<\/title><br \/>\n<meta charset=\"utf-8\"><br \/>\n<meta name=\"viewport\" content=\"width=device-width,initial-scale=1.0,maximum-scale=1.0,user-scalable=0,viewport-fit=cover\"><\/p>\n<style>\n*{margin:0;padding:0}html{-ms-text-size-adjust:100%;-webkit-text-size-adjust:100%;line-height:1.6}img{z-index:999;position:relative;max-width:100%;margin:10px 0;}body{letter-spacing:.034em}h1,h2,h3,h4,h5,h6{font-weight:400;font-size:16px}a{color:#576b95;text-decoration:none;-webkit-tap-highlight-color:rgba(0,0,0,0)}td,th{word-wrap:break-word;padding:5px 10px;border:1px solid #DDD;}table{margin-bottom:10px;border-collapse:collapse;display:table;width:100%!important;}.appmsg_skin_default .rich_media_area_primary{background-color:#fff}.appmsg_skin_default .rich_media_area_primary .weui-loadmore_line .weui-loadmore__tips{background-color:#fff}.rich_media_area_primary{padding:20px 16px 12px;background-color:#fafafa}@media (max-width:375px){.rich_media_area_primary{padding:20px 60px 15px 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#33ab01;margin-right:5px;}.ad{text-decoration:none;color:#d6d4d4;font-size:12px;}.msgBodyReply{padding-top:5px;}.userName span{float:right;color:#afafaf;font-size:14px;}code{text-align:left;font-size:14px;display:block;white-space:pre;display:-webkit-box;display:-webkit-flex;display:flex;position:relative;}.code-snippet__fix{font-size:14px;margin:10px 0;display:block;color:#333;position:relative;background-color:rgba(0,0,0,0.03);border:1px solid #f0f0f0;border-radius:2px;display:-webkit-box;display:-webkit-flex;display:flex;padding-left:25px;line-height:26px}.code-snippet__fix code{text-align:left;font-size:14px;display:block;white-space:pre;display:-webkit-box;display:-webkit-flex;display:flex;position:relative;font-family:Consolas,\"Liberation Mono\",Menlo,Courier,monospace}.code-snippet__comment,.code-snippet__quote{color:#afafaf;font-style:italic}.code-snippet__keyword,.code-snippet__selector-tag,.code-snippet__subst{color:#ca7d37}.code-snippet__number,.code-snippet__literal,.code-snippet__variable,.code-snippet__template-variable,.code-snippet__tag .code-snippet__attr{color:#0e9ce5}.code-snippet__string,.code-snippet__doctag{color:#d14}.code-snippet__title,.code-snippet__section,.code-snippet__selector-id{color:#d14}.code-snippet__subst{font-weight:normal}.code-snippet__type,.code-snippet__class .code-snippet__title{color:#0e9ce5}.code-snippet__tag,.code-snippet__name,.code-snippet__attribute{color:#0e9ce5;font-weight:normal}.code-snippet__regexp,.code-snippet__link{color:#ca7d37}.code-snippet__symbol,.code-snippet__bullet{color:#d14}.code-snippet__built_in,.code-snippet__builtin-name{color:#ca7d37}.code-snippet__meta{color:#afafaf}.code-snippet__deletion{background:#fdd}.code-snippet__addition{background:#dfd}.code-snippet__emphasis{font-style:italic}.code-snippet__strong{font-weight:bold}.account_avatar{width:40px;height:40px;padding:0;}.account_info{display:-webkit-box;display:-webkit-flex;display:flex;-webkit-box-align:center;-webkit-align-items:center;padding:20px 0;align-items:center}.flex_bd{padding-left:14px;}.account_nickname{display:inline-block;vertical-align:middle;line-height:1.2;color:#576b95;font-size:14px}.account_desc{overflow:hidden;text-overflow:ellipsis;display:-webkit-box;-webkit-box-orient:vertical;-webkit-line-clamp:1;color:rgba(0,0,0,0.3);font-size:14px;line-height:1.2;padding-top:.4em}.msg_source_url{text-align:left;word-break:break-all;margin-top:20px;}.msg_source_url a{padding-right:10px;}.msg_source_url .url_text{color:#a8a8a8;}.video-desc{font-size:14px;margin-top:15px;color:#6c6c6c;}.msg_source_url{text-align:left;}.original_primary_card_tips{color:rgba(0,0,0,0.3);line-height:1.4;font-size:15px;}.weui-flex__item{margin-bottom:20px;padding:20px 16px;margin-top:16px;line-height:1.4;align-items:center;background-color:#f7f7f7;border-radius:8px;position:relative;}.original_primary_desc{color:rgba(0,0,0,0.5);font-size:14px;padding-top:4px;width:auto;overflow:hidden;text-overflow:ellipsis;}.msgBodyReplyList{border-top:1px solid #e1e1e1;margin-top:10px;}.msgBodyReplyListTop{border-top:0;}.reply_like_num{float:right;font-size:14px;color:#c7c7c7;}.msgData{margin-top:20px;color:#626262;}.msgData span{font-size:14px;padding-right:15px;}.msgData .likes{float:right;padding-right:0;}.js_text_content p{font-size:18px;}.rich_media_meta_link{font-size:15px;}blockquote {padding-left: 10px;border-left: 3px solid #dbdbdb;color: rgba(0,0,0,0.5);font-size: 15px;padding-top: 4px;margin: 1em 0;}.video_iframe{width:500px;height:400px;}.blockquote_info{color:#b5b5b5;margin-top:10px;}#copyright_logo{color:#bdbdbd;}.rich_media_meta_list{margin-bottom:10px;}.reprint{background:#efefef;border-radius:5px;padding:8px;color:#1f1f1f;}.reprint a{word-break:break-all;}.topic{color:#8e8e8e;background:#f7f7f7;border-radius:5px;padding:10px 8px;}.topic a{padding-right:5px;}.topic p{margin-bottom:5px;}\n<\/style>\n<link href=\"https:\/\/www.juyifx.cn\/config\/css\/wxArticle.css\" rel=\"stylesheet\"\/>\n<\/head><script>\nvar data={\"mp\":\"\u751f\u4fe1\u679c\",\"title\":\"R\u5305\u5b89\u88c5\u5e38\u89c1\u62a5\u9519\uff0c\u5feb\u6765\u770b\u770b\u600e\u4e48\u89e3\u51b3\",\"time\":\"2023-05-15 19:00:58\",\"timeStamp\":\"1684148458\"};\n<\/script><br \/>\n<body><\/p>\n<div class=\"rich_media\">\n<h1 class=\"rich_media_title\" id=\"activity-name\"><a href=\"http:\/\/mp.weixin.qq.com\/s?