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14px;\">\u5728\u5206\u6790\u4e4b\u524d\u5c0f\u679c\u4e3a\u5927\u5bb6\u7b80\u5355\u4ecb\u7ecd\u4e00\u4e0bGSVA\u5206\u6790\uff0cGSVA\u88ab\u79f0\u4e3a\u57fa\u56e0\u96c6\u53d8\u5f02\u5206\u6790\uff0c\u662f\u4e00\u79cd\u975e\u53c2\u6570\u7684\u65e0\u76d1\u7763\u5206\u6790\u5206\u6790\uff0c\u53ef\u4ee5\u8ba1\u7b97\u6bcf\u4e2a\u6837\u672c\u4e2d\u7279\u5b9a\u57fa\u56e0\u96c6\u7684\u5bcc\u96c6\u5206\u6570\uff1b\u5728\u4e86\u89e3\u4e86GSVA\u5206\u6790\u7684\u57fa\u672c\u539f\u7406\u4e4b\u540e\uff0c\u5c0f\u4f19\u4f34\u4eec\u662f\u4e0d\u662f\u4f1a\u4ea7\u751f\u7591\u95ee\u8be5\u5982\u4f55\u8fdb\u884c\u5206\u6790\uff1f\u8be5\u5206\u6790\u5176\u5b9e\u5f88\u7b80\u5355\uff0c\u53ea\u9700\u8981\u51c6\u5907\u57fa\u56e0\u8868\u8fbe\u77e9\u9635\u548c\u57fa\u56e0\u96c6list\u8fd9\u4e24\u4e2a\u6587\u4ef6\u3002<\/span><\/p>\n<p style=\"white-space: normal;\"><strong><span style=\"font-size: 14px;\">\u5982\u4f55\u4e0b\u8f7d\u57fa\u56e0\u96c6list\u6587\u4ef6?<\/span><\/strong><\/p>\n<p style=\"white-space: normal;text-align: left;\"><span style=\"font-size: 14px;\">\u5728GSEA\u5b98\u7f51MSigDb\u4e0b\u8f7dgmt\u683c\u5f0f\u57fa\u56e0\u901a\u8def\u6587\u4ef6\uff0c\u7f51\u5740\uff1a<\/span><span style=\"font-size: 14px;text-decoration: underline;\"><strong>https:\/\/www.gsea-msigdb.org\/gsea\/msigdb\/<\/strong><\/span><span style=\"font-size: 14px;\">\uff0c\u9700\u8981\u6ce8\u610f\u7684\u662f\u4e0b\u8f7d\u6570\u636e\u65f6\u8981\u8fdb\u884c\u90ae\u7bb1\u6ce8\u518c\u624d\u80fd\u591f\u4e0b\u8f7d\u5965\u3002<\/span><\/p>\n<p style=\"text-align: center;\"><img decoding=\"async\" class=\"rich_pages wxw-img\" data-galleryid=\"\" data-ratio=\"0.40252707581227437\" data-s=\"300,640\" src=\"https:\/\/i0.wp.com\/www.biocloudservice.com\/wordpress\/wp-content\/uploads\/2024\/06\/2_akgh2KynEsibw531PfTRKetficZiag.png?w=640\" onerror=\"this.src='https:\/\/mmbiz.qpic.cn\/sz_mmbiz_png\/zcicibWZessAyL6u7wJswOp8vtpzGp6vYn87Cr1XydoSC9icpd2J5RiaMmGN0IXakgh2KynEsibw531PfTRKetficZiag\/640?wx_fmt=png'\" data-type=\"png\" data-w=\"554\" style=\"\" data-recalc-dims=\"1\"><\/p>\n<p style=\"white-space: normal;\"><span style=\"font-size: 14px;\"> <\/span><\/p>\n<p style=\"text-align: center;\"><img decoding=\"async\" class=\"rich_pages wxw-img\" data-galleryid=\"\" data-ratio=\"0.27256317689530685\" data-s=\"300,640\" src=\"https:\/\/i0.wp.com\/www.biocloudservice.com\/wordpress\/wp-content\/uploads\/2024\/06\/3_2wFjGoSpEFxJIO15Uby11d3O90bZtg.png?w=640\" onerror=\"this.src='https:\/\/mmbiz.qpic.cn\/sz_mmbiz_png\/zcicibWZessAyL6u7wJswOp8vtpzGp6vYnZEJXlw1bP9Nfibfa6yRviakuG42wFjGoSpEFxJIO15Uby11d3O90bZtg\/640?wx_fmt=png'\" data-type=\"png\" data-w=\"554\" style=\"\" data-recalc-dims=\"1\"><\/p>\n<p style=\"text-align: center;white-space: normal;\"><strong><em><span style=\"font-size: 20px;\">\u51c6\u5907\u9700\u8981\u7684R\u5305<\/span><\/em><\/strong><\/p>\n<\/section>\n<section