{"id":58967,"date":"2024-06-17T07:18:33","date_gmt":"2024-06-16T23:18:33","guid":{"rendered":"http:\/\/www.biocloudservice.com\/wordpress\/?p=58967"},"modified":"2024-06-17T07:18:33","modified_gmt":"2024-06-16T23:18:33","slug":"%e4%b8%8d%e7%9f%a5%e9%81%93%e5%93%aa%e9%87%8c%e6%89%be%e6%95%b0%e6%8d%ae%e9%9b%86%ef%bc%9fr%e8%af%ad%e8%a8%80%e6%9c%89%e7%ad%94%e6%a1%88%ef%bc%81","status":"publish","type":"post","link":"http:\/\/www.biocloudservice.com\/wordpress\/?p=58967","title":{"rendered":"\u4e0d\u77e5\u9053\u54ea\u91cc\u627e\u6570\u636e\u96c6\uff1fR\u8bed\u8a00\u6709\u7b54\u6848\uff01"},"content":{"rendered":"<p><html><br \/>\n<head><br \/>\n<title><\/title><br \/>\n<meta charset=\"utf-8\"><br \/>\n<meta name=\"viewport\" content=\"width=device-width,initial-scale=1.0,maximum-scale=1.0,user-scalable=0,viewport-fit=cover\"><\/p>\n<style>\n*{margin:0;padding:0}html{-ms-text-size-adjust:100%;-webkit-text-size-adjust:100%;line-height:1.6}img{z-index:999;position:relative;max-width:100%;margin:10px 0;}body{letter-spacing:.034em}h1,h2,h3,h4,h5,h6{font-weight:400;font-size:16px}a{color:#576b95;text-decoration:none;-webkit-tap-highlight-color:rgba(0,0,0,0)}td,th{word-wrap:break-word;padding:5px 10px;border:1px solid #DDD;}table{margin-bottom:10px;border-collapse:collapse;display:table;width:100%!important;}.appmsg_skin_default .rich_media_area_primary{background-color:#fff}.appmsg_skin_default .rich_media_area_primary .weui-loadmore_line .weui-loadmore__tips{background-color:#fff}.rich_media_area_primary{padding:20px 16px 12px;background-color:#fafafa}@media (max-width:375px){.rich_media_area_primary{padding:20px 60px 15px 60px}.rich_media_area_extra{padding:0 60px 21px 60px}}@media (min-width:1024px){.rich_media_area_primary_inner,.rich_media_area_extra_inner,body{max-width:677px;margin-left:auto;margin-right:auto}.rich_media_area_primary{padding-top:32px}}.rich_media{padding:20px;overflow:hidden;}.appmsg_skin_default .rich_media_area_primary{background-color:#fff}.appmsg_skin_default .rich_media_area_primary .weui-loadmore_line .weui-loadmore__tips{background-color:#fff}@media screen and (min-width:1024px){.rich_media_area_primary_inner,.rich_media_area_extra_inner{max-width:677px;margin-left:auto;margin-right:auto}.rich_media_area_primary{padding-top:32px}}.rich_media_content{overflow:hidden;color:#333;font-size:17px;word-wrap:break-word;-webkit-hyphens:auto;-ms-hyphens:auto;hyphens:auto;text-align:justify;position:relative;z-index:0}.rich_media_content *{max-width:100%!important;box-sizing:border-box!important;-webkit-box-sizing:border-box!important;word-wrap:break-word!important}.rich_media_content p{clear:both;min-height:1em}.rich_media_content em{font-style:italic}.rich_media_content fieldset{min-width:0}.rich_media_content .list-paddingleft-1,.rich_media_content .list-paddingleft-2,.rich_media_content .list-paddingleft-3{padding-left:2.2em}.rich_media_content .list-paddingleft-1 .list-paddingleft-2,.rich_media_content .list-paddingleft-2 .list-paddingleft-2,.rich_media_content .list-paddingleft-3 .list-paddingleft-2{padding-left:30px}.rich_media_content .list-paddingleft-1{padding-left:1.2em}.rich_media_content .list-paddingleft-3{padding-left:3.2em}.rich_media_content .code-snippet,.rich_media_content .code-snippet__fix{max-width:1000%!important}.rich_media_content .code-snippet *,.rich_media_content .code-snippet__fix *{max-width:1000%!important}.rich_media_title{font-size:22px;line-height:1.4;margin-bottom:13px;padding-bottom:13px;border-bottom:1px solid #e7e7eb;}@supports(-webkit-overflow-scrolling:touch){.rich_media_title{font-weight:700}}.rich_media_meta{display:inline-block;vertical-align:middle;padding:0 0 10px 0;font-size:15px;-webkit-tap-highlight-color:rgba(0,0,0,0)}.rich_media_meta.icon_appmsg_tag{margin-right:0px}.rich_media_meta.meta_tag_text{margin-right:0}.rich_media_meta_list em{font-style:normal}.rich_media_meta_text{color:#a5a5a5;}p{margin:0;}.msgBox{margin-top:20px;padding-top:20px;padding-left:50px;overflow:hidden;border-top:2px dashed #09a2ff;}.msg{padding-top:7px;clear:both;}.msgBody{float:right;width:100%;margin-left:55px;padding-bottom:15px;border-bottom:1px dashed #e0e0e0;}.userHeadImg{float:left;margin-left:-50px;}.userHeadImg img{width:40px;height:40px;margin-right:10px;border-radius:3px;}.userName{color:#888888;line-height:24px;font-size:14px;margin:5px 0 5px 0;height:24px;}.replyBody,.autherBody{color:#565656;font-size:15px;}.replyIcon{border-left:4px solid #33ab01;margin-right:5px;}.ad{text-decoration:none;color:#d6d4d4;font-size:12px;}.msgBodyReply{padding-top:5px;}.userName span{float:right;color:#afafaf;font-size:14px;}code{text-align:left;font-size:14px;display:block;white-space:pre;display:-webkit-box;display:-webkit-flex;display:flex;position:relative;}.code-snippet__fix{font-size:14px;margin:10px 0;display:block;color:#333;position:relative;background-color:rgba(0,0,0,0.03);border:1px solid #f0f0f0;border-radius:2px;display:-webkit-box;display:-webkit-flex;display:flex;padding-left:25px;line-height:26px}.code-snippet__fix code{text-align:left;font-size:14px;display:block;white-space:pre;display:-webkit-box;display:-webkit-flex;display:flex;position:relative;font-family:Consolas,\"Liberation Mono\",Menlo,Courier,monospace}.code-snippet__comment,.code-snippet__quote{color:#afafaf;font-style:italic}.code-snippet__keyword,.code-snippet__selector-tag,.code-snippet__subst{color:#ca7d37}.code-snippet__number,.code-snippet__literal,.code-snippet__variable,.code-snippet__template-variable,.code-snippet__tag .code-snippet__attr{color:#0e9ce5}.code-snippet__string,.code-snippet__doctag{color:#d14}.code-snippet__title,.code-snippet__section,.code-snippet__selector-id{color:#d14}.code-snippet__subst{font-weight:normal}.code-snippet__type,.code-snippet__class .code-snippet__title{color:#0e9ce5}.code-snippet__tag,.code-snippet__name,.code-snippet__attribute{color:#0e9ce5;font-weight:normal}.code-snippet__regexp,.code-snippet__link{color:#ca7d37}.code-snippet__symbol,.code-snippet__bullet{color:#d14}.code-snippet__built_in,.code-snippet__builtin-name{color:#ca7d37}.code-snippet__meta{color:#afafaf}.code-snippet__deletion{background:#fdd}.code-snippet__addition{background:#dfd}.code-snippet__emphasis{font-style:italic}.code-snippet__strong{font-weight:bold}.account_avatar{width:40px;height:40px;padding:0;}.account_info{display:-webkit-box;display:-webkit-flex;display:flex;-webkit-box-align:center;-webkit-align-items:center;padding:20px 