__biz=Mzg3OTg3MjQyNg==&mid=2247487596&idx=1&sn=95d4b3704a4cfa6eb6b3a5d4aee56791&chksm=cf7c80a9f80b09bf60454b04ed266efd2ddcacdab522b6468fba01d6e1671feb4eeb0dcf0174#rd\" target=\"_blank\" rel=\"noopener\">R\u5305\u5b89\u88c5\u5e38\u89c1\u62a5\u9519\uff0c\u5feb\u6765\u770b\u770b\u600e\u4e48\u89e3\u51b3<\/a><\/h1>\n<div id=\"meta_content\" class=\"rich_media_meta_list\"><span id=\"copyright_logo\" class=\"wx_tap_link js_wx_tap_highlight rich_media_meta icon_appmsg_tag appmsg_title_tag weui-wa-hotarea\">\u539f\u521b <\/span><span class=\"rich_media_meta rich_media_meta_text\">\u5c0f\u679c <\/span><span class=\"rich_media_meta rich_media_meta_nickname\" id=\"profileBt\"><a href=\"javascript:void(0);\" class=\"wx_tap_link js_wx_tap_highlight weui-wa-hotarea\" id=\"js_name\">\u751f\u4fe1\u679c <\/a><\/span><em id=\"publish_time\" class=\"rich_media_meta rich_media_meta_text\">2023-05-15 19:00:58<\/em><\/div>\n<p><content><\/p>\n<section data-role=\"outer\" label=\"edit by 135editor\">\n<section style=\"letter-spacing: 0.578px;font-size: 16px;\">\n<section>\n<section>\n<section>\n<section>\n<section>\n<section data-width=\"100%\" style=\"width: 100%;flex: 0 0 100%;opacity: 1;\">\n<section style=\"line-height: 1.8;\">\n<section>\n<section>\n<section style=\"margin-top: 10px;margin-bottom: 20px;display: flex;flex-flow: row nowrap;text-align: center;justify-content: center;\">\n<section style=\"display: inline-block;width: 100%;vertical-align: top;border-style: solid;border-width: 1px;border-color: rgb(67, 67, 67);flex: 0 0 auto;align-self: flex-start;height: auto;box-shadow: rgb(255, 219, 118) 6px 6px 0px;background-color: rgb(255, 255, 255);\">\n<section style=\"text-align: left;justify-content: flex-start;display: flex;flex-flow: row nowrap;\">\n<section style=\"display: inline-block;width: 70%;vertical-align: top;align-self: flex-start;flex: 0 0 auto;height: auto;max-width: 70% !important;\">\n<section style=\"margin-top: 10px;\">\n<section style=\"text-align: center;\">\n<p style=\"text-indent: 0em;line-height: 1.75em;\"><span style=\"letter-spacing: 0.5px;\"><strong><span style=\"font-size: 15px;\">\u751f\u4fe1\u4ebaR\u8bed\u8a00\u5b66\u4e60\u5fc5\u5907<\/span><\/strong><\/span><\/p>\n<p style=\"text-indent: 0em;line-height: 1.75em;\"><span style=\"letter-spacing: 0.5px;\"><strong><span style=\"font-size: 15px;\">\u7acb\u523b\u62e5\u6709\u4e00\u4e2aRstudio\u8d26\u53f7<\/span><\/strong><\/span><\/p>\n<p style=\"text-indent: 0em;line-height: 1.75em;\"><span style=\"letter-spacing: 0.5px;\"><strong><span style=\"font-size: 15px;\">\u5f00\u542f\u5347\u7ea7\u6a21\u5f0f\u5427<\/span><\/strong><\/span><\/p>\n<p style=\"text-indent: 0em;line-height: 1.75em;\"><span style=\"color: rgb(255, 129, 36);font-size: 12px;letter-spacing: 0.5px;\">\uff0856\u7ebf\u7a0b\uff0c256G\u5185\u5b58\uff0c\u4e2a\u4eba\u5b58\u50a81T\uff09<\/span><\/p>\n<\/section>\n<\/section>\n<\/section>\n<section style=\"display: inline-block;width: 30%;vertical-align: top;align-self: flex-start;flex: 0 0 auto;height: auto;max-width: 30% !important;\">\n<section style=\"margin-top: 10px;margin-bottom: 10px;text-align: center;line-height: 0;\">\n<section style=\"vertical-align: middle;display: inline-block;line-height: 0;\">\n<p style=\"text-indent: 0em;line-height: 1.75em;\"><img decoding=\"async\" class=\"rich_pages wxw-img\" data-cropselx1=\"0\" data-cropselx2=\"162\" data-cropsely1=\"0\" data-cropsely2=\"162\" data-ratio=\"1\" src=\"https:\/\/i0.wp.com\/www.biocloudservice.com\/wordpress\/wp-content\/uploads\/2024\/06\/1_ib2l1ye6HNIkwTG696C2pf9yAtdeGA-44.png?w=640\" onerror=\"this.src='https:\/\/mmbiz.qpic.cn\/mmbiz_png\/zcicibWZessAyB69UyXDLG0wQcISNwmL6DlpIKVBnCSOXHTWJhLcxic2qtibaib2l1ye6HNIkwTG696C2pf9yAtdeGA\/640?wx_fmt=png'\" data-type=\"jpeg\" data-w=\"400\" style=\"height: 111px;vertical-align: middle;width: 111px;\" data-recalc-dims=\"1\" \/><\/p>\n<\/section>\n<\/section>\n<\/section>\n<\/section>\n<\/section>\n<\/section>\n<\/section>\n<\/section>\n<\/section>\n<\/section>\n<section data-role=\"list\">\n<ul class=\"list-paddingleft-1\" style=\"padding-left: 30px;width: 100%;list-style-position: outside;\">\n<li>\n<p style=\"text-align:justify;text-indent: 0em;line-height: 1.75em;\"><span style=\"font-size: 14px;letter-spacing: 0.5px;line-height: 2em;\"><span style=\"font-family: \u5b8b\u4f53;\"><span style=\"caret-color: rgb(255, 0, 0);font-family: mp-quote, -apple-system-font, BlinkMacSystemFont, "Helvetica Neue", "PingFang SC", "Hiragino Sans GB", "Microsoft YaHei UI", "Microsoft YaHei", Arial, sans-serif;\">\u5c0f\u679c\u5982\u671f\u800c\u81f3\uff0c\u5c0f\u4f19\u4f34\u4eec\u6709\u6ca1\u6709\u60f3\u6211\u5462\u3002\u5c0f\u679c\u5728\u5b89\u88c5R\u5305SpatialExperiment\u65f6\u9047\u5230\u4e86\u4e00\u4e9b\u62a5\u9519\uff0cR\u5305\u5b89\u88c5\u62a5\u9519\u662f\u4e00\u4ef6\u5f88\u5934\u75db\u7684\u4e8b\u60c5\uff0c\u56e0\u4e3a\u5305\u5b89\u88c5\u4e0d\u4e86\uff0c\u540e\u9762\u7684\u5206\u6790\u90fd\u65e0\u6cd5\u8fdb\u884c\u4e86\u3002\u5728\u4f7f\u7528R\u5b89\u88c5\u5305\u65f6\u5927\u5bb6\u6216\u591a\u6216\u5c11\u90fd\u4f1a\u9047\u5230\u62a5\u9519\uff0c\u90a3\u73b0\u5728\u5c0f\u679c\u5c31\u5206\u4eab\u7ed9\u5927\u5bb6R\u5305\u5b89\u88c5\u7684\u5e38\u7528\u62a5\u9519\u4ee5\u53ca\u89e3\u51b3\u529e\u6cd5\u3002<\/span><\/span><\/span><\/p>\n<p