class=\"code-snippet__fix code-snippet__js\">\n<ul class=\"code-snippet__line-index code-snippet__js\">\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<\/ul>\n<pre class=\"code-snippet__js\" data-lang=\"c\"><code><span class=\"code-snippet_outer\">#\u5b89\u88c5\u9700\u8981\u7684R\u5305<\/span><\/code><code><span class=\"code-snippet_outer\">BiocManager::install(<span class=\"code-snippet__string\">'limma'<\/span>)<\/span><\/code><code><span class=\"code-snippet_outer\">BiocManager::install(<span class=\"code-snippet__string\">\"GSEABase\"<\/span>)<\/span><\/code><code><span class=\"code-snippet_outer\">BiocManager::install(<span class=\"code-snippet__string\">\"GSVA\"<\/span>, version = <span class=\"code-snippet__string\">\"3.14\"<\/span>)<\/span><\/code><code><span class=\"code-snippet_outer\">install.packages(<span class=\"code-snippet__string\">\"ggprism\"<\/span>)<\/span><\/code><code><span class=\"code-snippet_outer\">install.packages(<span class=\"code-snippet__string\">\"ggplot2\"<\/span>)<\/span><\/code><code><span class=\"code-snippet_outer\">install.packages(<span class=\"code-snippet__string\">\"dplyr\"<\/span>)<\/span><\/code><code><span class=\"code-snippet_outer\">install.packages(<span class=\"code-snippet__string\">\"stringr\"<\/span>)<\/span><\/code><code><span class=\"code-snippet_outer\">instll.packages(<span class=\"code-snippet__string\">\"readxl\"<\/span>)<\/span><\/code><code><span class=\"code-snippet_outer\">#\u52a0\u8f7d\u9700\u8981\u7684R\u5305<\/span><\/code><code><span class=\"code-snippet_outer\">library(readxl)<\/span><\/code><code><span class=\"code-snippet_outer\">library(dplyr)<\/span><\/code><code><span class=\"code-snippet_outer\">library(GSEABase)<\/span><\/code><code><span class=\"code-snippet_outer\">library(GSVA)<\/span><\/code><code><span class=\"code-snippet_outer\">library(limma)<\/span><\/code><code><span class=\"code-snippet_outer\">library(stringr)<\/span><\/code><code><span class=\"code-snippet_outer\">library(ggprism)<\/span><\/code><code><span class=\"code-snippet_outer\">library(ggplot2)<\/span><\/code><\/pre>\n<\/section>\n<section powered-by=\"xiumi.us\">\n<p style=\"margin-bottom: 0px;font-size: 16px;letter-spacing: 0.578px;text-wrap: wrap;text-align: center;\"><strong><em><span style=\"font-size: 20px;\">\u7ed3\u679c\u6587\u4ef6<\/span><\/em><\/strong><\/p>\n<p style=\"margin-bottom: 0px;font-size: 16px;letter-spacing: 0.578px;text-wrap: wrap;text-align: left;\"><strong><em><span style=\"color: rgb(62, 62, 62);\">1. gsva_bar.pdf<\/span><\/em><\/strong><\/p>\n<p style=\"margin-bottom: 0px;font-size: 16px;letter-spacing: 0.578px;text-wrap: wrap;\"><span style=\"font-size: 14px;\">\u8be5\u7ed3\u679c\u56fe\u7247\u4e3a\u7ed8\u5236\u7684GSVA\u5f97\u5206\u5dee\u5f02\u901a\u8def\u6761\u5f62\u56fe<\/span><\/p>\n<p style=\"margin-bottom: 0px;font-size: 16px;letter-spacing: 