0;align-items:center}.flex_bd{padding-left:14px;}.account_nickname{display:inline-block;vertical-align:middle;line-height:1.2;color:#576b95;font-size:14px}.account_desc{overflow:hidden;text-overflow:ellipsis;display:-webkit-box;-webkit-box-orient:vertical;-webkit-line-clamp:1;color:rgba(0,0,0,0.3);font-size:14px;line-height:1.2;padding-top:.4em}.msg_source_url{text-align:left;word-break:break-all;margin-top:20px;}.msg_source_url a{padding-right:10px;}.msg_source_url .url_text{color:#a8a8a8;}.video-desc{font-size:14px;margin-top:15px;color:#6c6c6c;}.msg_source_url{text-align:left;}.original_primary_card_tips{color:rgba(0,0,0,0.3);line-height:1.4;font-size:15px;}.weui-flex__item{margin-bottom:20px;padding:20px 16px;margin-top:16px;line-height:1.4;align-items:center;background-color:#f7f7f7;border-radius:8px;position:relative;}.original_primary_desc{color:rgba(0,0,0,0.5);font-size:14px;padding-top:4px;width:auto;overflow:hidden;text-overflow:ellipsis;}.msgBodyReplyList{border-top:1px solid #e1e1e1;margin-top:10px;}.msgBodyReplyListTop{border-top:0;}.reply_like_num{float:right;font-size:14px;color:#c7c7c7;}.msgData{margin-top:20px;color:#626262;}.msgData span{font-size:14px;padding-right:15px;}.msgData .likes{float:right;padding-right:0;}.js_text_content p{font-size:18px;}.rich_media_meta_link{font-size:15px;}blockquote {padding-left: 10px;border-left: 3px solid #dbdbdb;color: rgba(0,0,0,0.5);font-size: 15px;padding-top: 4px;margin: 1em 0;}.video_iframe{width:500px;height:400px;}.blockquote_info{color:#b5b5b5;margin-top:10px;}#copyright_logo{color:#bdbdbd;}.rich_media_meta_list{margin-bottom:10px;}.reprint{background:#efefef;border-radius:5px;padding:8px;color:#1f1f1f;}.reprint a{word-break:break-all;}.topic{color:#8e8e8e;background:#f7f7f7;border-radius:5px;padding:10px 8px;}.topic a{padding-right:5px;}.topic p{margin-bottom:5px;}\n<\/style>\n<link href=\"https:\/\/www.juyifx.cn\/config\/css\/wxArticle.css\" rel=\"stylesheet\"\/>\n<\/head><script>\nvar data={\"mp\":\"\u751f\u4fe1\u679c\",\"title\":\"\u4e0d\u77e5\u9053\u54ea\u91cc\u627e\u6570\u636e\u96c6\uff1fR\u8bed\u8a00\u6709\u7b54\u6848\uff01\",\"time\":\"2023-06-27 19:00:47\",\"timeStamp\":\"1687863647\"};\n<\/script><br \/>\n<body><\/p>\n<div class=\"rich_media\">\n<h1 class=\"rich_media_title\" id=\"activity-name\"><a href=\"http:\/\/mp.weixin.qq.com\/s?__biz=Mzg3OTg3MjQyNg==&#038;mid=2247488751&#038;idx=2&#038;sn=900a4dd1fa9fcf7eaad828fc7ccf3027&#038;chksm=cf7c842af80b0d3c14cb4187a6cbe829caef947ce898bbdeb830cdd675df7752278e04a3afc4#rd\" target=\"_blank\" rel=\"noopener\">\u4e0d\u77e5\u9053\u54ea\u91cc\u627e\u6570\u636e\u96c6\uff1fR\u8bed\u8a00\u6709\u7b54\u6848\uff01<\/a><\/h1>\n<div id=\"meta_content\" class=\"rich_media_meta_list\"><span class=\"rich_media_meta rich_media_meta_text\">\u5c0f\u5e08\u59b9&nbsp;&nbsp;<\/span><span class=\"rich_media_meta rich_media_meta_nickname\" id=\"profileBt\"><a href=\"javascript:void(0);\" class=\"wx_tap_link js_wx_tap_highlight weui-wa-hotarea\" id=\"js_name\">\u751f\u4fe1\u679c&nbsp;&nbsp;<\/a><\/span><em id=\"publish_time\" class=\"rich_media_meta rich_media_meta_text\">2023-06-27 19:00:47<\/em><\/div>\n<p><content><\/p>\n<div class=\"reprint\">\n<p>\u8f6c\u81ea\u516c\u4f17\u53f7\uff1aR\u8bed\u8a00\u5b66\u5f92<br \/><a href=\"http:\/\/mp.weixin.qq.com\/s?__biz=Mzg5MDk3Mzg4OA==&#038;mid=2247484127&#038;idx=1&#038;sn=6501a0898057da99a5f27087d7609dbf\" target=\"_blank\" title=\"\u9605\u8bfb\u539f\u6587\" rel=\"noopener\">http:\/\/mp.weixin.qq.com\/s?__biz=Mzg5MDk3Mzg4OA==&#038;mid=2247484127&#038;idx=1&#038;sn=6501a0898057da99a5f27087d7609dbf<\/a><\/p>\n<\/div>\n<section style=\"font-size: 16px;margin-bottom: 24px;\">\n<section style=\"text-align: left;justify-content: flex-start;display: flex;flex-flow: row nowrap;margin-top: 20px;margin-bottom: 25px;\" powered-by=\"xiumi.us\">\n<section style=\"display: inline-block;width: auto;vertical-align: top;align-self: flex-start;flex: 0 0 auto;min-width: 5%;height: auto;background-color: rgb(249, 172, 172);box-shadow: rgb(249, 172, 172) 0px 0px 5px 3px;\">\n<section style=\"text-align: center;transform: translate3d(2px, 0px, 0px);margin-top: -14px;margin-bottom: -14px;\" powered-by=\"xiumi.us\">\n<p>{ \u70b9\u51fb\u84dd\u5b57\uff0c\u5173\u6ce8\u6211\u4eec }<\/p>\n<\/section>\n<\/section>\n<\/section>\n<p style=\"white-space: normal;\" powered-by=\"xiumi.us\">\u5f88\u591a\u5c0f\u4f19\u4f34\u5728\u5b66\u5b8c\u65b0\u7684\u6a21\u578b\u540e\uff0c\u5e38\u5e38\u82e6\u4e8e\u7f3a\u4e4f\u53ef\u7528\u7684\u6570\u636e\u96c6\u8fdb\u884c\u7ec3\u4e60\u3002\u7136\u800c\uff0cR\u672c\u8eab\u5c31\u53ef\u4ee5\u76f4\u63a5\u83b7\u53d6\u8bb8\u591a\u751f\u7269\u4fe1\u606f\u76f8\u5173\u6570\u636e\u96c6\u3002\u4eca\u5929\u5c31\u8ba9\u5c0f\u5e08\u59b9\u5e26\u9886\u5927\u5bb6\u4e00\u8d77\u63a2\u7d22\u4e00\u4e9b\u5e38\u89c1\u7684\u751f\u7269\u4fe1\u606f\u6570\u636e\u96c6\u5427\uff01<\/p>\n<section style=\"text-align: center;justify-content: center;display: flex;flex-flow: row nowrap;margin-top: 10px;margin-bottom: 10px;\" powered-by=\"xiumi.us\">\n<section style=\"display: inline-block;vertical-align: middle;width: auto;align-self: center;flex: 0 0 auto;min-width: 5%;height: auto;\">\n<section style=\"transform: scale(0.77);transform-origin: center center;margin-top: -6px;margin-bottom: -6px;\" powered-by=\"xiumi.us\">\n<section style=\"\">\n<section style=\"display: inline-block;width: 40px;height: 40px;vertical-align: top;overflow: hidden;background-color: rgb(249, 172, 172);border-width: 0px;border-radius: 65px;border-style: none;border-color: rgb(62, 62, 62);\">\n<section style=\"display: flex;flex-flow: row nowrap;justify-content: center;margin-top: 7px;margin-right: 0%;margin-left: 0%;\" powered-by=\"xiumi.us\">\n<section style=\"display: inline-block;vertical-align: top;width: 20px;flex: 0 0 auto;align-self: flex-start;height: auto;line-height: 0;border-width: 0px;border-style: none;border-color: rgb(62, 62, 62);overflow: hidden;\">\n<section style=\"transform: rotateZ(55deg);\" powered-by=\"xiumi.us\">\n<section style=\"text-align: right;margin-right: 0%;margin-bottom: 18px;margin-left: 0%;transform: translate3d(13px, 0px, 0px);\">\n<section style=\"display: inline-block;width: 20px;height: 8px;vertical-align: top;overflow: hidden;background-color: rgb(255, 255, 255);border-radius: 50%;border-width: 0px;border-style: none;border-color: rgb(62, 62, 62);\"><svg viewbox=\"0 0 1 1\" style=\"float:left;line-height:0;width:0;vertical-align:top;\"><\/svg><\/section>\n<\/section>\n<\/section>\n<\/section>\n<section style=\"display: inline-block;vertical-align: top;width: 20px;flex: 0 0 