code-snippet_outer\">  geom_tile() +<\/span><\/code><code><span class=\"code-snippet_outer\">  geom_text(aes(label = Freq), color = \"white\", size = 12) +<\/span><\/code><code><span class=\"code-snippet_outer\">  labs(title = \"Confusion Matrix\") +<\/span><\/code><code><span class=\"code-snippet_outer\">  xlab(\"Predicted\") +<\/span><\/code><code><span class=\"code-snippet_outer\">  ylab(\"Actual\") +<\/span><\/code><code><span class=\"code-snippet_outer\">  scale_fill_gradient(low = \"lightblue\", high = \"darkblue\")<\/span><\/code><code><span class=\"code-snippet_outer\"># \u663e\u793a\u6df7\u6dc6\u77e9\u9635\u56fe<\/span><\/code><code><span class=\"code-snippet_outer\">print(confusion_matrix_plot)<\/span><\/code><\/pre>\n<\/section>\n<p style=\"text-align: center;\"><br  \/><\/p>\n<p><span style=\"font-size: 16px;font-family: &quot;Helvetica Neue&quot;, Helvetica, &quot;Hiragino Sans GB&quot;, &quot;Microsoft YaHei&quot;, Arial, sans-serif;\"><strong>\u6df7\u6dc6\u77e9\u9635\u56fe<\/strong><\/span><span style=\"font-family: &quot;Times New Roman&quot;;color: rgb(0, 0, 255);font-size: 10.5pt;\"><o:p><\/o:p><\/span><\/p>\n<p><span style=\"font-size: 16px;font-family: &quot;Helvetica Neue&quot;, Helvetica, &quot;Hiragino Sans GB&quot;, &quot;Microsoft YaHei&quot;, Arial, sans-serif;\"><strong><br  \/><\/strong><\/span><\/p>\n<p style=\"text-align: center;\"><img decoding=\"async\" class=\"rich_pages wxw-img\" data-galleryid=\"\" data-ratio=\"0.9104046242774566\" data-s=\"300,640\" src=\"https:\/\/i0.wp.com\/www.biocloudservice.com\/wordpress\/wp-content\/uploads\/2024\/06\/4_fVbokfrwaGQEL6vcX9vYnFbS9lwItQ.png?w=640\" onerror=\"this.src='https:\/\/mmbiz.qpic.cn\/sz_mmbiz_png\/zcicibWZessAztctFDciaTgXQTByLub6rkEctxaftOtRLSGeeiaiaUhWU7fLtfVbokfrwaGQEL6vcX9vYnFbS9lwItQ\/640?wx_fmt=png'\" data-type=\"png\" data-w=\"692\" style=\"\" data-recalc-dims=\"1\"><\/p>\n<p><br  \/><\/p>\n<p style=\"text-align: center;\"><strong style=\"font-size: 16px;letter-spacing: 0.578px;text-align: center;text-wrap: wrap;\"><em><span style=\"font-size: 20px;\">5.<\/span><\/em><\/strong><strong style=\"font-size: 16px;letter-spacing: 0.578px;text-align: center;text-wrap: wrap;\"><em><span style=\"font-size: 20px;\">\u7ed8\u5236AUC\u66f2\u7ebf\u56fe<\/span><\/em><\/strong><\/p>\n<p><br  \/><\/p>\n<section class=\"code-snippet__fix code-snippet__js\">\n<ul class=\"code-snippet__line-index code-snippet__js\">\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<\/ul>\n<pre class=\"code-snippet__js\" data-lang=\"php\"><code><span class=\"code-snippet_outer\"># 5.