0.578px;text-wrap: wrap;\"><span style=\"font-size: 14px;\"> <\/span><\/p>\n<p style=\"margin-bottom: 0px;font-size: 16px;letter-spacing: 0.578px;text-wrap: wrap;text-align: center;\"><img decoding=\"async\" class=\"rich_pages wxw-img\" data-galleryid=\"\" data-ratio=\"1.0101522842639594\" data-s=\"300,640\" src=\"https:\/\/i0.wp.com\/www.biocloudservice.com\/wordpress\/wp-content\/uploads\/2024\/06\/4_ZodFgicSrmXHD8ODDFjcFqicrX2wAA.png?w=640\" onerror=\"this.src='https:\/\/mmbiz.qpic.cn\/sz_mmbiz_png\/zcicibWZessAyL6u7wJswOp8vtpzGp6vYnXS1shpYozeLR13PtcScO3lsWc7ZodFgicSrmXHD8ODDFjcFqicrX2wAA\/640?wx_fmt=png'\" data-type=\"png\" data-w=\"394\" data-recalc-dims=\"1\"><\/p>\n<p style=\"margin-bottom: 0px;letter-spacing: 0.578px;text-wrap: wrap;font-size: 16px;\"><span style=\"font-size: 14px;\">\u5982\u679c\u9700\u8981\u5b8c\u6574\u7684\u4ee3\u7801\u53ef\u4ee5\u70b9\u51fb\u4ed8\u8d39\u83b7\u53d6\u54e6!\u4eca\u5929\u5c0f\u679c\u7684\u5206\u4eab\u5c31\u5230\u8fd9\u91cc\uff0c\u5982\u679c\u5c0f\u4f19\u4f34\u6709\u5176\u4ed6\u6570\u636e\u5206\u6790\u9700\u6c42\uff0c\u53ef\u4ee5\u5c1d\u8bd5\u672c\u516c\u53f8\u65b0\u5f00\u53d1\u7684\u751f\u4fe1\u5206\u6790\u5c0f\u5de5\u5177\u4e91\u5e73\u53f0\uff0c\u5b63\u4ee3\u7801\u5b8c\u6210\u5206\u6790\uff0c\u975e\u5e38\u65b9\u4fbf\u5965!<\/span><\/p>\n<p style=\"margin-bottom: 0px;letter-spacing: 0.578px;text-wrap: wrap;font-size: 16px;\"><span style=\"font-size: 14px;color: rgb(217, 33, 66);\">\u4e91\u5e73\u53f0\u7f51\u5740\u4e3a: http:\/\/www.biocloudservice.com\/home.html\uff0c\u5305\u62ec\u6839\u636egsva\u7ed3\u679c\u7ed8\u5236\u7ed8\u5236\u4e24\u57fa\u56e0\u76f8\u5173\u6027 \u56fe(http:\/\/www.biocloudservice.com\/405\/405.php),\u6839 \u636e gsva \u7b5b \u9009\u9ad8\u76f8\u5173\u6027\u57fa\u56e0(http:\/\/www.biocloudservice.com\/404\/404.php)\u7b49\u5c0f\u5de5\u5177\uff0c\u6b22\u8fce\u5c0f\u4f19\u4f34\u4eec\u6765\u5c1d\u8bd5\u54df!<\/span><\/p>\n<p style=\"margin-bottom: 0px;letter-spacing: 0.578px;text-wrap: wrap;font-size: 16px;\"><span style=\"font-size: 14px;color: rgb(217, 33, 66);\"><br \/><\/span><\/p>\n<p style=\"margin-bottom: 0px;letter-spacing: 0.578px;text-wrap: wrap;font-size: 16px;text-align: center;\"><span style=\"font-size: 14px;\"><strong>\uff08\u626b\u7801\u9886\u53d6<span style=\"color: rgb(62, 62, 62);font-family: "Noto Sans CJK SC", "Helvetica Neue", Helvetica, "Hiragino Sans GB", "Microsoft YaHei", "Apple Color Emoji", "Segoe UI Symbol", Arial, sans-serif;letter-spacing: 0.476px;background-color: rgb(255, 255, 255);\">\u6574\u7406\u597d\u7684\u8f93\u5165\u6587\u4ef6\uff0c\u4ee3\u7801\u6587\u4ef6\u53ca\u793a\u4f8b\u7ed3\u679c<\/span>\uff09<\/strong><\/span><\/p>\n<p class=\"js_pay_preview_filter\"><mp-pay-preview-filter data-offset=\"24\"><\/mp-pay-preview-filter><\/p>\n<p><\/content>\n<\/div>\n<p><\/body><br \/>\n<\/html><\/p>\n","protected":false},"excerpt":{"rendered":"<p>\u300c\u4ed8\u8d39\u300d\u3010\u4ee3\u7801-4\u3011\u590d\u73b0nature\u7ea7\u522b\u7684GSVA+limma\u5dee\u5f02\u901a\u8def\u6761\u5f62\u56fe \u539f\u521b \u5c0f\u679c […]<\/p>\n","protected":false},"author":1,"featured_media":0,"comment_status":"closed","ping_status":"","sticky":false,"template":"","format":"standard","meta":{"jetpack_post_was_ever_published":false,"_jetpack_newsletter_access":""},"categories":[1],"tags":[],"jetpack_featured_media_url":"","_links":{"self":[{"href":"http:\/\/www.biocloudservice.com\/wordpress\/index.php?rest_route=\/wp\/v2\/posts\/57847"}],"collection":[{"href":"http:\/\/www.biocloudservice.com\/wordpress\/index.php?rest_route=\/wp\/v2\/posts"}],"about":[{"href":"http:\/\/www.biocloudservice.com\/wordpress\/index.php?rest_route=\/wp\/v2\/types\/post"}],"author":[{"embeddable":true,"href":"http:\/\/www.biocloudservice.com\/wordpress\/index.php?rest_route=\/wp\/v2\/users\/1"}],"replies":[{"embeddable":true,"href":"http:\/\/www.biocloudservice.com\/wordpress\/index.php?rest_route=%2Fwp%2Fv2%2Fcomments&post=57847"}],"version-history":[{"count":1,"href":"http:\/\/www.biocloudservice.com\/wordpress\/index.php?rest_route=\/wp\/v2\/posts\/57847\/revisions"}],"predecessor-version":[{"id":57852,"href":"http:\/\/www.biocloudservice.com\/wordpress\/index.php?rest_route=\/wp\/v2\/posts\/57847\/revisions\/57852"}],"wp:attachment":[{"href":"http:\/\/www.biocloudservice.com\/wordpress\/index.php?rest_route=%2Fwp%2Fv2%2Fmedia&parent=57847"}],"wp:term":[{"taxonomy":"category","embeddable":true,"href":"http:\/\/www.biocloudservice.com\/wordpress\/index.php?rest_route=%2Fwp%2Fv2%2Fcategories&post=57847"},{"taxonomy":"post_tag","embeddable":true,"href":"http:\/\/www.biocloudservice.com\/wordpress\/index.php?rest_route=%2Fwp%2Fv2%2Ftags&post=57847"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}

{"id":57847,"date":"2024-06-16T20:44:02","date_gmt":"2024-06-16T12:44:02","guid":{"rendered":"http:\/\/www.biocloudservice.com\/wordpress\/?p=57847"},"modified":"2024-06-16T20:44:02","modified_gmt":"2024-06-16T12:44:02","slug":"%e3%80%8c%e4%bb%98%e8%b4%b9%e3%80%8d%e3%80%90%e4%bb%a3%e7%a0%81-4%e3%80%91%e5%a4%8d%e7%8e%b0nature%e7%ba%a7%e5%88%ab%e7%9a%84gsvalimma%e5%b7%ae%e5%bc%82%e9%80%9a%e8%b7%af%e6%9d%a1%e5%bd%a2%e5%9b%be","status":"publish","type":"post","link":"http:\/\/www.biocloudservice.com\/wordpress\/?p=57847","title":{"rendered":"\u300c\u4ed8\u8d39\u300d\u3010\u4ee3\u7801-4\u3011\u590d\u73b0nature\u7ea7\u522b\u7684GSVA+limma\u5dee\u5f02\u901a\u8def\u6761\u5f62\u56fe"},"content":{"rendered":"