style=\"text-align:justify;text-indent: 0em;line-height: 1.75em;\"><br \/><\/p>\n<\/li>\n<\/ul>\n<section style=\"height: 0px;overflow: hidden;\"><br \/><\/section>\n<section style=\"height: 0px;overflow: hidden;\"><br \/><\/section>\n<section>\n<section style=\"font-size: 16px;\">\n<section powered-by=\"xiumi.us\">\n<p style=\"white-space: normal;\"><span style=\"font-size: 14px;\">\u5c0f\u679c\u5728\u672c\u5730\u5b89\u88c5\u6b64\u5305\u6bd4\u8f83\u6162\uff0c\u56e0\u6b64\u5728\u670d\u52a1\u5668\u4e0a\u8fd0\u884c\u5b89\u88c5R\u5305\u7684\u7a0b\u5e8f\u3002<\/span><\/p>\n<p style=\"white-space: normal;\"><span style=\"font-size: 14px;\">\u5b89\u88c5\u4ee3\u7801\uff1a<\/span><\/p>\n<\/section>\n<section class=\"code-snippet__fix code-snippet__js\">\n<ul class=\"code-snippet__line-index code-snippet__js\">\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<\/ul>\n<pre class=\"code-snippet__js\" data-lang=\"c\"><code><span class=\"code-snippet_outer\">#! \/usr\/bin\/Rscript<\/span><\/code><code><span class=\"code-snippet_outer\">#\u6b64\u4e3ashebang line\uff0c\u7528\u4e8e\u6307\u5b9a\u811a\u672c\u89e3\u91ca\u5668\u7684\u8def\u5f84\u3002\u5728\u8fd9\u4e2a\u4f8b\u5b50\u4e2d\uff0c\u6307\u5b9a\u4e86Rscript\u7684\u8def\u5f84\u4e3a\/usr\/bin\/Rscript\u3002<\/span><\/code><code><span class=\"code-snippet_outer\">#\u5b89\u88c5<\/span><\/code><code><span class=\"code-snippet_outer\"><span class=\"code-snippet__keyword\">if<\/span> (!require(<span class=\"code-snippet__string\">\"BiocManager\"<\/span>, quietly = TRUE))<\/span><\/code><code><span class=\"code-snippet_outer\">install.packages(<span class=\"code-snippet__string\">\"BiocManager\"<\/span>)<\/span><\/code><code><span class=\"code-snippet_outer\">BiocManager::install(<span class=\"code-snippet__string\">\"SpatialExperiment\"<\/span>)<\/span><\/code><\/pre>\n<\/section>\n<section powered-by=\"xiumi.us\">\n<p style=\"white-space: normal;\"><br \/><\/p>\n<p style=\"text-align: left;white-space: normal;\"><strong><em><span style=\"font-size: 18px;color: rgb(62, 62, 62);\">\u95ee\u98981\uff1a<\/span><\/em><\/strong><\/p>\n<p style=\"white-space: normal;\"><span style=\"font-size: 14px;\">\u5728\u5b89\u88c5\u8fc7\u7a0b\u4e2d\u9047\u5230\u4e86there is no package called \u2018 \u2019 \u8fd9\u7c7b\u578b\u7684\u62a5\u9519\uff0c\u4e3b\u8981\u95ee\u9898\u662f\u8bf4\u4e0d\u5b58\u5728\u67d0\u5305\uff0c\u9047\u5230\u8fd9\u79cd\u62a5\u9519\uff0c\u89e3\u51b3\u529e\u6cd5\u662f\uff1a\u4f7f\u7528\u547d\u4ee4\u5355\u72ec\u5b89\u88c5\u6b64\u5305\u3002<\/span><\/p>\n<p style=\"text-align: center;\"><img decoding=\"async\" class=\"rich_pages wxw-img\" data-galleryid=\"\" data-ratio=\"0.2545126353790614\" data-s=\"300,640\" src=\"https:\/\/i0.wp.com\/www.biocloudservice.com\/wordpress\/wp-content\/uploads\/2024\/06\/2_RZsibn6halNMicYzSibBNlsw7JYbAw.png?w=640\" onerror=\"this.src='https:\/\/mmbiz.qpic.cn\/mmbiz_png\/zcicibWZessAxec5nH6tybm0EXxCaibxbtNniciaIvYzTOEE6sicBuWic4Rj96ZREibRZsibn6halNMicYzSibBNlsw7JYbAw\/640?wx_fmt=png'\" data-type=\"png\" data-w=\"554\" style=\"\" data-recalc-dims=\"1\"><\/p>\n<p style=\"white-space: normal;\"><span style=\"font-size: 14px;\">\u5982\u4e0a\u56fe\u6240\u793a\uff0c\u8fd9\u91cc\u5c0f\u679c\u62a5\u9519\u662f\u4e0d\u5b58\u5728spdep\u7684R\u5305\uff0c\u6211\u4f7f\u7528install.packages()\u8fdb\u884c\u5b89\u88c5\uff0c\u4e4b\u540e\u5b89\u88c5R\u5305SpatialExperiment\u7684\u7a0b\u5e8f\u53ef\u4ee5\u6b63\u5e38\u8fd0\u884c\u3002\u5b89\u88c5\u4ee3\u7801\u5982\u4e0b\uff1a<\/span><\/p>\n<\/section>\n<section class=\"code-snippet__fix code-snippet__js\">\n<ul class=\"code-snippet__line-index code-snippet__js\">\n<li><\/li>\n<li><\/li>\n<\/ul>\n<pre class=\"code-snippet__js\" data-lang=\"c\"><code><span class=\"code-snippet_outer\">#! \/usr\/bin\/Rscript<\/span><\/code><code><span class=\"code-snippet_outer\">install.packages(<span class=\"code-snippet__string\">\"spdep\"<\/span>) #\u5b89\u88c5spdep\u5305\u3002<\/span><\/code><\/pre>\n<\/section>\n<section powered-by=\"xiumi.us\">\n<p style=\"white-space: normal;\"><br \/><\/p>\n<p style=\"text-align: left;white-space: normal;\"><strong><em><span style=\"font-size: 18px;color: rgb(62, 62, 62);\">\u95ee\u98982\uff1a<\/span><\/em><\/strong><\/p>\n<p style=\"white-space: normal;\"><span style=\"font-size: 14px;\">\u5728\u8fd0\u884c\u4e0b\u9762\u4ee3\u7801\u65f6\u51fa\u73b0\u8fd9\u4e2a\u62a5\u9519\uff1a<\/span><\/p>\n<\/section>\n<section class=\"code-snippet__fix code-snippet__js\">\n<ul class=\"code-snippet__line-index code-snippet__js\">\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<\/ul>\n<pre class=\"code-snippet__js\" data-lang=\"c\"><code><span class=\"code-snippet_outer\">Error: <span class=\"code-snippet__string\">'newSpatialExperiment'<\/span> is <span class=\"code-snippet__keyword\">not<\/span> an exported object from <span