auto;align-self: flex-start;height: auto;line-height: 0;border-width: 0px;border-style: none;border-color: rgb(62, 62, 62);overflow: hidden;\">\n<section style=\"transform: rotateZ(305deg);\" powered-by=\"xiumi.us\">\n<section style=\"text-align: left;margin-right: 0%;margin-bottom: 18px;margin-left: 0%;transform: translate3d(-13px, 0px, 0px);\">\n<section style=\"display: inline-block;width: 20px;height: 8px;vertical-align: top;overflow: hidden;background-color: rgb(255, 255, 255);border-radius: 50%;border-width: 0px;border-style: none;border-color: rgb(62, 62, 62);\"><svg viewbox=\"0 0 1 1\" style=\"float:left;line-height:0;width:0;vertical-align:top;\"><\/svg><\/section>\n<\/section>\n<\/section>\n<\/section>\n<\/section>\n<\/section>\n<\/section>\n<\/section>\n<\/section>\n<section style=\"display: inline-block;vertical-align: middle;width: auto;align-self: center;flex: 100 100 0%;height: auto;padding-left: 10px;\">\n<section style=\"text-align: left;margin-top: 10px;\" powered-by=\"xiumi.us\">\n<section style=\"color: rgb(62, 62, 62);\">\n<p><strong>NCBI\u6570\u636e\u96c6<\/strong><\/p>\n<\/section>\n<\/section>\n<section style=\"margin-top: 2px;margin-bottom: 8px;\" powered-by=\"xiumi.us\">\n<section style=\"background-color: rgb(237, 164, 171);height: 1px;\"><svg viewbox=\"0 0 1 1\" style=\"float:left;line-height:0;width:0;vertical-align:top;\"><\/svg><\/section>\n<\/section>\n<\/section>\n<\/section>\n<p style=\"white-space: normal;\" powered-by=\"xiumi.us\">NCBI\uff08National Center for Biotechnology Information\uff09\u662f\u4e00\u4e2a\u5168\u7403\u8457\u540d\u7684\u751f\u7269\u4fe1\u606f\u5b66\u6570\u636e\u5e93\u548c\u641c\u7d22\u5f15\u64ce\uff0c\u63d0\u4f9b\u4e86\u5404\u79cd\u5404\u6837\u7684\u751f\u7269\u533b\u5b66\u4fe1\u606f\uff0c\u5305\u62ec\u57fa\u56e0\u5e8f\u5217\u3001\u86cb\u767d\u8d28\u5e8f\u5217\u3001\u57fa\u56e0\u7ec4\u6570\u636e\u3001\u6587\u732e\u6570\u636e\u7b49\u7b49\u3002\u8fd9\u4e9b\u6570\u636e\u96c6\u6db5\u76d6\u4e86\u5404\u79cd\u751f\u7269\u79cd\u7c7b\uff0c\u4ece\u7ec6\u83cc\u3001\u771f\u83cc\u5230\u690d\u7269\u3001\u52a8\u7269\uff0c\u65e0\u6240\u4e0d\u5305\u3002<\/p>\n<p style=\"white-space: normal;\" powered-by=\"xiumi.us\">\u5728R\u8bed\u8a00\u4e2d\uff0c\u53ef\u4ee5\u901a\u8fc7BiocManager\u5305\u4e2d\u7684NCBI\u5305\u83b7\u53d6NCBI\u6570\u636e\u96c6\u3002\u9996\u5148\u9700\u8981\u5b89\u88c5BiocManager\u5305\uff0c\u7136\u540e\u4f7f\u7528install\u51fd\u6570\u5b89\u88c5NCBI\u5305\u3002\u63a5\u4e0b\u6765\uff0c\u53ef\u4ee5\u4f7f\u7528ncbiFetch\u51fd\u6570\u6765\u83b7\u53d6NCBI\u6570\u636e\u96c6\u3002<\/p>\n<section class=\"code-snippet__fix code-snippet__js\">\n<ul class=\"code-snippet__line-index code-snippet__js\">\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<\/ul>\n<pre class=\"code-snippet__js\" data-lang=\"r\"><code><span class=\"code-snippet_outer\"><span class=\"code-snippet__comment\"># \u5b89\u88c5BiocManager\u5305<\/span><\/span><\/code><code><span class=\"code-snippet_outer\"><span class=\"code-snippet__keyword\">if<\/span> (!requireNamespace(<span class=\"code-snippet__string\">\"BiocManager\"<\/span>, quietly = <span class=\"code-snippet__literal\">TRUE<\/span>))<\/span><\/code><code><span class=\"code-snippet_outer\">install.packages(<span class=\"code-snippet__string\">\"BiocManager\"<\/span>)<\/span><\/code><code><span class=\"code-snippet_outer\"><span class=\"code-snippet__comment\"># \u5b89\u88c5NCBI\u5305<\/span><\/span><\/code><code><span class=\"code-snippet_outer\">BiocManager::install(<span class=\"code-snippet__string\">\"NCBI\"<\/span>)<\/span><\/code><code><span class=\"code-snippet_outer\"><span class=\"code-snippet__comment\"># \u83b7\u53d6NCBI\u6570\u636e\u96c6<\/span><\/span><\/code><code><span class=\"code-snippet_outer\">library(NCBI)<\/span><\/code><code><span class=\"code-snippet_outer\">human_genome &lt;- ncbiFetchGenome(<span class=\"code-snippet__string\">\"human\"<\/span>)<\/span><\/code><\/pre>\n<\/section>\n<section style=\"text-align: center;justify-content: center;display: flex;flex-flow: row nowrap;margin-top: 10px;margin-bottom: 10px;\" powered-by=\"xiumi.us\">\n<section style=\"display: inline-block;vertical-align: middle;width: auto;align-self: center;flex: 0 0 auto;min-width: 5%;height: auto;\">\n<section style=\"transform: scale(0.77);transform-origin: center center;margin-top: -6px;margin-bottom: -6px;\" powered-by=\"xiumi.us\">\n<section style=\"\">\n<section style=\"display: inline-block;width: 40px;height: 40px;vertical-align: top;overflow: hidden;background-color: rgb(249, 172, 172);border-width: 0px;border-radius: 65px;border-style: none;border-color: rgb(62, 62, 62);\">\n<section style=\"display: flex;flex-flow: row nowrap;justify-content: center;margin-top: 7px;margin-right: 0%;margin-left: 0%;\" powered-by=\"xiumi.us\">\n<section style=\"display: inline-block;vertical-align: top;width: 20px;flex: 0 0 auto;align-self: flex-start;height: auto;line-height: 0;border-width: 0px;border-style: none;border-color: rgb(62, 62, 62);overflow: hidden;\">\n<section style=\"transform: rotateZ(55deg);\" powered-by=\"xiumi.us\">\n<section style=\"text-align: right;margin-right: 0%;margin-bottom: 18px;margin-left: 0%;transform: translate3d(13px, 0px, 0px);\">\n<section style=\"display: inline-block;width: 20px;height: 8px;vertical-align: top;overflow: hidden;background-color: rgb(255, 255, 255);border-radius: 50%;border-width: 0px;border-style: none;border-color: rgb(62, 62, 62);\"><svg viewbox=\"0 0 1 1\" style=\"float:left;line-height:0;width:0;vertical-align:top;\"><\/svg><\/section>\n<\/section>\n<\/section>\n<\/section>\n<section style=\"display: inline-block;vertical-align: top;width: 20px;flex: 0 0 auto;align-self: flex-start;height: auto;line-height: 0;border-width: 0px;border-style: none;border-color: rgb(62, 62, 62);overflow: hidden;\">\n<section style=\"transform: rotateZ(305deg);\" powered-by=\"xiumi.us\">\n<section style=\"text-align: left;margin-right: 0%;margin-bottom: 18px;margin-left: 0%;transform: translate3d(-13px, 0px, 0px);\">\n<section style=\"display: inline-block;width: 20px;height: 8px;vertical-align: top;overflow: hidden;background-color: rgb(255, 255, 255);border-radius: 50%;border-width: 0px;border-style: none;border-color: rgb(62, 62, 62);\"><svg viewbox=\"0 0 1 1\" style=\"float:left;line-height:0;width:0;vertical-align:top;\"><\/svg><\/section>\n<\/section>\n<\/section>\n<\/section>\n<\/section>\n<\/section>\n<\/section>\n<\/section>\n<\/section>\n<section style=\"display: inline-block;vertical-align: middle;width: auto;align-self: center;flex: 100 100 0%;height: auto;padding-left: 10px;\">\n<section style=\"text-align: left;margin-top: 10px;\" powered-by=\"xiumi.us\">\n<section style=\"color: rgb(62, 62, 62);\">\n<p><strong>Bioconductor\u6570\u636e\u96c6<\/strong><\/p>\n<\/section>\n<\/section>\n<section style=\"margin-top: 2px;margin-bottom: 8px;\" powered-by=\"xiumi.us\">\n<section style=\"background-color: rgb(237, 164, 171);height: 1px;\"><svg viewbox=\"0 0 1 1\" style=\"float:left;line-height:0;width:0;vertical-align:top;\"><\/svg><\/section>\n<\/section>\n<\/section>\n<\/section>\n<p style=\"white-space: normal;\" powered-by=\"xiumi.us\">Bioconductor\u662f\u4e00\u4e2aR\u8bed\u8a00\u7684\u751f\u7269\u4fe1\u606f\u5b66\u5de5\u5177\u5305\uff0c\u63d0\u4f9b\u4e86\u8bb8\u591a\u5e38\u7528\u7684\u751f\u7269\u4fe1\u606f\u5b66\u6570\u636e\u96c6\u548c\u5206\u6790\u5de5\u5177\u3002\u5176\u4e2d\u5305\u62ec\u57fa\u56e0\u8868\u8fbe\u6570\u636e\u3001\u7a81\u53d8\u6570\u636e\u3001\u57fa\u56e0\u6ce8\u91ca\u6570\u636e\u7b49\u7b49\u3002<br  \/><\/p>\n<section class=\"code-snippet__fix code-snippet__js\">\n<ul class=\"code-snippet__line-index code-snippet__js\">\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<\/ul>\n<pre class=\"code-snippet__js\" data-lang=\"r\"><code><span class=\"code-snippet_outer\"><span class=\"code-snippet__keyword\">if<\/span> (!requireNamespace(<span class=\"code-snippet__string\">\"BiocManager\"<\/span>, quietly = <span class=\"code-snippet__literal\">TRUE<\/span>))<\/span><\/code><code><span class=\"code-snippet_outer\">install.packages(<span class=\"code-snippet__string\">\"BiocManager\"<\/span>)<\/span><\/code><code><span class=\"code-snippet_outer\">BiocManager::install()<\/span><\/code><code><span class=\"code-snippet_outer\"><span class=\"code-snippet__comment\"># \u83b7\u53d6Bioconductor\u6570\u636e\u96c6<\/span><\/span><\/code><code><span class=\"code-snippet_outer\">library(Biobase)<\/span><\/code><code><span class=\"code-snippet_outer\">data(geneData)<\/span><\/code><\/pre>\n<\/section>\n<section style=\"text-align: center;margin-top: 10px;margin-bottom: 10px;line-height: 0;\" powered-by=\"xiumi.us\">\n<section style=\"vertical-align: middle;display: inline-block;line-height: 0;\"><img decoding=\"async\" class=\"rich_pages wxw-img\" data-ratio=\"0.4503386004514673\" src=\"https:\/\/i0.wp.com\/www.biocloudservice.com\/wordpress\/wp-content\/uploads\/2024\/06\/1_94S3lfF2ZISgJuKmBDkwtFTiaYhfTA.png?w=640\" onerror=\"this.src='https:\/\/mmbiz.qpic.cn\/sz_mmbiz_png\/oCSOtP61aEVf1VJJZOUxwO2pKGibibNzWNaE1yYOpFvXliaibIiaFQoaH72NGt94S3lfF2ZISgJuKmBDkwtFTiaYhfTA\/640?wx_fmt=png'\" data-type=\"png\" data-w=\"886\" style=\"vertical-align: middle;width: 100%;\" data-recalc-dims=\"1\"><\/section>\n<\/section>\n<section style=\"text-align: center;justify-content: center;display: flex;flex-flow: row nowrap;margin-top: 10px;margin-bottom: 10px;\" powered-by=\"xiumi.us\">\n<section style=\"display: inline-block;vertical-align: middle;width: auto;align-self: center;flex: 0 0 auto;min-width: 5%;height: auto;\">\n<section style=\"transform: scale(0.77);transform-origin: center center;margin-top: -6px;margin-bottom: -6px;\" powered-by=\"xiumi.us\">\n<section style=\"\">\n<section style=\"display: inline-block;width: 40px;height: 40px;vertical-align: top;overflow: hidden;background-color: rgb(249, 172, 172);border-width: 0px;border-radius: 65px;border-style: none;border-color: rgb(62, 62, 62);\">\n<section style=\"display: flex;flex-flow: row nowrap;justify-content: center;margin-top: 7px;margin-right: 0%;margin-left: 0%;\" powered-by=\"xiumi.us\">\n<section style=\"display: inline-block;vertical-align: top;width: 20px;flex: 0 0 auto;align-self: flex-start;height: auto;line-height: 0;border-width: 0px;border-style: none;border-color: rgb(62, 62, 62);overflow: hidden;\">\n<section style=\"transform: rotateZ(55deg);\" powered-by=\"xiumi.us\">\n<section style=\"text-align: right;margin-right: 0%;margin-bottom: 18px;margin-left: 0%;transform: translate3d(13px, 0px, 0px);\">\n<section style=\"display: inline-block;width: 20px;height: 8px;vertical-align: top;overflow: hidden;background-color: rgb(255, 255, 255);border-radius: 50%;border-width: 0px;border-style: none;border-color: rgb(62, 62, 62);\"><svg viewbox=\"0 0 1 1\" style=\"float:left;line-height:0;width:0;vertical-align:top;\"><\/svg><\/section>\n<\/section>\n<\/section>\n<\/section>\n<section style=\"display: inline-block;vertical-align: top;width: 20px;flex: 0 0 auto;align-self: flex-start;height: auto;line-height: 0;border-width: 0px;border-style: none;border-color: rgb(62, 62, 62);overflow: hidden;\">\n<section style=\"transform: rotateZ(305deg);\" powered-by=\"xiumi.us\">\n<section style=\"text-align: left;margin-right: 0%;margin-bottom: 18px;margin-left: 0%;transform: translate3d(-13px, 0px, 0px);\">\n<section style=\"display: inline-block;width: 20px;height: 8px;vertical-align: top;overflow: hidden;background-color: rgb(255, 255, 255);border-radius: 50%;border-width: 0px;border-style: none;border-color: rgb(62, 62, 62);\"><svg viewbox=\"0 0 1 1\" style=\"float:left;line-height:0;width:0;vertical-align:top;\"><\/svg><\/section>\n<\/section>\n<\/section>\n<\/section>\n<\/section>\n<\/section>\n<\/section>\n<\/section>\n<\/section>\n<section style=\"display: inline-block;vertical-align: middle;width: auto;align-self: center;flex: 100 100 0%;height: auto;padding-left: 10px;\">\n<section style=\"text-align: left;margin-top: 10px;\" powered-by=\"xiumi.us\">\n<section style=\"color: rgb(62, 62, 62);\">\n<p><strong>KEGG\u6570\u636e\u96c6\uff1a<\/strong><\/p>\n<\/section>\n<\/section>\n<section style=\"margin-top: 2px;margin-bottom: 8px;\" powered-by=\"xiumi.us\">\n<section style=\"background-color: rgb(237, 164, 171);height: 1px;\"><svg viewbox=\"0 0 1 1\" style=\"float:left;line-height:0;width:0;vertical-align:top;\"><\/svg><\/section>\n<\/section>\n<\/section>\n<\/section>\n<section powered-by=\"xiumi.us\">\n<p style=\"white-space: normal;\">KEGG\uff08Kyoto Encyclopedia of Genes and Genomes\uff09\u662f\u4e00\u4e2a\u7efc\u5408\u7684\u57fa\u56e0\u7ec4\u4ee3\u8c22\u901a\u8def\u6570\u636e\u5e93\uff0c\u63d0\u4f9b\u4e86\u57fa\u56e0\u7ec4\u3001\u4ee3\u8c22\u901a\u8def\u3001\u836f\u7269\u3001\u9176\u7b49\u65b9\u9762\u7684\u4fe1\u606f\u3002\u901a\u8fc7KEGG\uff0c\u6211\u4eec\u53ef\u4ee5\u4e86\u89e3\u57fa\u56e0\u548c\u4ee3\u8c22\u901a\u8def\u4e4b\u95f4\u7684\u5173\u7cfb\uff0c\u5e76\u63a2\u7d22\u751f\u7269\u4f53\u5185\u4ee3\u8c22\u7684\u673a\u5236\u3002<\/p>\n<p style=\"white-space: normal;\">\u5728R\u8bed\u8a00\u4e2d\uff0c\u53ef\u4ee5\u901a\u8fc7KEGGREST\u5305\u83b7\u53d6KEGG\u6570\u636e\u96c6\u3002\u9996\u5148\u9700\u8981\u5b89\u88c5KEGGREST\u5305\uff0c\u7136\u540e\u4f7f\u7528KEGGREST\u51fd\u6570\u6765\u83b7\u53d6KEGG\u6570\u636e\u3002<\/p>\n<\/section>\n<section class=\"code-snippet__fix code-snippet__js\">\n<ul class=\"code-snippet__line-index code-snippet__js\">\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<\/ul>\n<pre class=\"code-snippet__js\" data-lang=\"r\"><code><span class=\"code-snippet_outer\"><span class=\"code-snippet__comment\"># \u5b89\u88c5KEGGREST\u5305<\/span><\/span><\/code><code><span class=\"code-snippet_outer\"><br  \/><\/span><\/code><code><span class=\"code-snippet_outer\"><span class=\"code-snippet__keyword\">if<\/span> (!requireNamespace(<span class=\"code-snippet__string\">\"BiocManager\"<\/span>, quietly = <span class=\"code-snippet__literal\">TRUE<\/span>))<\/span><\/code><code><span class=\"code-snippet_outer\"><br  \/><\/span><\/code><code><span class=\"code-snippet_outer\">install.packages(<span class=\"code-snippet__string\">\"BiocManager\"<\/span>)<\/span><\/code><code><span class=\"code-snippet_outer\"><br  \/><\/span><\/code><code><span class=\"code-snippet_outer\">BiocManager::install(<span class=\"code-snippet__string\">\"KEGGREST\"<\/span>)<\/span><\/code><code><span class=\"code-snippet_outer\"><br  \/><\/span><\/code><code><span class=\"code-snippet_outer\"><br  \/><\/span><\/code><code><span class=\"code-snippet_outer\"><br  \/><\/span><\/code><code><span class=\"code-snippet_outer\"><span class=\"code-snippet__comment\"># \u83b7\u53d6KEGG\u6570\u636e\u96c6<\/span><\/span><\/code><code><span class=\"code-snippet_outer\"><br  \/><\/span><\/code><code><span class=\"code-snippet_outer\">library(KEGGREST)<\/span><\/code><code><span class=\"code-snippet_outer\"><br  \/><\/span><\/code><code><span class=\"code-snippet_outer\">pathways &lt;- keggList(<span class=\"code-snippet__string\">\"pathway\"<\/span>, <span class=\"code-snippet__string\">\"hsa\"<\/span>)<\/span><\/code><\/pre>\n<\/section>\n<section style=\"text-align: center;justify-content: center;display: flex;flex-flow: row nowrap;margin-top: 10px;margin-bottom: 10px;\" powered-by=\"xiumi.us\">\n<section style=\"display: inline-block;vertical-align: middle;width: auto;align-self: center;flex: 0 0 auto;min-width: 5%;height: auto;\">\n<section style=\"transform: scale(0.77);transform-origin: center center;margin-top: -6px;margin-bottom: -6px;\" powered-by=\"xiumi.us\">\n<section style=\"\">\n<section style=\"display: inline-block;width: 40px;height: 40px;vertical-align: top;overflow: hidden;background-color: rgb(249, 172, 172);border-width: 0px;border-radius: 65px;border-style: none;border-color: rgb(62, 62, 62);\">\n<section style=\"display: flex;flex-flow: row nowrap;justify-content: center;margin-top: 7px;margin-right: 0%;margin-left: 0%;\" powered-by=\"xiumi.us\">\n<section style=\"display: inline-block;vertical-align: top;width: 20px;flex: 0 0 auto;align-self: flex-start;height: auto;line-height: 0;border-width: 0px;border-style: none;border-color: rgb(62, 62, 62);overflow: hidden;\">\n<section style=\"transform: rotateZ(55deg);\" powered-by=\"xiumi.us\">\n<section style=\"text-align: right;margin-right: 0%;margin-bottom: 18px;margin-left: 0%;transform: translate3d(13px, 0px, 0px);\">\n<section style=\"display: inline-block;width: 20px;height: 8px;vertical-align: top;overflow: hidden;background-color: rgb(255, 255, 255);border-radius: 50%;border-width: 0px;border-style: none;border-color: rgb(62, 62, 62);\"><svg viewbox=\"0 0 1 1\" style=\"float:left;line-height:0;width:0;vertical-align:top;\"><\/svg><\/section>\n<\/section>\n<\/section>\n<\/section>\n<section style=\"display: inline-block;vertical-align: top;width: 20px;flex: 0 0 auto;align-self: flex-start;height: auto;line-height: 0;border-width: 0px;border-style: none;border-color: rgb(62, 62, 62);overflow: hidden;\">\n<section style=\"transform: rotateZ(305deg);\" powered-by=\"xiumi.us\">\n<section style=\"text-align: left;margin-right: 0%;margin-bottom: 18px;margin-left: 0%;transform: translate3d(-13px, 0px, 0px);\">\n<section style=\"display: inline-block;width: 20px;height: 8px;vertical-align: top;overflow: hidden;background-color: rgb(255, 255, 255);border-radius: 50%;border-width: 0px;border-style: none;border-color: rgb(62, 62, 62);\"><svg viewbox=\"0 0 1 1\" style=\"float:left;line-height:0;width:0;vertical-align:top;\"><\/svg><\/section>\n<\/section>\n<\/section>\n<\/section>\n<\/section>\n<\/section>\n<\/section>\n<\/section>\n<\/section>\n<section style=\"display: inline-block;vertical-align: middle;width: auto;align-self: center;flex: 100 100 0%;height: auto;padding-left: 10px;\">\n<section style=\"text-align: left;margin-top: 10px;\" powered-by=\"xiumi.us\">\n<section style=\"color: rgb(62, 62, 62);\">\n<p><strong>UniProt\u6570\u636e\u96c6\uff1a<\/strong><\/p>\n<\/section>\n<\/section>\n<section style=\"margin-top: 2px;margin-bottom: 8px;\" powered-by=\"xiumi.us\">\n<section style=\"background-color: rgb(237, 164, 171);height: 1px;\"><svg viewbox=\"0 0 1 1\" style=\"float:left;line-height:0;width:0;vertical-align:top;\"><\/svg><\/section>\n<\/section>\n<\/section>\n<\/section>\n<section powered-by=\"xiumi.us\">\n<p style=\"white-space: normal;\">UniProt\u662f\u4e00\u4e2a\u7efc\u5408\u7684\u86cb\u767d\u8d28\u5e8f\u5217\u548c\u6ce8\u91ca\u6570\u636e\u5e93\uff0c\u63d0\u4f9b\u4e86\u4e30\u5bcc\u7684\u86cb\u767d\u8d28\u4fe1\u606f\u548c\u6ce8\u91ca\u4fe1\u606f\u3002\u5728UniProt\u4e2d\uff0c\u53ef\u4ee5\u67e5\u627e\u86cb\u767d\u8d28\u5e8f\u5217\u3001\u529f\u80fd\u3001\u7ed3\u6784\u3001\u4e9a\u7ec6\u80de\u5b9a\u4f4d\u3001\u8868\u8fbe\u3001\u76f8\u4e92\u4f5c\u7528\u7b49\u65b9\u9762\u7684\u4fe1\u606f\uff0c\u8fd9\u4e9b\u4fe1\u606f\u5bf9\u4e8e\u7814\u7a76\u86cb\u767d\u8d28\u7684\u7ed3\u6784\u548c\u529f\u80fd\u975e\u5e38\u6709\u7528\u3002<\/p>\n<p style=\"white-space: normal;\">\u5728R\u8bed\u8a00\u4e2d\uff0c\u53ef\u4ee5\u901a\u8fc7UniProt.ws\u5305\u83b7\u53d6UniProt\u6570\u636e\u96c6\u3002\u9996\u5148\u9700\u8981\u5b89\u88c5UniProt.ws\u5305\uff0c\u7136\u540e\u4f7f\u7528uniprot\u51fd\u6570\u6765\u83b7\u53d6UniProt\u6570\u636e\u3002<\/p>\n<\/section>\n<section class=\"code-snippet__fix code-snippet__js\">\n<ul class=\"code-snippet__line-index code-snippet__js\">\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<\/ul>\n<pre class=\"code-snippet__js\" data-lang=\"r\"><code><span class=\"code-snippet_outer\"><span