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href=\"https:\/\/mp.weixin.qq.com\/mp\/appmsgalbum?__biz=Mzg3OTg3MjQyNg==&action=getalbum&album_id=2664545260517294084#wechat_redirect\" title=\"\u751f\u4fe1\u5b9e\u64cd\" target=\"_blank\" rel=\"noopener\">#\u751f\u4fe1\u5b9e\u64cd<\/a><a href=\"https:\/\/mp.weixin.qq.com\/mp\/appmsgalbum?__biz=Mzg3OTg3MjQyNg==&action=getalbum&album_id=2812010014583390210#wechat_redirect\" title=\"R\u4ee3\u7801\" target=\"_blank\" rel=\"noopener\">#R\u4ee3\u7801<\/a><\/p>\n<\/div>\n<section style=\"font-size: 16px;\">\n<section style=\"\" powered-by=\"xiumi.us\">\n<section style=\"text-align: left;\">\n<section>\n<section powered-by=\"xiumi.us\">\n<section style=\"letter-spacing: 0.578px;\">\n<section>\n<section style=\"width: 100%;flex: 0 0 100%;\" powered-by=\"xiumi.us\">\n<section style=\"opacity: 1;width: 100%;\">\n<section powered-by=\"xiumi.us\">\n<section style=\"line-height: 1.8;\">\n<section style=\"margin-top: 10px;margin-bottom: 20px;width: 100%;\" powered-by=\"xiumi.us\">\n<section 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0em;line-height: 1.75em;\"><span style=\"letter-spacing: 0.5px;\"><strong><span style=\"font-size: 15px;\">\u751f\u4fe1\u4ebaR\u8bed\u8a00\u5b66\u4e60\u5fc5\u5907<\/span><\/strong><\/span><\/p>\n<p style=\"text-indent: 0em;line-height: 1.75em;\"><span style=\"letter-spacing: 0.5px;\"><strong><span style=\"font-size: 15px;\">\u7acb\u523b\u62e5\u6709\u4e00\u4e2aRstudio\u8d26\u53f7<\/span><\/strong><\/span><\/p>\n<p style=\"text-indent: 0em;line-height: 1.75em;\"><span style=\"letter-spacing: 0.5px;\"><strong><span style=\"font-size: 15px;\">\u5f00\u542f\u5347\u7ea7\u6a21\u5f0f\u5427<\/span><\/strong><\/span><\/p>\n<p style=\"text-indent: 0em;line-height: 1.75em;\"><span style=\"color: rgb(255, 129, 36);font-size: 12px;letter-spacing: 0.5px;\">\uff0856\u7ebf\u7a0b\uff0c256G\u5185\u5b58\uff0c\u4e2a\u4eba\u5b58\u50a81T\uff09<\/span><\/p>\n<\/section>\n<\/section>\n<\/section>\n<\/section>\n<section style=\"display: inline-block;vertical-align: top;width: 29.9652%;align-self: 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style=\"vertical-align: middle;width: 100%;\" data-recalc-dims=\"1\"><\/section>\n<\/section>\n<section style=\"line-height: 1.75em;text-indent: 0em;\">\n<section style=\"vertical-align: middle;display: inline-block;line-height: 0;height: auto;width: 111px;\"><br \/><\/section>\n<\/section>\n<\/section>\n<\/section>\n<\/section>\n<\/section>\n<\/section>\n<\/section>\n<\/section>\n<\/section>\n<\/section>\n<\/section>\n<\/section>\n<\/section>\n<\/section>\n<\/section>\n<\/section>\n<\/section>\n<\/section>\n<\/section>\n<section powered-by=\"xiumi.us\">\n<section style=\"display: contents;\" powered-by=\"xiumi.us\">\n<section style=\"display: contents;\">\n<section style=\"display: contents;\">\n<section style=\"height: 0px;overflow: hidden;\"><span style=\"font-size: 14px;letter-spacing: 0.578px;caret-color: red;\"> <\/span><\/section>\n<\/section>\n<\/section>\n<\/section>\n<\/section>\n<\/section>\n<\/section>\n<\/section>\n<section style=\"margin: 10px 0% 8px;justify-content: flex-start;display: flex;flex-flow: row nowrap;\" powered-by=\"xiumi.us\">\n<section style=\"display: inline-block;width: 