class=\"code-snippet__string\">'namespace:SpatialExperiment'<\/span><\/span><\/code><code><span class=\"code-snippet_outer\">spatial_exp <- SpatialExperiment::newSpatialExperiment(<\/span><\/code><code><span class=\"code-snippet_outer\">assays = <span class=\"code-snippet__built_in\">list<\/span>(<span class=\"code-snippet__string\">\"counts\"<\/span> = as(exp_matrix, <span class=\"code-snippet__string\">\"dgCMatrix\"<\/span>)))<\/span><\/code><\/pre>\n<\/section>\n<section powered-by=\"xiumi.us\">\n<p style=\"white-space: normal;\"><span style=\"font-size: 14px;\">\u62a5\u9519\u5982\u56fe\u6240\u793a\uff1a<\/span><\/p>\n<p style=\"text-align: center;\"><img decoding=\"async\" class=\"rich_pages wxw-img\" data-galleryid=\"\" data-ratio=\"0.09747292418772563\" data-s=\"300,640\" src=\"https:\/\/i0.wp.com\/www.biocloudservice.com\/wordpress\/wp-content\/uploads\/2024\/06\/3_iagPcviaARZZHQ8Ko5GBVrAf8oHuQg.png?w=640\" onerror=\"this.src='https:\/\/mmbiz.qpic.cn\/mmbiz_png\/zcicibWZessAxec5nH6tybm0EXxCaibxbtNkZ7AFMI8xIsZlKyd6pjYALX7TMiagPcviaARZZHQ8Ko5GBVrAf8oHuQg\/640?wx_fmt=png'\" data-type=\"png\" data-w=\"554\" style=\"\" data-recalc-dims=\"1\"><\/p>\n<p style=\"white-space: normal;\"><span style=\"font-size: 14px;\">\u8fd9\u4e2a\u9519\u8bef\u4fe1\u606f\u51fa\u73b0\u5728R\u8bed\u8a00\u4e2d\uff0c\u662f\u56e0\u4e3a\u5728\u4ee3\u7801\u4e2d\u8c03\u7528\u4e86\u4e00\u4e2a\u540d\u4e3anewSpatialExperiment\u7684\u51fd\u6570\uff0c\u4f46\u662f\u8fd9\u4e2a\u51fd\u6570\u5e76\u6ca1\u6709\u4eceSpatialExperiment\u8fd9\u4e2a\u5305\u4e2d\u88ab\u6b63\u786e\u5bfc\u5165\u3002\u53ef\u80fd\u51fa\u73b0\u8fd9\u79cd\u60c5\u51b5\u7684\u539f\u56e0\u6709\u5f88\u591a\uff0c\u6bd4\u5982\uff1a<\/span><\/p>\n<p style=\"white-space: normal;\"><strong><span style=\"font-size: 14px;\">\u6ca1\u6709\u6b63\u786e\u5b89\u88c5SpatialExperiment\u5305\uff1b<\/span><\/strong><\/p>\n<p style=\"white-space: normal;\"><strong><span style=\"font-size: 14px;\">\u6ca1\u6709\u4f7f\u7528library(SpatialExperiment)\u6216require(SpatialExperiment)\u8bed\u53e5\u6765\u52a0\u8f7dSpatialExperiment\u5305\uff1b<\/span><\/strong><\/p>\n<p style=\"white-space: normal;\"><strong><span style=\"font-size: 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14px;\">\u68c0\u67e5newSpatialExperiment\u51fd\u6570\u662f\u5426\u5b58\u5728\u4e8e\u5305\u4e2d\u7684\u67d0\u4e2a\u547d\u540d\u7a7a\u95f4\u4e2d\uff0c\u5e76\u67e5\u770b\u662f\u5426\u6709\u5176\u4ed6\u7684\u5bfc\u51fa\u51fd\u6570\u53ef\u4ee5\u4ee3\u66ffnewSpatialExperiment\u3002<\/span><\/strong><\/p>\n<p style=\"white-space: normal;\"><strong><span style=\"font-size: 14px;\"><br \/><\/span><\/strong><\/p>\n<p style=\"white-space: normal;\"><span style=\"font-size: 14px;\">SpatialExperiment\u5305\u5b9a\u4e49\u4e00\u4e2a S4 \u7c7b\uff0c\u7528\u4e8e\u5b58\u50a8\u6765\u81ea\u7a7a\u95f4\u5206\u8fa8\u8f6c\u5f55\u7ec4\u5b66 ST \u5b9e\u9a8c\u7684\u6570\u636e\u3002\u7c7b\u4f3c\u5730\uff0c\u5c0f\u679c\u5728\u8fd9\u91cc\u7ed9\u5927\u5bb6\u63a8\u8350\u4e00\u4e2a\u5c0f\u5de5\u5177\uff1a<strong>MIA(multimodal-intersection-analysis)\u7b97\u6cd5\u6574\u5408\u5355\u7ec6\u80de\u53ca\u7a7a\u95f4\u8f6c\u5f55\u7ec4<\/strong><\/span><em style=\"letter-spacing: 0.578px;color: rgb(0, 0, 0);font-size: 17px;line-height: 1.59em;\"><strong>\uff08http:\/\/www.biocloudservice.com\/801\/801.php\uff09<\/strong><\/em><span style=\"font-size: 14px;\"><strong>\uff0c\u53ef\u4ee5\u5728\u7ebf\u7f51\u9875\u8fd0\u884c\uff0c\u8fd0\u884c\u901f\u5ea6\u5f88\u5feb\uff0c\u5927\u5bb6\u53ef\u4ee5\u7528\u8d77\u6765\u54e6\u3002<\/strong><\/span><\/p>\n<p style=\"white-space: normal;\"><span style=\"font-size: 14px;\">\u4ee5\u540e\u5927\u5bb6\u9047\u5230\u95ee\u9898\uff0c\u4e5f\u6b22\u8fce\u6765\u548c\u5c0f\u679c\u8ba8\u8bba\u5440\u3002<\/span><span style=\"letter-spacing: 0.578px;\"><\/span><\/p>\n<\/section>\n<\/section>\n<\/section>\n<\/section>\n<\/section>\n<\/section>\n<\/section>\n<\/section>\n<\/section>\n<\/section>\n<section data-tools=\"135\u7f16\u8f91\u5668\" data-id=\"105054\" style=\"font-size: 16px;\">\n<section style=\"margin: 10px auto;text-align: center;\">\n<section style=\"padding-top: 30px;padding-bottom: 30px;background-color: rgb(242, 246, 255);border-radius: 7px;\">\n<section style=\"display: flex;justify-content: space-evenly;align-items: center;\">\n<section data-width=\"26%\" style=\"width: 26%;max-width: 26% !important;\">\n<section style=\"padding: 7px;border-radius: 15px;box-shadow: rgba(169, 187, 223, 0.45) 4px 4px 8px, rgb(255, 255, 255) -2.5px -2.5px 5px;\">\n<section data-width=\"100%\" style=\"width: 100%;\"><img decoding=\"async\" class=\"rich_pages wxw-img\" data-ratio=\"1.005281690140845\" src=\"https:\/\/i0.wp.com\/www.biocloudservice.com\/wordpress\/wp-content\/uploads\/2024\/06\/4_0WFLKBMicbm6iawtkrNrMxpSVU9GBQ-2.png?w=640\" onerror=\"this.src='https:\/\/mmbiz.qpic.cn\/mmbiz_png\/zcicibWZessAxec5nH6tybm0EXxCaibxbtN261llpmfF6btPBTUKkibEdnRz5Y0WFLKBMicbm6iawtkrNrMxpSVU9GBQ\/640?wx_fmt=png'\" data-type=\"png\" data-w=\"568\" data-width=\"100%\" style=\"vertical-align: inherit;width: 100%;display: block;border-radius: 7px;\" title=\"\u5c0f\u4e91-\u5fae\u4fe1\u4e8c\u7ef4\u7801.png\" data-recalc-dims=\"1\"><\/section>\n<\/section>\n<\/section>\n<section