class=\"code-snippet__comment\"># \u5b89\u88c5UniProt.ws\u5305<\/span><\/span><\/code><code><span class=\"code-snippet_outer\"><span class=\"code-snippet__keyword\">if<\/span> (!requireNamespace(<span class=\"code-snippet__string\">\"BiocManager\"<\/span>, quietly = <span class=\"code-snippet__literal\">TRUE<\/span>))<\/span><\/code><code><span class=\"code-snippet_outer\">install.packages(<span class=\"code-snippet__string\">\"BiocManager\"<\/span>)<\/span><\/code><code><span class=\"code-snippet_outer\">BiocManager::install(<span class=\"code-snippet__string\">\"UniProt.ws\"<\/span>)<\/span><\/code><code><span class=\"code-snippet_outer\"><span class=\"code-snippet__comment\"># \u83b7\u53d6UniProt\u6570\u636e\u96c6<\/span><\/span><\/code><code><span class=\"code-snippet_outer\">library(UniProt.ws)<\/span><\/code><code><span class=\"code-snippet_outer\">uniprot_data &lt;- UniProt.ws::getUniProt(id = <span class=\"code-snippet__string\">\"P04637\"<\/span>, columns = <span class=\"code-snippet__built_in\">c<\/span>(<span class=\"code-snippet__string\">\"entry\"<\/span>, <span class=\"code-snippet__string\">\"protein.names\"<\/span>))<\/span><\/code><\/pre>\n<\/section>\n<section style=\"text-align: center;justify-content: center;display: flex;flex-flow: row nowrap;margin-top: 10px;margin-bottom: 10px;\" powered-by=\"xiumi.us\">\n<section style=\"display: inline-block;vertical-align: middle;width: auto;align-self: center;flex: 0 0 auto;min-width: 5%;height: auto;\">\n<section style=\"transform: scale(0.77);transform-origin: center center;margin-top: -6px;margin-bottom: -6px;\" powered-by=\"xiumi.us\">\n<section style=\"\">\n<section style=\"display: inline-block;width: 40px;height: 40px;vertical-align: top;overflow: hidden;background-color: rgb(249, 172, 172);border-width: 0px;border-radius: 65px;border-style: none;border-color: rgb(62, 62, 62);\">\n<section style=\"display: flex;flex-flow: row nowrap;justify-content: center;margin-top: 7px;margin-right: 0%;margin-left: 0%;\" powered-by=\"xiumi.us\">\n<section style=\"display: inline-block;vertical-align: top;width: 20px;flex: 0 0 auto;align-self: flex-start;height: auto;line-height: 0;border-width: 0px;border-style: none;border-color: rgb(62, 62, 62);overflow: hidden;\">\n<section style=\"transform: rotateZ(55deg);\" powered-by=\"xiumi.us\">\n<section style=\"text-align: right;margin-right: 0%;margin-bottom: 18px;margin-left: 0%;transform: translate3d(13px, 0px, 0px);\">\n<section style=\"display: inline-block;width: 20px;height: 8px;vertical-align: top;overflow: hidden;background-color: rgb(255, 255, 255);border-radius: 50%;border-width: 0px;border-style: none;border-color: rgb(62, 62, 62);\"><svg viewbox=\"0 0 1 1\" style=\"float:left;line-height:0;width:0;vertical-align:top;\"><\/svg><\/section>\n<\/section>\n<\/section>\n<\/section>\n<section style=\"display: inline-block;vertical-align: top;width: 20px;flex: 0 0 auto;align-self: flex-start;height: auto;line-height: 0;border-width: 0px;border-style: none;border-color: rgb(62, 62, 62);overflow: hidden;\">\n<section style=\"transform: rotateZ(305deg);\" powered-by=\"xiumi.us\">\n<section style=\"text-align: left;margin-right: 0%;margin-bottom: 18px;margin-left: 0%;transform: translate3d(-13px, 0px, 0px);\">\n<section style=\"display: inline-block;width: 20px;height: 8px;vertical-align: top;overflow: hidden;background-color: rgb(255, 255, 255);border-radius: 50%;border-width: 0px;border-style: none;border-color: rgb(62, 62, 62);\"><svg viewbox=\"0 0 1 1\" style=\"float:left;line-height:0;width:0;vertical-align:top;\"><\/svg><\/section>\n<\/section>\n<\/section>\n<\/section>\n<\/section>\n<\/section>\n<\/section>\n<\/section>\n<\/section>\n<section style=\"display: inline-block;vertical-align: middle;width: auto;align-self: center;flex: 100 100 0%;height: auto;padding-left: 10px;\">\n<section style=\"text-align: left;margin-top: 10px;\" powered-by=\"xiumi.us\">\n<section style=\"color: rgb(62, 62, 62);\">\n<p><strong>TCGA\u6570\u636e\u96c6\uff1a<\/strong><\/p>\n<\/section>\n<\/section>\n<section style=\"margin-top: 2px;margin-bottom: 8px;\" powered-by=\"xiumi.us\">\n<section style=\"background-color: rgb(237, 164, 171);height: 1px;\"><svg viewbox=\"0 0 1 1\" style=\"float:left;line-height:0;width:0;vertical-align:top;\"><\/svg><\/section>\n<\/section>\n<\/section>\n<\/section>\n<section powered-by=\"xiumi.us\">\n<p style=\"white-space: normal;\">TCGA\uff08The Cancer Genome Atlas\uff09\u662f\u4e00\u4e2a\u81f4\u529b\u4e8e\u764c\u75c7\u57fa\u56e0\u7ec4\u5b66\u7814\u7a76\u7684\u9879\u76ee\uff0c\u65e8\u5728\u6df1\u5165\u4e86\u89e3\u5404\u79cd\u764c\u75c7\u7684\u5206\u5b50\u7279\u5f81\uff0c\u5e76\u63a8\u52a8\u764c\u75c7\u6cbb\u7597\u7684\u8fdb\u5c55\u3002TCGA\u9879\u76ee\u63d0\u4f9b\u4e86\u5927\u91cf\u7684\u764c\u75c7\u57fa\u56e0\u7ec4\u6570\u636e\uff0c\u5305\u62ec\u57fa\u56e0\u8868\u8fbe\u3001\u7a81\u53d8\u3001DNA\u7532\u57fa\u5316\u7b49\u591a\u4e2a\u65b9\u9762\u7684\u6570\u636e\u3002<\/p>\n<p style=\"white-space: normal;\">\u5728R\u8bed\u8a00\u4e2d\uff0c\u53ef\u4ee5\u901a\u8fc7TCGAbiolinks\u5305\u83b7\u53d6TCGA\u6570\u636e\u96c6\u3002\u9996\u5148\u9700\u8981\u5b89\u88c5TCGAbiolinks\u5305\uff0c\u7136\u540e\u4f7f\u7528GDCquery\u51fd\u6570\u6765\u83b7\u53d6TCGA\u6570\u636e\u3002<\/p>\n<\/section>\n<section class=\"code-snippet__fix code-snippet__js\">\n<ul class=\"code-snippet__line-index code-snippet__js\">\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<\/ul>\n<pre class=\"code-snippet__js\" data-lang=\"r\"><code><span class=\"code-snippet_outer\"><span class=\"code-snippet__comment\"># \u5b89\u88c5TCGAbiolinks\u5305<\/span><\/span><\/code><code><span class=\"code-snippet_outer\"><span class=\"code-snippet__keyword\">if<\/span> (!requireNamespace(<span class=\"code-snippet__string\">\"BiocManager\"<\/span>, quietly = <span class=\"code-snippet__literal\">TRUE<\/span>))<\/span><\/code><code><span class=\"code-snippet_outer\">install.packages(<span class=\"code-snippet__string\">\"BiocManager\"<\/span>)<\/span><\/code><code><span class=\"code-snippet_outer\">BiocManager::install(<span class=\"code-snippet__string\">\"TCGAbiolinks\"<\/span>)<\/span><\/code><code><span class=\"code-snippet_outer\"><span class=\"code-snippet__comment\"># \u83b7\u53d6TCGA\u6570\u636e\u96c6<\/span><\/span><\/code><code><span class=\"code-snippet_outer\">library(TCGAbiolinks)<\/span><\/code><code><span class=\"code-snippet_outer\">query &lt;- GDCquery(project = <span class=\"code-snippet__string\">\"TCGA-LUAD\"<\/span>,<\/span><\/code><code><span class=\"code-snippet_outer\">data.category = <span class=\"code-snippet__string\">\"Transcriptome Profiling\"<\/span>,<\/span><\/code><code><span class=\"code-snippet_outer\">data.type= <span class=\"code-snippet__string\">\"Gene Expression Quantification\"<\/span>,<\/span><\/code><code><span class=\"code-snippet_outer\">workflow.type = <span class=\"code-snippet__string\">\"HTSeq - FPKM\"<\/span>)<\/span><\/code><code><span class=\"code-snippet_outer\">GDCdownload(query)<\/span><\/code><code><span class=\"code-snippet_outer\">LUAD &lt;- GDCprepare(query)<\/span><\/code><\/pre>\n<\/section>\n<section style=\"text-align: center;justify-content: center;display: flex;flex-flow: row nowrap;margin-top: 10px;margin-bottom: 10px;\" powered-by=\"xiumi.us\">\n<section style=\"display: inline-block;vertical-align: middle;width: auto;align-self: center;flex: 0 0 auto;min-width: 5%;height: auto;\">\n<section style=\"transform: scale(0.77);transform-origin: center center;margin-top: -6px;margin-bottom: -6px;\" powered-by=\"xiumi.us\">\n<section style=\"\">\n<section style=\"display: inline-block;width: 40px;height: 40px;vertical-align: top;overflow: hidden;background-color: rgb(249, 172, 172);border-width: 0px;border-radius: 65px;border-style: none;border-color: rgb(62, 62, 62);\">\n<section style=\"display: flex;flex-flow: row nowrap;justify-content: center;margin-top: 7px;margin-right: 0%;margin-left: 0%;\" powered-by=\"xiumi.us\">\n<section style=\"display: inline-block;vertical-align: top;width: 20px;flex: 0 0 auto;align-self: flex-start;height: auto;line-height: 0;border-width: 0px;border-style: none;border-color: rgb(62, 62, 62);overflow: hidden;\">\n<section style=\"transform: rotateZ(55deg);\" powered-by=\"xiumi.us\">\n<section style=\"text-align: right;margin-right: 0%;margin-bottom: 18px;margin-left: 0%;transform: translate3d(13px, 0px, 0px);\">\n<section style=\"display: inline-block;width: 20px;height: 8px;vertical-align: top;overflow: hidden;background-color: rgb(255, 255, 255);border-radius: 50%;border-width: 0px;border-style: none;border-color: rgb(62, 62, 62);\"><svg viewbox=\"0 0 1 1\" style=\"float:left;line-height:0;width:0;vertical-align:top;\"><\/svg><\/section>\n<\/section>\n<\/section>\n<\/section>\n<section style=\"display: inline-block;vertical-align: top;width: 20px;flex: 0 0 auto;align-self: flex-start;height: auto;line-height: 0;border-width: 0px;border-style: none;border-color: rgb(62, 62, 62);overflow: hidden;\">\n<section style=\"transform: rotateZ(305deg);\" powered-by=\"xiumi.us\">\n<section style=\"text-align: left;margin-right: 0%;margin-bottom: 18px;margin-left: 0%;transform: translate3d(-13px, 0px, 0px);\">\n<section style=\"display: inline-block;width: 20px;height: 8px;vertical-align: top;overflow: hidden;background-color: rgb(255, 255, 255);border-radius: 50%;border-width: 0px;border-style: none;border-color: rgb(62, 62, 62);\"><svg viewbox=\"0 0 1 1\" style=\"float:left;line-height:0;width:0;vertical-align:top;\"><\/svg><\/section>\n<\/section>\n<\/section>\n<\/section>\n<\/section>\n<\/section>\n<\/section>\n<\/section>\n<\/section>\n<section style=\"display: inline-block;vertical-align: middle;width: auto;align-self: center;flex: 100 100 0%;height: auto;padding-left: 10px;\">\n<section style=\"text-align: left;margin-top: 10px;\" powered-by=\"xiumi.us\">\n<section style=\"color: rgb(62, 62, 62);\">\n<p><strong>GEO\u6570\u636e\u96c6\uff1a<\/strong><\/p>\n<\/section>\n<\/section>\n<section style=\"margin-top: 2px;margin-bottom: 8px;\" powered-by=\"xiumi.us\">\n<section style=\"background-color: rgb(237, 164, 171);height: 1px;\"><svg viewbox=\"0 0 1 1\" style=\"float:left;line-height:0;width:0;vertical-align:top;\"><\/svg><\/section>\n<\/section>\n<\/section>\n<\/section>\n<section powered-by=\"xiumi.us\">\n<p style=\"white-space: normal;\">GEO\uff08Gene Expression Omnibus\uff09\u662f\u4e00\u4e2a\u57fa\u56e0\u8868\u8fbe\u6570\u636e\u96c6\u6570\u636e\u5e93\uff0c\u5305\u542b\u4e86\u5927\u91cf\u7684\u57fa\u56e0\u8868\u8fbe\u6570\u636e\u548c\u5143\u6570\u636e\u3002\u8fd9\u4e9b\u6570\u636e\u96c6\u6d89\u53ca\u591a\u79cd\u751f\u7269\u5b66\u5b9e\u9a8c\uff0c\u5305\u62ec\u57fa\u56e0\u8868\u8fbe\u3001\u5916\u663e\u5b50\u7ec4\u3001\u7532\u57fa\u5316\u3001\u86cb\u767d\u8d28\u7ec4\u7b49\u65b9\u9762\u7684\u6570\u636e\u3002GEO\u7684\u6570\u636e\u96c6\u53ef\u4ee5\u5e2e\u52a9\u6211\u4eec\u4e86\u89e3\u57fa\u56e0\u8868\u8fbe\u6a21\u5f0f\u3001\u86cb\u767d\u8d28\u529f\u80fd\u3001\u57fa\u56e0\u8c03\u63a7\u7b49\u65b9\u9762\u7684\u4fe1\u606f\u3002<\/p>\n<p style=\"white-space: normal;\">\u5728R\u8bed\u8a00\u4e2d\uff0c\u53ef\u4ee5\u901a\u8fc7GEOquery\u5305\u83b7\u53d6GEO\u6570\u636e\u96c6\u3002\u9996\u5148\u9700\u8981\u5b89\u88c5GEOquery\u5305\uff0c\u7136\u540e\u4f7f\u7528getGEO\u51fd\u6570\u6765\u83b7\u53d6GEO\u6570\u636e\u3002<\/p>\n<\/section>\n<section class=\"code-snippet__fix code-snippet__js\">\n<ul class=\"code-snippet__line-index code-snippet__js\">\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<\/ul>\n<pre class=\"code-snippet__js\" data-lang=\"r\"><code><span class=\"code-snippet_outer\"><span class=\"code-snippet__comment\"># \u5b89\u88c5GEOquery\u5305<\/span><\/span><\/code><code><span class=\"code-snippet_outer\">install.packages(<span class=\"code-snippet__string\">\"GEOquery\"<\/span>)<\/span><\/code><code><span class=\"code-snippet_outer\"><span class=\"code-snippet__comment\"># \u83b7\u53d6GEO\u6570\u636e\u96c6<\/span><\/span><\/code><code><span class=\"code-snippet_outer\">library(GEOquery)<\/span><\/code><code><span class=\"code-snippet_outer\">gse &lt;- getGEO(<span class=\"code-snippet__string\">\"GSE106817\"<\/span>)<\/span><\/code><code><span class=\"code-snippet_outer\">gse_data &lt;- as.data.frame(exprs(gse[[<span class=\"code-snippet__number\">1<\/span>]]))<\/span><\/code><\/pre>\n<\/section>\n<section style=\"text-align: center;margin-top: 10px;margin-bottom: 10px;line-height: 0;\" powered-by=\"xiumi.us\">\n<section style=\"vertical-align: middle;display: inline-block;line-height: 0;\"><img decoding=\"async\" class=\"rich_pages wxw-img\" data-ratio=\"0.6297814207650273\" src=\"https:\/\/i0.wp.com\/www.biocloudservice.com\/wordpress\/wp-content\/uploads\/2024\/06\/2_e6pGF6AQ6DnOaX4jU0IEP2h9ZtCZvg.png?w=640\" onerror=\"this.src='https:\/\/mmbiz.qpic.cn\/sz_mmbiz_png\/oCSOtP61aEVf1VJJZOUxwO2pKGibibNzWNHhs1lyTYh5DUwPoX8hO1Sicp0e6pGF6AQ6DnOaX4jU0IEP2h9ZtCZvg\/640?wx_fmt=png'\" data-type=\"png\" data-w=\"732\" style=\"vertical-align: middle;width: 100%;\"  data-recalc-dims=\"1\" \/><\/section>\n<\/section>\n<section powered-by=\"xiumi.us\">\n<p