100%;vertical-align: top;border-left: 3px solid rgb(219, 219, 219);border-bottom-left-radius: 0px;padding-left: 8px;align-self: flex-start;flex: 0 0 auto;\">\n<section style=\"color: rgba(0, 0, 0, 0.5);text-align: justify;font-size: 14px;\" powered-by=\"xiumi.us\">\n<p style=\"white-space: normal;\"><span style=\"font-size: 14px;letter-spacing: 0.578px;\">\u5c0f\u679c\u4eca\u5929\u4e3a\u5927\u5bb6\u5206\u4eab\u7684\u5185\u5bb9\u4e5f\u662f\u5e72\u8d27\u6ee1\u6ee1\uff0c\u5206\u4eab\u7684\u4e3b\u8981\u5185\u5bb9\u662f\u4ec0\u4e48\u5462\uff1f<\/span><\/p>\n<\/section>\n<\/section>\n<\/section>\n<section style=\"text-align: justify;\" powered-by=\"xiumi.us\">\n<p style=\"text-align: center;\"><br \/><\/p>\n<p style=\"text-align: left;\"><span style=\"font-size: 14px;letter-spacing: 0.034em;text-align: justify;\">\u5229\u7528GSVA+limma\u8fdb\u884c\u5dee\u5f02\u901a\u7edc\u5206\u6790\uff0c\u7136\u540e\u7ed8\u5236\u5dee\u5f02\u901a\u8def\u6761\u5f62\u56fe\uff0c\u5c0f\u679c\u89c9\u5f97\u662f\u4e00\u4e2a\u975e\u5e38\u4e0d\u9519\u7684\u5206\u6790\u5185\u5bb9\uff0c\u53ef\u4ee5\u4e30\u5bcc\u6587\u7ae0\u5185\u5bb9\uff0c\u6709\u611f\u5174\u8da3\u7684\u5c0f\u4f19\u4f34\u53ef\u4ee5\u8ddf\u7740\u5c0f\u679c\u4e00\u8d77\u5f00\u59cb\u4eca\u5929\u7684\u5206\u4eab\u5b66\u4e60\u3002<\/span><br \/><\/p>\n<p style=\"text-align: left;\"><br \/><\/p>\n<\/section>\n<\/section>\n<\/section>\n<\/section>\n<section powered-by=\"xiumi.us\">\n<p style=\"text-align: center;white-space: normal;\"><strong><em><span style=\"font-size: 20px;\">\u4f55\u4e3aGSVA\u5206\u6790\uff1f<\/span><\/em><\/strong><\/p>\n<p style=\"white-space: normal;\"><span style=\"font-size: 14px;\">\u5728\u5206\u6790\u4e4b\u524d\u5c0f\u679c\u4e3a\u5927\u5bb6\u7b80\u5355\u4ecb\u7ecd\u4e00\u4e0bGSVA\u5206\u6790\uff0cGSVA\u88ab\u79f0\u4e3a\u57fa\u56e0\u96c6\u53d8\u5f02\u5206\u6790\uff0c\u662f\u4e00\u79cd\u975e\u53c2\u6570\u7684\u65e0\u76d1\u7763\u5206\u6790\u5206\u6790\uff0c\u53ef\u4ee5\u8ba1\u7b97\u6bcf\u4e2a\u6837\u672c\u4e2d\u7279\u5b9a\u57fa\u56e0\u96c6\u7684\u5bcc\u96c6\u5206\u6570\uff1b\u5728\u4e86\u89e3\u4e86GSVA\u5206\u6790\u7684\u57fa\u672c\u539f\u7406\u4e4b\u540e\uff0c\u5c0f\u4f19\u4f34\u4eec\u662f\u4e0d\u662f\u4f1a\u4ea7\u751f\u7591\u95ee\u8be5\u5982\u4f55\u8fdb\u884c\u5206\u6790\uff1f\u8be5\u5206\u6790\u5176\u5b9e\u5f88\u7b80\u5355\uff0c\u53ea\u9700\u8981\u51c6\u5907\u57fa\u56e0\u8868\u8fbe\u77e9\u9635\u548c\u57fa\u56e0\u96c6list\u8fd9\u4e24\u4e2a\u6587\u4ef6\u3002<\/span><\/p>\n<p style=\"white-space: normal;\"><strong><span style=\"font-size: 14px;\">\u5982\u4f55\u4e0b\u8f7d\u57fa\u56e0\u96c6list\u6587\u4ef6?