\u7ed8\u5236AUC\u66f2\u7ebf\u56fe<\/span><\/code><code><span class=\"code-snippet_outer\">library(pROC)<\/span><\/code><code><span class=\"code-snippet_outer\">roc &lt;- pROC::roc(as.numeric(result_df$Actual), predictions_df$predict)# \u8ba1\u7b97AUC<\/span><\/code><code><span class=\"code-snippet_outer\">plot(roc, main = \"Receiver Operating Characteristic (ROC) Curve\", <\/span><\/code><code><span class=\"code-snippet_outer\">     xlab = \"1 - Specificity\", ylab = \"Sensitivity\",<\/span><\/code><code><span class=\"code-snippet_outer\">     print.auc=TRUE,#\u663e\u793aAUC\u9762\u79ef<\/span><\/code><code><span class=\"code-snippet_outer\">     print.thres=TRUE)#\u6dfb\u52a0\u622a\u70b9\u548c95%CI)# \u7ed8\u5236AUC\u66f2\u7ebf<\/span><\/code><code><span class=\"code-snippet_outer\">     )# \u7ed8\u5236AUC\u66f2\u7ebf<\/span><\/code><code><span class=\"code-snippet_outer\"><br  \/><\/span><\/code><code><span class=\"code-snippet_outer\">print(paste(\"AUC:\", round(auc(roc), 2)))# \u663e\u793aAUC\u503c\u4e3a1<\/span><\/code><code><span class=\"code-snippet_outer\"># \u8bf7\u786e\u4fdd\u5c06\u8def\u5f84\"inputdata.txt\"\u66ff\u6362\u4e3a\u5b9e\u9645\u6570\u636e\u96c6\u6587\u4ef6\u7684\u8def\u5f84\uff0c\u5e76\u6839\u636e\u9700\u8981\u8c03\u6574\u6a21\u578b\u53c2\u6570\u548c\u5176\u4ed6\u914d\u7f6e\u3002<\/span><\/code><code><span class=\"code-snippet_outer\"># \u4ee5\u4e0a\u4ee3\u7801\u4f7f\u7528pROC\u5e93\u8ba1\u7b97AUC\uff0c\u5e76\u4f7f\u7528plot\u51fd\u6570\u7ed8\u5236AUC\u66f2\u7ebf\u3002\u6700\u540e\uff0c\u901a\u8fc7\u8c03\u7528auc\u51fd\u6570\u83b7\u53d6AUC\u503c\uff0c\u5e76\u4f7f\u7528print\u51fd\u6570\u663e\u793a\u5728\u56fe\u5f62\u4e0a\u3002<\/span><\/code><code><span class=\"code-snippet_outer\"># \u6ce8\u610f\uff1a\u5728\u7ed8\u5236AUC\u66f2\u7ebf\u4e4b\u524d\uff0c\u786e\u4fdd\u60a8\u7684\u6a21\u578b\u8f93\u51fa\u7684\u662f\u9884\u6d4b\u7684\u6982\u7387\u503c\uff0c\u800c\u4e0d\u662f\u7c7b\u522b\u6807\u7b7e\u3002<\/span><\/code><\/pre>\n<\/section>\n<p style=\"text-align: center;\"><br  \/><\/p>\n<p style=\"text-align: left;\"><strong>AUC\u66f2\u7ebf\u56fe<\/strong><br  \/><\/p>\n<p style=\"text-align: left;\"><strong><br  \/><\/strong><\/p>\n<p style=\"text-align: center;\"><img decoding=\"async\" class=\"rich_pages