data-width=\"62%\" style=\"width: 62%;max-width: 62% !important;\">\n<section style=\"display: inline-block;\">\n<section style=\"padding: 7px 15px;border-radius: 20px;box-shadow: rgba(169, 187, 223, 0.45) 6px 6px 8px inset, rgb(255, 255, 255) -2.5px -2.5px 5px inset;\">\n<section data-brushtype=\"text\" style=\"font-size: 14px;letter-spacing: 1.5px;color: rgb(111, 133, 172);\">\n<p style=\"text-indent: 0em;line-height: 1.75em;\"><span style=\"letter-spacing: 0.5px;\">\u5fae\u4fe1\u53f7 | 18502195490<\/span><\/p>\n<\/section>\n<\/section>\n<section style=\"margin-top: 12px;padding: 7px 15px;border-radius: 20px;box-shadow: rgba(169, 187, 223, 0.45) 6px 6px 8px inset, rgb(255, 255, 255) -2.5px -2.5px 5px inset;\">\n<section data-brushtype=\"text\" style=\"font-size: 14px;letter-spacing: 1.5px;color: rgb(111, 133, 172);\">\n<p style=\"text-indent: 0em;line-height: 1.75em;\"><span style=\"letter-spacing: 0.5px;\">\u77e5\u4e4e | \u751f\u4fe1\u679c<\/span><\/p>\n<\/section>\n<\/section>\n<\/section>\n<\/section>\n<\/section>\n<\/section>\n<\/section>\n<\/section>\n<section style=\"letter-spacing: 0.578px;caret-color: rgba(0, 0, 0, 0);font-size: 16px;\">\n<section>\n<section style=\"margin-top: 0.5em;\">\n<section style=\"padding: 0.5em;border-width: 1px;border-style: solid;box-shadow: rgb(226, 226, 226) 0px 16px 1px -13px;border-color: rgb(0, 150, 136);\">\n<section style=\"text-align: left;\">\n<section style=\"color: rgb(255, 129, 36);text-align: justify;\">\n<section style=\"margin-bottom: 8px;\">\n<p style=\"text-indent: 0em;line-height: 1.75em;\"><span style=\"letter-spacing: 0.5px;\">\u70b9\u51fb<strong><span style=\"color: rgb(0, 150, 136);\">\u201c\u9605\u8bfb\u539f\u6587\u201d<\/span><\/strong>\u7acb\u523b\u62e5\u6709<\/span><\/p>\n<\/section>\n<\/section>\n<\/section>\n<\/section>\n<\/section>\n<section style=\"margin-bottom: 8px;font-size: 32px;color: rgb(0, 150, 136);\">\n<p 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[…]<\/p>\n","protected":false},"author":1,"featured_media":0,"comment_status":"closed","ping_status":"","sticky":false,"template":"","format":"standard","meta":{"jetpack_post_was_ever_published":false,"_jetpack_newsletter_access":""},"categories":[1],"tags":[],"jetpack_featured_media_url":"","_links":{"self":[{"href":"http:\/\/www.biocloudservice.com\/wordpress\/index.php?rest_route=\/wp\/v2\/posts\/57841"}],"collection":[{"href":"http:\/\/www.biocloudservice.com\/wordpress\/index.php?rest_route=\/wp\/v2\/posts"}],"about":[{"href":"http:\/\/www.biocloudservice.com\/wordpress\/index.php?rest_route=\/wp\/v2\/types\/post"}],"author":[{"embeddable":true,"href":"http:\/\/www.biocloudservice.com\/wordpress\/index.php?rest_route=\/wp\/v2\/users\/1"}],"replies":[{"embeddable":true,"href":"http:\/\/www.biocloudservice.com\/wordpress\/index.php?rest_route=%2Fwp%2Fv2%2Fcomments&post=57841"}],"version-history":[{"count":1,"href":"http:\/\/www.biocloudservice.com\/wordpress\/index.php?rest_route=\/wp\/v2\/posts\/57841\/revisions"}],"predecessor-version":[{"id":57846,"href":"http:\/\/www.biocloudservice.com\/wordpress\/index.php?rest_route=\/wp\/v2\/posts\/57841\/revisions\/57846"}],"wp:attachment":[{"href":"http:\/\/www.biocloudservice.com\/wordpress\/index.php?rest_route=%2Fwp%2Fv2%2Fmedia&parent=57841"}],"wp:term":[{"taxonomy":"category","embeddable":true,"href":"http:\/\/www.biocloudservice.com\/wordpress\/index.php?rest_route=%2Fwp%2Fv2%2Fcategories&post=57841"},{"taxonomy":"post_tag","embeddable":true,"href":"http:\/\/www.biocloudservice.com\/wordpress\/index.php?rest_route=%2Fwp%2Fv2%2Ftags&post=57841"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}

{"id":57841,"date":"2024-06-16T20:42:52","date_gmt":"2024-06-16T12:42:52","guid":{"rendered":"http:\/\/www.biocloudservice.com\/wordpress\/?p=57841"},"modified":"2024-06-16T20:42:52","modified_gmt":"2024-06-16T12:42:52","slug":"r%e5%8c%85%e5%ae%89%e8%a3%85%e5%b8%b8%e8%a7%81%e6%8a%a5%e9%94%99%ef%bc%8c%e5%bf%ab%e6%9d%a5%e7%9c%8b%e7%9c%8b%e6%80%8e%e4%b9%88%e8%a7%a3%e5%86%b3","status":"publish","type":"post","link":"http:\/\/www.biocloudservice.com\/wordpress\/?p=57841","title":{"rendered":"R\u5305\u5b89\u88c5\u5e38\u89c1\u62a5\u9519\uff0c\u5feb\u6765\u770b\u770b\u600e\u4e48\u89e3\u51b3"},"content":{"rendered":"

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.code-snippet__title{color:#0e9ce5}.code-snippet__tag,.code-snippet__name,.code-snippet__attribute{color:#0e9ce5;font-weight:normal}.code-snippet__regexp,.code-snippet__link{color:#ca7d37}.code-snippet__symbol,.code-snippet__bullet{color:#d14}.code-snippet__built_in,.code-snippet__builtin-name{color:#ca7d37}.code-snippet__meta{color:#afafaf}.code-snippet__deletion{background:#fdd}.code-snippet__addition{background:#dfd}.code-snippet__emphasis{font-style:italic}.code-snippet__strong{font-weight:bold}.account_avatar{width:40px;height:40px;padding:0;}.account_info{display:-webkit-box;display:-webkit-flex;display:flex;-webkit-box-align:center;-webkit-align-items:center;padding:20px 