<\/span><\/strong><\/p>\n<p style=\"white-space: normal;text-align: left;\"><span style=\"font-size: 14px;\">\u5728GSEA\u5b98\u7f51MSigDb\u4e0b\u8f7dgmt\u683c\u5f0f\u57fa\u56e0\u901a\u8def\u6587\u4ef6\uff0c\u7f51\u5740\uff1a<\/span><span style=\"font-size: 14px;text-decoration: underline;\"><strong>https:\/\/www.gsea-msigdb.org\/gsea\/msigdb\/<\/strong><\/span><span style=\"font-size: 14px;\">\uff0c\u9700\u8981\u6ce8\u610f\u7684\u662f\u4e0b\u8f7d\u6570\u636e\u65f6\u8981\u8fdb\u884c\u90ae\u7bb1\u6ce8\u518c\u624d\u80fd\u591f\u4e0b\u8f7d\u5965\u3002<\/span><\/p>\n<p style=\"text-align: center;\"><img decoding=\"async\" class=\"rich_pages wxw-img\" data-galleryid=\"\" data-ratio=\"0.40252707581227437\" data-s=\"300,640\" src=\"https:\/\/i0.wp.com\/www.biocloudservice.com\/wordpress\/wp-content\/uploads\/2024\/06\/2_akgh2KynEsibw531PfTRKetficZiag.png?w=640\" onerror=\"this.src='https:\/\/mmbiz.qpic.cn\/sz_mmbiz_png\/zcicibWZessAyL6u7wJswOp8vtpzGp6vYn87Cr1XydoSC9icpd2J5RiaMmGN0IXakgh2KynEsibw531PfTRKetficZiag\/640?wx_fmt=png'\" data-type=\"png\" data-w=\"554\" style=\"\" data-recalc-dims=\"1\"><\/p>\n<p style=\"white-space: normal;\"><span style=\"font-size: 14px;\"> <\/span><\/p>\n<p style=\"text-align: center;\"><img decoding=\"async\" class=\"rich_pages wxw-img\" data-galleryid=\"\" data-ratio=\"0.27256317689530685\" data-s=\"300,640\" src=\"https:\/\/i0.wp.com\/www.biocloudservice.com\/wordpress\/wp-content\/uploads\/2024\/06\/3_2wFjGoSpEFxJIO15Uby11d3O90bZtg.png?w=640\" onerror=\"this.src='https:\/\/mmbiz.qpic.cn\/sz_mmbiz_png\/zcicibWZessAyL6u7wJswOp8vtpzGp6vYnZEJXlw1bP9Nfibfa6yRviakuG42wFjGoSpEFxJIO15Uby11d3O90bZtg\/640?wx_fmt=png'\" data-type=\"png\" data-w=\"554\" style=\"\" data-recalc-dims=\"1\"><\/p>\n<p style=\"text-align: center;white-space: normal;\"><strong><em><span style=\"font-size: 20px;\">\u51c6\u5907\u9700\u8981\u7684R\u5305<\/span><\/em><\/strong><\/p>\n<\/section>\n<section class=\"code-snippet__fix code-snippet__js\">\n<ul class=\"code-snippet__line-index code-snippet__js\">\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<\/ul>\n<pre class=\"code-snippet__js\" data-lang=\"c\"><code><span class=\"code-snippet_outer\">#\u5b89\u88c5\u9700\u8981\u7684R\u5305<\/span><\/code><code><span class=\"code-snippet_outer\">BiocManager::install(<span class=\"code-snippet__string\">'limma'<\/span>)<\/span><\/code><code><span class=\"code-snippet_outer\">BiocManager::install(<span class=\"code-snippet__string\">\"GSEABase\"<\/span>)<\/span><\/code><code><span class=\"code-snippet_outer\">BiocManager::install(<span class=\"code-snippet__string\">\"GSVA\"<\/span>, version = <span class=\"code-snippet__string\">\"3.14\"<\/span>)<\/span><\/code><code><span class=\"code-snippet_outer\">install.packages(<span class=\"code-snippet__string\">\"ggprism\"<\/span>)<\/span><\/code><code><span class=\"code-snippet_outer\">install.packages(<span class=\"code-snippet__string\">\"ggplot2\"<\/span>)<\/span><\/code><code><span class=\"code-snippet_outer\">install.packages(<span class=\"code-snippet__string\">\"dplyr\"<\/span>)<\/span><\/code><code><span class=\"code-snippet_outer\">install.packages(<span