style=\"white-space: normal;\">R\u8bed\u8a00\u53ef\u4e0d\u53ea\u8bed\u6cd5\u548c\u51fd\u6570\uff01\u5bf9\u4e8e\u90a3\u4e9b\u70ed\u7231\u751f\u7269\u4fe1\u606f\u5b66\u7684\u5c0f\u4f19\u4f34\u6765\u8bf4\uff0cR\u8bed\u8a00\u8fd8\u63d0\u4f9b\u4e86\u8bb8\u591a\u65b9\u4fbf\u83b7\u53d6\u751f\u7269\u4fe1\u606f\u6570\u636e\u96c6\u7684\u5de5\u5177\u5305\u3002\u8fd9\u4e9b\u5de5\u5177\u5305\u5305\u62ecNCBI\u3001Bioconductor\u3001KEGG\u3001UniProt\u3001TCGA\u548cGEO\u7b49\uff0c\u901a\u8fc7\u7b80\u5355\u7684\u4ee3\u7801\u5c31\u53ef\u4ee5\u83b7\u53d6\u4e30\u5bcc\u7684\u751f\u7269\u4fe1\u606f\u6570\u636e\u96c6\uff0c\u8ba9\u4f60\u6109\u5feb\u5730\u8fdb\u884c\u751f\u7269\u4fe1\u606f\u5b66\u7ec3\u4e60\u548c\u5206\u6790\u3002\u8fd9\u4e9b\u6570\u636e\u96c6\u4e0d\u4ec5\u5305\u62ec\u57fa\u56e0\u5e8f\u5217\u3001\u86cb\u767d\u8d28\u5e8f\u5217\u3001\u57fa\u56e0\u7ec4\u6570\u636e\uff0c\u8fd8\u6709\u57fa\u56e0\u8868\u8fbe\u6570\u636e\u3001\u7a81\u53d8\u6570\u636e\u3001DNA\u7532\u57fa\u5316\u6570\u636e\u7b49\u7b49\u3002\u5c0f\u4f19\u4f34\u4eec\u53ef\u4ee5\u5728R\u8bed\u8a00\u4e2d\u8f7b\u677e\u5730\u63a2\u7d22\u57fa\u56e0\u7ec4\u7684\u5965\u79d8\uff0c\u7814\u7a76\u86cb\u767d\u8d28\u7684\u7ed3\u6784\u4e0e\u529f\u80fd\uff0c\u8fd8\u53ef\u4ee5\u7528\u6570\u636e\u7ed8\u5236\u6f02\u4eae\u7684\u56fe\u5f62\uff5e<\/p>\n<p style=\"white-space: normal;\">\u5feb\u5e26\u4e0a\u8fd9\u4e9b\u6570\u636e\u96c6\u5230\u4e91\u751f\u4fe1\u5e73\u53f0\u548c\u5c0f\u5e08\u59b9\u4e00\u8d77\u8bd5\u8bd5\u5c0f\u5de5\u5177\u5427\uff01<strong>http:\/\/www.biocloudservice.com\/home.html<\/strong><\/p>\n<section style=\"letter-spacing: 0.578px;white-space: normal;font-size: 16px;\">\n<section powered-by=\"xiumi.us\" style=\"margin-top: 10px;margin-bottom: 10px;text-align: center;justify-content: center;display: flex;flex-flow: row nowrap;\">\n<section style=\"margin-right: 10px;display: inline-block;vertical-align: middle;width: auto;flex: 100 100 0%;height: auto;align-self: center;\">\n<section powered-by=\"xiumi.us\" style=\"margin-top: 10px;margin-bottom: 10px;\">\n<section style=\"background-color: rgb(249, 172, 172);height: 1px;\"><svg viewbox=\"0 0 1 1\" style=\"float:left;line-height:0;width:0;vertical-align:top;\"><\/svg><\/section>\n<\/section>\n<\/section>\n<section style=\"margin-right: 10px;padding-right: 8px;padding-left: 8px;display: inline-block;vertical-align: middle;width: auto;align-self: center;flex: 0 0 auto;min-width: 5%;height: auto;border-style: solid;border-width: 1px;border-color: rgb(249, 172, 172);\">\n<section powered-by=\"xiumi.us\" style=\"text-align: justify;color: rgb(249, 172, 172);\">\n<p>E<\/p>\n<\/section>\n<\/section>\n<section style=\"margin-right: 10px;padding-right: 8px;padding-left: 8px;display: inline-block;vertical-align: middle;width: auto;align-self: center;flex: 0 0 auto;min-width: 5%;height: auto;border-style: solid;border-width: 1px;border-color: rgb(249, 172, 172);\">\n<section powered-by=\"xiumi.us\" style=\"text-align: justify;color: rgb(249, 172, 172);\">\n<p>N<\/p>\n<\/section>\n<\/section>\n<section style=\"margin-right: 10px;padding-right: 8px;padding-left: 8px;display: inline-block;vertical-align: middle;width: auto;align-self: center;flex: 0 0 auto;min-width: 5%;height: auto;border-style: solid;border-width: 1px;border-color: rgb(249, 172, 172);\">\n<section powered-by=\"xiumi.us\" style=\"text-align: justify;color: rgb(249, 172, 172);\">\n<p>D<\/p>\n<\/section>\n<\/section>\n<section style=\"display: inline-block;vertical-align: middle;width: auto;align-self: center;flex: 100 100 0%;height: auto;\">\n<section powered-by=\"xiumi.us\" style=\"margin-top: 10px;margin-bottom: 10px;\">\n<section style=\"background-color: rgb(249, 172, 172);height: 1px;\"><svg viewbox=\"0 0 1 1\" style=\"float:left;line-height:0;width:0;vertical-align:top;\"><\/svg><\/section>\n<\/section>\n<\/section>\n<\/section>\n<\/section>\n<p style=\"letter-spacing: 0.578px;white-space: normal;text-align: center;\"><img decoding=\"async\" class=\"rich_pages wxw-img\" data-galleryid=\"\" data-ratio=\"0.5555555555555556\" data-s=\"300,640\" src=\"https:\/\/i0.wp.com\/www.biocloudservice.com\/wordpress\/wp-content\/uploads\/2024\/06\/3_icWAmgGMVEzREAJmM59ov44ziaMCGg-1.jpg?w=640\" onerror=\"this.src='https:\/\/mmbiz.qpic.cn\/sz_mmbiz_jpg\/oCSOtP61aEWjRWAeR9wicY9JyrK13cNBaR2PPYHOsBTrS4rJOUOnJCEIxt1icWAmgGMVEzREAJmM59ov44ziaMCGg\/640?wx_fmt=jpeg'\" data-type=\"jpeg\" data-w=\"900\"  data-recalc-dims=\"1\" \/><\/p>\n<\/section>\n<\/section>\n<p style=\"display: none;margin-bottom: 24px;\"><mp-style-type data-value=\"3\"><\/mp-style-type><\/p>\n<p><\/content>\n<\/div>\n<p><\/body><br \/>\n<\/html><\/p>\n","protected":false},"excerpt":{"rendered":"<p>\u4e0d\u77e5\u9053\u54ea\u91cc\u627e\u6570\u636e\u96c6\uff1fR\u8bed\u8a00\u6709\u7b54\u6848\uff01 \u5c0f\u5e08\u59b9&nbsp;&nbsp;\u751f\u4fe1\u679c&nbsp;&nbsp;2023-06 [&hellip;]<\/p>\n","protected":false},"author":1,"featured_media":0,"comment_status":"closed","ping_status":"","sticky":false,"template":"","format":"standard","meta":{"jetpack_post_was_ever_published":false,"_jetpack_newsletter_access":""},"categories":[1],"tags":[],"jetpack_featured_media_url":"","_links":{"self":[{"href":"http:\/\/www.biocloudservice.com\/wordpress\/index.php?rest_route=\/wp\/v2\/posts\/58967"}],"collection":[{"href":"http:\/\/www.biocloudservice.com\/wordpress\/index.php?rest_route=\/wp\/v2\/posts"}],"about":[{"href":"http:\/\/www.biocloudservice.com\/wordpress\/index.php?rest_route=\/wp\/v2\/types\/post"}],"author":[{"embeddable":true,"href":"http:\/\/www.biocloudservice.com\/wordpress\/index.php?rest_route=\/wp\/v2\/users\/1"}],"replies":[{"embeddable":true,"href":"http:\/\/www.biocloudservice.com\/wordpress\/index.php?rest_route=%2Fwp%2Fv2%2Fcomments&post=58967"}],"version-history":[{"count":1,"href":"http:\/\/www.biocloudservice.com\/wordpress\/index.php?rest_route=\/wp\/v2\/posts\/58967\/revisions"}],"predecessor-version":[{"id":58971,"href":"http:\/\/www.biocloudservice.com\/wordpress\/index.php?rest_route=\/wp\/v2\/posts\/58967\/revisions\/58971"}],"wp:attachment":[{"href":"http:\/\/www.biocloudservice.com\/wordpress\/index.php?rest_route=%2Fwp%2Fv2%2Fmedia&parent=58967"}],"wp:term":[{"taxonomy":"category","embeddable":true,"href":"http:\/\/www.biocloudservice.com\/wordpress\/index.php?rest_route=%2Fwp%2Fv2%2Fcategories&post=58967"},{"taxonomy":"post_tag","embeddable":true,"href":"http:\/\/www.biocloudservice.com\/wordpress\/index.php?rest_route=%2Fwp%2Fv2%2Ftags&post=58967"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}