0;align-items:center}.flex_bd{padding-left:14px;}.account_nickname{display:inline-block;vertical-align:middle;line-height:1.2;color:#576b95;font-size:14px}.account_desc{overflow:hidden;text-overflow:ellipsis;display:-webkit-box;-webkit-box-orient:vertical;-webkit-line-clamp:1;color:rgba(0,0,0,0.3);font-size:14px;line-height:1.2;padding-top:.4em}.msg_source_url{text-align:left;word-break:break-all;margin-top:20px;}.msg_source_url a{padding-right:10px;}.msg_source_url .url_text{color:#a8a8a8;}.video-desc{font-size:14px;margin-top:15px;color:#6c6c6c;}.msg_source_url{text-align:left;}.original_primary_card_tips{color:rgba(0,0,0,0.3);line-height:1.4;font-size:15px;}.weui-flex__item{margin-bottom:20px;padding:20px 16px;margin-top:16px;line-height:1.4;align-items:center;background-color:#f7f7f7;border-radius:8px;position:relative;}.original_primary_desc{color:rgba(0,0,0,0.5);font-size:14px;padding-top:4px;width:auto;overflow:hidden;text-overflow:ellipsis;}.msgBodyReplyList{border-top:1px solid #e1e1e1;margin-top:10px;}.msgBodyReplyListTop{border-top:0;}.reply_like_num{float:right;font-size:14px;color:#c7c7c7;}.msgData{margin-top:20px;color:#626262;}.msgData span{font-size:14px;padding-right:15px;}.msgData .likes{float:right;padding-right:0;}.js_text_content p{font-size:18px;}.rich_media_meta_link{font-size:15px;}blockquote {padding-left: 10px;border-left: 3px solid #dbdbdb;color: rgba(0,0,0,0.5);font-size: 15px;padding-top: 4px;margin: 1em 0;}.video_iframe{width:500px;height:400px;}.blockquote_info{color:#b5b5b5;margin-top:10px;}#copyright_logo{color:#bdbdbd;}.rich_media_meta_list{margin-bottom:10px;}.reprint{background:#efefef;border-radius:5px;padding:8px;color:#1f1f1f;}.reprint a{word-break:break-all;}.topic{color:#8e8e8e;background:#f7f7f7;border-radius:5px;padding:10px 8px;}.topic a{padding-right:5px;}.topic p{margin-bottom:5px;}\n<\/style>\n<link href=\"https:\/\/www.juyifx.cn\/config\/css\/wxArticle.css\" rel=\"stylesheet\"\/>\n<\/head><script>\nvar data={\"mp\":\"\u751f\u4fe1\u679c\",\"title\":\"R\u5305\u5b89\u88c5\u5e38\u89c1\u62a5\u9519\uff0c\u5feb\u6765\u770b\u770b\u600e\u4e48\u89e3\u51b3\",\"time\":\"2023-05-15 19:00:58\",\"timeStamp\":\"1684148458\"};\n<\/script><br \/>\n<body><\/p>\n<div class=\"rich_media\">\n<h1 class=\"rich_media_title\" id=\"activity-name\"><a href=\"http:\/\/mp.weixin.qq.com\/s?__biz=Mzg3OTg3MjQyNg==&mid=2247487596&idx=1&sn=95d4b3704a4cfa6eb6b3a5d4aee56791&chksm=cf7c80a9f80b09bf60454b04ed266efd2ddcacdab522b6468fba01d6e1671feb4eeb0dcf0174#rd\" target=\"_blank\" rel=\"noopener\">R\u5305\u5b89\u88c5\u5e38\u89c1\u62a5\u9519\uff0c\u5feb\u6765\u770b\u770b\u600e\u4e48\u89e3\u51b3<\/a><\/h1>\n<div id=\"meta_content\" class=\"rich_media_meta_list\"><span id=\"copyright_logo\" class=\"wx_tap_link js_wx_tap_highlight rich_media_meta icon_appmsg_tag appmsg_title_tag weui-wa-hotarea\">\u539f\u521b <\/span><span class=\"rich_media_meta rich_media_meta_text\">\u5c0f\u679c <\/span><span class=\"rich_media_meta rich_media_meta_nickname\" id=\"profileBt\"><a href=\"javascript:void(0);\" class=\"wx_tap_link js_wx_tap_highlight weui-wa-hotarea\" id=\"js_name\">\u751f\u4fe1\u679c <\/a><\/span><em id=\"publish_time\" class=\"rich_media_meta rich_media_meta_text\">2023-05-15 19:00:58<\/em><\/div>\n<p><content><\/p>\n<section data-role=\"outer\" label=\"edit by 135editor\">\n<section style=\"letter-spacing: 0.578px;font-size: 16px;\">\n<section>\n<section>\n<section>\n<section>\n<section>\n<section data-width=\"100%\" style=\"width: 100%;flex: 0 0 100%;opacity: 1;\">\n<section style=\"line-height: 1.8;\">\n<section>\n<section>\n<section style=\"margin-top: 10px;margin-bottom: 20px;display: flex;flex-flow: row nowrap;text-align: center;justify-content: center;\">\n<section style=\"display: inline-block;width: 100%;vertical-align: top;border-style: solid;border-width: 1px;border-color: rgb(67, 67, 67);flex: 0 0 auto;align-self: flex-start;height: auto;box-shadow: rgb(255, 219, 118) 6px 6px 0px;background-color: rgb(255, 255, 255);\">\n<section style=\"text-align: left;justify-content: flex-start;display: flex;flex-flow: row nowrap;\">\n<section style=\"display: inline-block;width: 70%;vertical-align: top;align-self: flex-start;flex: 0 0 auto;height: auto;max-width: 70% !important;\">\n<section style=\"margin-top: 10px;\">\n<section style=\"text-align: center;\">\n<p style=\"text-indent: 0em;line-height: 1.75em;\"><span style=\"letter-spacing: 0.5px;\"><strong><span style=\"font-size: 15px;\">\u751f\u4fe1\u4ebaR\u8bed\u8a00\u5b66\u4e60\u5fc5\u5907<\/span><\/strong><\/span><\/p>\n<p style=\"text-indent: 0em;line-height: 1.75em;\"><span style=\"letter-spacing: 0.5px;\"><strong><span style=\"font-size: 15px;\">\u7acb\u523b\u62e5\u6709\u4e00\u4e2aRstudio\u8d26\u53f7<\/span><\/strong><\/span><\/p>\n<p style=\"text-indent: 0em;line-height: 1.75em;\"><span style=\"letter-spacing: 0.5px;\"><strong><span style=\"font-size: 15px;\">\u5f00\u542f\u5347\u7ea7\u6a21\u5f0f\u5427<\/span><\/strong><\/span><\/p>\n<p style=\"text-indent: 0em;line-height: 1.75em;\"><span style=\"color: rgb(255, 129, 36);font-size: 12px;letter-spacing: 0.5px;\">\uff0856\u7ebf\u7a0b\uff0c256G\u5185\u5b58\uff0c\u4e2a\u4eba\u5b58\u50a81T\uff09<\/span><\/p>\n<\/section>\n<\/section>\n<\/section>\n<section style=\"display: inline-block;width: 30%;vertical-align: top;align-self: flex-start;flex: 0 0 auto;height: auto;max-width: 30% !important;\">\n<section style=\"margin-top: 10px;margin-bottom: 10px;text-align: center;line-height: 0;\">\n<section style=\"vertical-align: middle;display: inline-block;line-height: 0;\">\n<p style=\"text-indent: 0em;line-height: 1.75em;\"><img decoding=\"async\" class=\"rich_pages wxw-img\" data-cropselx1=\"0\" data-cropselx2=\"162\" data-cropsely1=\"0\" data-cropsely2=\"162\" data-ratio=\"1\" src=\"https:\/\/i0.wp.com\/www.biocloudservice.com\/wordpress\/wp-content\/uploads\/2024\/06\/1_ib2l1ye6HNIkwTG696C2pf9yAtdeGA-44.png?w=640\" onerror=\"this.src='https:\/\/mmbiz.qpic.cn\/mmbiz_png\/zcicibWZessAyB69UyXDLG0wQcISNwmL6DlpIKVBnCSOXHTWJhLcxic2qtibaib2l1ye6HNIkwTG696C2pf9yAtdeGA\/640?wx_fmt=png'\" data-type=\"jpeg\" data-w=\"400\" style=\"height: 111px;vertical-align: middle;width: 111px;\" data-recalc-dims=\"1\" \/><\/p>\n<\/section>\n<\/section>\n<\/section>\n<\/section>\n<\/section>\n<\/section>\n<\/section>\n<\/section>\n<\/section>\n<\/section>\n<section data-role=\"list\">\n<ul class=\"list-paddingleft-1\" style=\"padding-left: 30px;width: 100%;list-style-position: outside;\">\n<li>\n<p style=\"text-align:justify;text-indent: 0em;line-height: 1.75em;\"><span style=\"font-size: 14px;letter-spacing: 0.5px;line-height: 2em;\"><span style=\"font-family: \u5b8b\u4f53;\"><span style=\"caret-color: rgb(255, 0, 0);font-family: mp-quote, -apple-system-font, BlinkMacSystemFont, "Helvetica Neue", "PingFang SC", "Hiragino Sans GB", "Microsoft YaHei UI", "Microsoft YaHei", Arial, sans-serif;\">\u5c0f\u679c\u5982\u671f\u800c\u81f3\uff0c\u5c0f\u4f19\u4f34\u4eec\u6709\u6ca1\u6709\u60f3\u6211\u5462\u3002\u5c0f\u679c\u5728\u5b89\u88c5R\u5305SpatialExperiment\u65f6\u9047\u5230\u4e86\u4e00\u4e9b\u62a5\u9519\uff0cR\u5305\u5b89\u88c5\u62a5\u9519\u662f\u4e00\u4ef6\u5f88\u5934\u75db\u7684\u4e8b\u60c5\uff0c\u56e0\u4e3a\u5305\u5b89\u88c5\u4e0d\u4e86\uff0c\u540e\u9762\u7684\u5206\u6790\u90fd\u65e0\u6cd5\u8fdb\u884c\u4e86\u3002\u5728\u4f7f\u7528R\u5b89\u88c5\u5305\u65f6\u5927\u5bb6\u6216\u591a\u6216\u5c11\u90fd\u4f1a\u9047\u5230\u62a5\u9519\uff0c\u90a3\u73b0\u5728\u5c0f\u679c\u5c31\u5206\u4eab\u7ed9\u5927\u5bb6R\u5305\u5b89\u88c5\u7684\u5e38\u7528\u62a5\u9519\u4ee5\u53ca\u89e3\u51b3\u529e\u6cd5\u3002<\/span><\/span><\/span><\/p>\n<p style=\"text-align:justify;text-indent: 0em;line-height: 1.75em;\"><br \/><\/p>\n<\/li>\n<\/ul>\n<section style=\"height: 0px;overflow: hidden;\"><br \/><\/section>\n<section style=\"height: 0px;overflow: hidden;\"><br \/><\/section>\n<section>\n<section style=\"font-size: 16px;\">\n<section powered-by=\"xiumi.us\">\n<p style=\"white-space: normal;\"><span style=\"font-size: 14px;\">\u5c0f\u679c\u5728\u672c\u5730\u5b89\u88c5\u6b64\u5305\u6bd4\u8f83\u6162\uff0c\u56e0\u6b64\u5728\u670d\u52a1\u5668\u4e0a\u8fd0\u884c\u5b89\u88c5R\u5305\u7684\u7a0b\u5e8f\u3002<\/span><\/p>\n<p style=\"white-space: normal;\"><span style=\"font-size: 14px;\">\u5b89\u88c5\u4ee3\u7801\uff1a<\/span><\/p>\n<\/section>\n<section class=\"code-snippet__fix code-snippet__js\">\n<ul class=\"code-snippet__line-index code-snippet__js\">\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<\/ul>\n<pre class=\"code-snippet__js\" data-lang=\"c\"><code><span class=\"code-snippet_outer\">#! \/usr\/bin\/Rscript<\/span><\/code><code><span class=\"code-snippet_outer\">#\u6b64\u4e3ashebang line\uff0c\u7528\u4e8e\u6307\u5b9a\u811a\u672c\u89e3\u91ca\u5668\u7684\u8def\u5f84\u3002\u5728\u8fd9\u4e2a\u4f8b\u5b50\u4e2d\uff0c\u6307\u5b9a\u4e86Rscript\u7684\u8def\u5f84\u4e3a\/usr\/bin\/Rscript\u3002<\/span><\/code><code><span class=\"code-snippet_outer\">#\u5b89\u88c5<\/span><\/code><code><span class=\"code-snippet_outer\"><span class=\"code-snippet__keyword\">if<\/span> (!require(<span class=\"code-snippet__string\">\"BiocManager\"<\/span>, quietly = TRUE))<\/span><\/code><code><span class=\"code-snippet_outer\">install.packages(<span class=\"code-snippet__string\">\"BiocManager\"<\/span>)<\/span><\/code><code><span class=\"code-snippet_outer\">BiocManager::install(<span class=\"code-snippet__string\">\"SpatialExperiment\"<\/span>)<\/span><\/code><\/pre>\n<\/section>\n<section powered-by=\"xiumi.us\">\n<p style=\"white-space: normal;\"><br \/><\/p>\n<p style=\"text-align: left;white-space: normal;\"><strong><em><span style=\"font-size: 18px;color: rgb(62, 62, 62);\">\u95ee\u98981\uff1a<\/span><\/em><\/strong><\/p>\n<p style=\"white-space: normal;\"><span style=\"font-size: 14px;\">\u5728\u5b89\u88c5\u8fc7\u7a0b\u4e2d\u9047\u5230\u4e86there is no package called \u2018 \u2019 \u8fd9\u7c7b\u578b\u7684\u62a5\u9519\uff0c\u4e3b\u8981\u95ee\u9898\u662f\u8bf4\u4e0d\u5b58\u5728\u67d0\u5305\uff0c\u9047\u5230\u8fd9\u79cd\u62a5\u9519\uff0c\u89e3\u51b3\u529e\u6cd5\u662f\uff1a\u4f7f\u7528\u547d\u4ee4\u5355\u72ec\u5b89\u88c5\u6b64\u5305\u3002<\/span><\/p>\n<p style=\"text-align: center;\"><img decoding=\"async\" class=\"rich_pages wxw-img\" data-galleryid=\"\" data-ratio=\"0.2545126353790614\" data-s=\"300,640\" src=\"https:\/\/i0.wp.com\/www.biocloudservice.com\/wordpress\/wp-content\/uploads\/2024\/06\/2_RZsibn6halNMicYzSibBNlsw7JYbAw.png?w=640\" onerror=\"this.src='https:\/\/mmbiz.qpic.cn\/mmbiz_png\/zcicibWZessAxec5nH6tybm0EXxCaibxbtNniciaIvYzTOEE6sicBuWic4Rj96ZREibRZsibn6halNMicYzSibBNlsw7JYbAw\/640?wx_fmt=png'\" data-type=\"png\" data-w=\"554\" style=\"\" data-recalc-dims=\"1\"><\/p>\n<p