class=\"code-snippet__string\">\"stringr\"<\/span>)<\/span><\/code><code><span class=\"code-snippet_outer\">instll.packages(<span class=\"code-snippet__string\">\"readxl\"<\/span>)<\/span><\/code><code><span class=\"code-snippet_outer\">#\u52a0\u8f7d\u9700\u8981\u7684R\u5305<\/span><\/code><code><span class=\"code-snippet_outer\">library(readxl)<\/span><\/code><code><span class=\"code-snippet_outer\">library(dplyr)<\/span><\/code><code><span class=\"code-snippet_outer\">library(GSEABase)<\/span><\/code><code><span class=\"code-snippet_outer\">library(GSVA)<\/span><\/code><code><span class=\"code-snippet_outer\">library(limma)<\/span><\/code><code><span class=\"code-snippet_outer\">library(stringr)<\/span><\/code><code><span class=\"code-snippet_outer\">library(ggprism)<\/span><\/code><code><span class=\"code-snippet_outer\">library(ggplot2)<\/span><\/code><\/pre>\n<\/section>\n<section powered-by=\"xiumi.us\">\n<p style=\"margin-bottom: 0px;font-size: 16px;letter-spacing: 0.578px;text-wrap: wrap;text-align: center;\"><strong><em><span style=\"font-size: 20px;\">\u7ed3\u679c\u6587\u4ef6<\/span><\/em><\/strong><\/p>\n<p style=\"margin-bottom: 0px;font-size: 16px;letter-spacing: 0.578px;text-wrap: wrap;text-align: left;\"><strong><em><span style=\"color: rgb(62, 62, 62);\">1. gsva_bar.pdf<\/span><\/em><\/strong><\/p>\n<p style=\"margin-bottom: 0px;font-size: 16px;letter-spacing: 0.578px;text-wrap: wrap;\"><span style=\"font-size: 14px;\">\u8be5\u7ed3\u679c\u56fe\u7247\u4e3a\u7ed8\u5236\u7684GSVA\u5f97\u5206\u5dee\u5f02\u901a\u8def\u6761\u5f62\u56fe<\/span><\/p>\n<p style=\"margin-bottom: 0px;font-size: 16px;letter-spacing: 0.578px;text-wrap: wrap;\"><span style=\"font-size: 14px;\"> <\/span><\/p>\n<p style=\"margin-bottom: 0px;font-size: 16px;letter-spacing: 0.578px;text-wrap: wrap;text-align: center;\"><img decoding=\"async\" class=\"rich_pages wxw-img\" data-galleryid=\"\" data-ratio=\"1.0101522842639594\" data-s=\"300,640\" src=\"https:\/\/i0.wp.com\/www.biocloudservice.com\/wordpress\/wp-content\/uploads\/2024\/06\/4_ZodFgicSrmXHD8ODDFjcFqicrX2wAA.png?w=640\" onerror=\"this.src='https:\/\/mmbiz.qpic.cn\/sz_mmbiz_png\/zcicibWZessAyL6u7wJswOp8vtpzGp6vYnXS1shpYozeLR13PtcScO3lsWc7ZodFgicSrmXHD8ODDFjcFqicrX2wAA\/640?wx_fmt=png'\" data-type=\"png\" data-w=\"394\" data-recalc-dims=\"1\"><\/p>\n<p style=\"margin-bottom: 0px;letter-spacing: 0.578px;text-wrap: wrap;font-size: 16px;\"><span style=\"font-size: 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class=\"js_pay_preview_filter\"><mp-pay-preview-filter data-offset=\"24\"><\/mp-pay-preview-filter><\/p>\n<p><\/content>\n<\/div>\n<p><\/body><br \/>\n<\/html><\/p>\n","protected":false},"excerpt":{"rendered":"<p>\u300c\u4ed8\u8d39\u300d\u3010\u4ee3\u7801-4\u3011\u590d\u73b0nature\u7ea7\u522b\u7684GSVA+limma\u5dee\u5f02\u901a\u8def\u6761\u5f62\u56fe \u539f\u521b \u5c0f\u679c 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