wxw-img\" data-galleryid=\"\" data-ratio=\"0.8508474576271187\" data-s=\"300,640\" src=\"https:\/\/i0.wp.com\/www.biocloudservice.com\/wordpress\/wp-content\/uploads\/2024\/06\/5_koxLYGoBPwQFb6iahpnDKfnELD3plA.png?w=640\" onerror=\"this.src='https:\/\/mmbiz.qpic.cn\/sz_mmbiz_png\/zcicibWZessAztctFDciaTgXQTByLub6rkEKqQdHSaoGc1zWev6lOSJY5gKdkoxLYGoBPwQFb6iahpnDKfnELD3plA\/640?wx_fmt=png'\" data-type=\"png\" data-w=\"590\" style=\"\" data-recalc-dims=\"1\"><\/p>\n<p style=\"text-align: center;\"><br  \/><\/p>\n<p><br  \/><\/p>\n<p><br  \/><\/p>\n<p><span style=\"font-size: 14px;font-family: &quot;Helvetica Neue&quot;, Helvetica, &quot;Hiragino Sans GB&quot;, &quot;Microsoft YaHei&quot;, Arial, sans-serif;\">\u901a\u8fc7\u4e0a\u8ff0\u4ee3\u7801\uff0c\u60a8\u5c06\u53ef\u4ee5\u8f7b\u677e\u6784\u5efa\u4e00\u4e2a\u57fa\u4e8e\u968f\u673a\u68ee\u6797\u7684\u9884\u6d4b\u6a21\u578b\uff0c\u7528\u4e8e\u89e3\u6790\u751f\u7269\u6570\u636e\u4e2d\u7684\u4fe1\u606f\u3002caret\u63d0\u4f9b\u4e86\u591a\u79cd\u673a\u5668\u5b66\u4e60\u7b97\u6cd5\u548c\u6a21\u578b\u8bc4\u4f30\u65b9\u6cd5\uff0c\u5e2e\u52a9\u60a8\u9009\u62e9\u6700\u5408\u9002\u7684\u6a21\u578b\uff0c\u5e76\u8bc4\u4f30\u5176\u6027\u80fd\u3002\u5982\u540c\u63a2\u9669\u5bb6\u4e00\u6837\uff0c\u60a8\u5c06\u4e0ecaret\u4e00\u540c\u63a2\u7d22\u6570\u636e\u7684\u672a\u77e5\u9886\u57df\u3002\u63ed\u793a\u751f\u7269\u4f53\u5185\u6f5c\u5728\u7684\u79d8\u5bc6\uff0c\u662f\u4e00\u6b21\u60ca\u9669\u53c8\u6709\u8da3\u7684\u5192\u9669\u4e4b\u65c5\u3002<\/span><o:p><\/o:p><\/p>\n<p><span style=\"font-size: 14px;font-family: &quot;Helvetica Neue&quot;, Helvetica, &quot;Hiragino Sans GB&quot;, &quot;Microsoft YaHei&quot;, Arial, sans-serif;\">\u4f46\u662f\u8981\u66f4\u65b9\u4fbf\u5f97\u4f7f\u7528\u751f\u4fe1\u5de5\u5177\uff0c\u6211\u4e0d\u5f97\u4e0d\u5411\u5927\u5bb6\u63a8\u8350\u6211\u4eec\u7684\u4e91\u751f\u4fe1\u5e73\u53f0\uff08http:\/\/www.biocloudservice.com\/home.html\uff09\u3002\u4e91\u751f\u4fe1\u5e73\u53f0\u662f\u4e00\u4e2a\u5168\u9762\u652f\u6301\u751f\u7269\u4fe1\u606f\u5b66\u5e94\u7528\u7684\u5e73\u53f0\uff0c\u4e3a\u7814\u7a76\u4eba\u5458\u548c\u533b\u7597\u4e13\u4e1a\u4eba\u5458\u63d0\u4f9b\u9ad8\u8d28\u91cf\u7684\u6570\u636e\u5206\u6790\u548c\u89e3\u51b3\u65b9\u6848\u3002\u5728\u4e91\u751f\u4fe1\u5e73\u53f0\u4e0a\uff0c\u60a8\u53ef\u4ee5\u53d1\u73b0\u66f4\u591a\u5f3a\u5927\u7684\u5de5\u5177\uff0c\u4e0e\u5176\u4ed6\u7814\u7a76\u8005\u5171\u4eab\u7ecf\u9a8c\uff0c\u5e76\u5171\u540c\u63a8\u52a8\u751f\u7269\u4fe1\u606f\u5b66\u7684\u53d1\u5c55\u3002<\/span><o:p><\/o:p><\/p>\n<p><span style=\"font-size: 14px;font-family: &quot;Helvetica Neue&quot;, Helvetica, &quot;Hiragino Sans GB&quot;, &quot;Microsoft 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