style=\"white-space: normal;\"><span style=\"font-size: 14px;\">\u5982\u4e0a\u56fe\u6240\u793a\uff0c\u8fd9\u91cc\u5c0f\u679c\u62a5\u9519\u662f\u4e0d\u5b58\u5728spdep\u7684R\u5305\uff0c\u6211\u4f7f\u7528install.packages()\u8fdb\u884c\u5b89\u88c5\uff0c\u4e4b\u540e\u5b89\u88c5R\u5305SpatialExperiment\u7684\u7a0b\u5e8f\u53ef\u4ee5\u6b63\u5e38\u8fd0\u884c\u3002\u5b89\u88c5\u4ee3\u7801\u5982\u4e0b\uff1a<\/span><\/p>\n<\/section>\n<section class=\"code-snippet__fix code-snippet__js\">\n<ul class=\"code-snippet__line-index code-snippet__js\">\n<li><\/li>\n<li><\/li>\n<\/ul>\n<pre class=\"code-snippet__js\" data-lang=\"c\"><code><span class=\"code-snippet_outer\">#! \/usr\/bin\/Rscript<\/span><\/code><code><span class=\"code-snippet_outer\">install.packages(<span class=\"code-snippet__string\">\"spdep\"<\/span>) #\u5b89\u88c5spdep\u5305\u3002<\/span><\/code><\/pre>\n<\/section>\n<section powered-by=\"xiumi.us\">\n<p style=\"white-space: normal;\"><br \/><\/p>\n<p style=\"text-align: left;white-space: normal;\"><strong><em><span style=\"font-size: 18px;color: rgb(62, 62, 62);\">\u95ee\u98982\uff1a<\/span><\/em><\/strong><\/p>\n<p style=\"white-space: normal;\"><span style=\"font-size: 14px;\">\u5728\u8fd0\u884c\u4e0b\u9762\u4ee3\u7801\u65f6\u51fa\u73b0\u8fd9\u4e2a\u62a5\u9519\uff1a<\/span><\/p>\n<\/section>\n<section class=\"code-snippet__fix code-snippet__js\">\n<ul class=\"code-snippet__line-index code-snippet__js\">\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<\/ul>\n<pre class=\"code-snippet__js\" data-lang=\"c\"><code><span class=\"code-snippet_outer\">Error: <span class=\"code-snippet__string\">'newSpatialExperiment'<\/span> is <span class=\"code-snippet__keyword\">not<\/span> an exported object from <span class=\"code-snippet__string\">'namespace:SpatialExperiment'<\/span><\/span><\/code><code><span class=\"code-snippet_outer\">spatial_exp <- SpatialExperiment::newSpatialExperiment(<\/span><\/code><code><span class=\"code-snippet_outer\">assays = <span class=\"code-snippet__built_in\">list<\/span>(<span class=\"code-snippet__string\">\"counts\"<\/span> = as(exp_matrix, <span class=\"code-snippet__string\">\"dgCMatrix\"<\/span>)))<\/span><\/code><\/pre>\n<\/section>\n<section powered-by=\"xiumi.us\">\n<p style=\"white-space: normal;\"><span style=\"font-size: 14px;\">\u62a5\u9519\u5982\u56fe\u6240\u793a\uff1a<\/span><\/p>\n<p style=\"text-align: center;\"><img decoding=\"async\" class=\"rich_pages wxw-img\" data-galleryid=\"\" data-ratio=\"0.09747292418772563\" data-s=\"300,640\" src=\"https:\/\/i0.wp.com\/www.biocloudservice.com\/wordpress\/wp-content\/uploads\/2024\/06\/3_iagPcviaARZZHQ8Ko5GBVrAf8oHuQg.png?w=640\" onerror=\"this.src='https:\/\/mmbiz.qpic.cn\/mmbiz_png\/zcicibWZessAxec5nH6tybm0EXxCaibxbtNkZ7AFMI8xIsZlKyd6pjYALX7TMiagPcviaARZZHQ8Ko5GBVrAf8oHuQg\/640?wx_fmt=png'\" data-type=\"png\" data-w=\"554\" style=\"\" data-recalc-dims=\"1\"><\/p>\n<p style=\"white-space: normal;\"><span style=\"font-size: 14px;\">\u8fd9\u4e2a\u9519\u8bef\u4fe1\u606f\u51fa\u73b0\u5728R\u8bed\u8a00\u4e2d\uff0c\u662f\u56e0\u4e3a\u5728\u4ee3\u7801\u4e2d\u8c03\u7528\u4e86\u4e00\u4e2a\u540d\u4e3anewSpatialExperiment\u7684\u51fd\u6570\uff0c\u4f46\u662f\u8fd9\u4e2a\u51fd\u6570\u5e76\u6ca1\u6709\u4eceSpatialExperiment\u8fd9\u4e2a\u5305\u4e2d\u88ab\u6b63\u786e\u5bfc\u5165\u3002\u53ef\u80fd\u51fa\u73b0\u8fd9\u79cd\u60c5\u51b5\u7684\u539f\u56e0\u6709\u5f88\u591a\uff0c\u6bd4\u5982\uff1a<\/span><\/p>\n<p style=\"white-space: normal;\"><strong><span style=\"font-size: 14px;\">\u6ca1\u6709\u6b63\u786e\u5b89\u88c5SpatialExperiment\u5305\uff1b<\/span><\/strong><\/p>\n<p style=\"white-space: normal;\"><strong><span style=\"font-size: 14px;\">\u6ca1\u6709\u4f7f\u7528library(SpatialExperiment)\u6216require(SpatialExperiment)\u8bed\u53e5\u6765\u52a0\u8f7dSpatialExperiment\u5305\uff1b<\/span><\/strong><\/p>\n<p style=\"white-space: normal;\"><strong><span style=\"font-size: 14px;\">newSpatialExperiment\u51fd\u6570\u5e76\u6ca1\u6709\u88ab\u6b63\u786e\u5730\u5b9a\u4e49\u548c\u5bfc\u51fa<\/span><span style=\"font-size: 14px;letter-spacing: 0.578px;\">\u3002<\/span><\/strong><\/p>\n<p style=\"white-space: normal;\"><span style=\"font-size: 14px;letter-spacing: 0.578px;\"><br \/><\/span><\/p>\n<p style=\"white-space: normal;\"><span style=\"font-size: 14px;\">\u5bf9\u4e8e\u8fd9\u7c7b\u95ee\u9898\uff0c\u89e3\u51b3\u65b9\u6cd5\u5305\u62ec\uff1a<\/span><\/p>\n<p style=\"white-space: normal;\"><strong><span style=\"font-size: 14px;\">\u786e\u4fdd\u5df2\u7ecf\u6b63\u786e\u5b89\u88c5SpatialExperiment\u5305\uff0c\u5e76\u5c1d\u8bd5\u91cd\u65b0\u5b89\u88c5\uff1b<\/span><\/strong><\/p>\n<p style=\"white-space: normal;\"><strong><span style=\"font-size: 14px;\">\u4f7f\u7528library(SpatialExperiment)\u6216require(SpatialExperiment)\u8bed\u53e5\u6765\u52a0\u8f7d\u5305\uff1b<\/span><\/strong><\/p>\n<p style=\"white-space: normal;\"><strong><span style=\"font-size: 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