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\/><\/p>\n<p>FASTA\u683c\u5f0f\u662f\u4e00\u79cd\u5e38\u89c1\u7684\u751f\u7269\u4fe1\u606f\u5b66\u6587\u4ef6\u683c\u5f0f\uff0c\u7528\u4e8e\u5b58\u50a8DNA\u3001RNA\u6216\u86cb\u767d\u8d28\u5e8f\u5217\u3002\u5728\u8fdb\u884c\u751f\u7269\u4fe1\u606f\u5b66\u5206\u6790\u65f6\uff0c\u7ecf\u5e38\u9700\u8981\u5bf9\u5927\u91cf\u7684FASTA\u5e8f\u5217\u8fdb\u884c\u5904\u7406\uff0c\u8fd9\u65f6\u5019\u5c31\u9700\u8981\u4f7f\u7528R\u8bed\u8a00\u8fdb\u884c\u6279\u91cf\u5904\u7406\u3002<\/p>\n<p><br \/><\/p>\n<\/section>\n<section powered-by=\"xiumi.us\" style=\"text-align: left;justify-content: flex-start;display: flex;flex-flow: row nowrap;margin-top: 10px;margin-bottom: 10px;\">\n<section style=\"display: inline-block;vertical-align: top;width: auto;align-self: flex-start;flex: 0 0 auto;background-color: rgba(249, 172, 172, 0.19);min-width: 5%;height: auto;line-height: 1;\">\n<section powered-by=\"xiumi.us\" style=\"justify-content: flex-start;display: flex;flex-flow: row nowrap;\">\n<section 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justify;\">\n<p><br \/><\/p>\n<\/section>\n<\/section>\n<\/section>\n<\/section>\n<\/section>\n<\/section>\n<section style=\"display: inline-block;vertical-align: top;width: auto;flex: 100 100 0%;height: auto;background-color: rgba(249, 172, 172, 0.19);\">\n<section powered-by=\"xiumi.us\" style=\"transform: translate3d(7px, 0px, 0px);margin-top: 3px;\">\n<section style=\"text-align: justify;\">\n<p><strong>\u4e00\u3001\u8bfb\u53d6FASTA\u6587\u4ef6<\/strong><\/p>\n<\/section>\n<\/section>\n<\/section>\n<\/section>\n<section powered-by=\"xiumi.us\">\n<p><br \/><\/p>\n<p>\u6211\u4eec\u53ef\u4ee5\u4f7f\u7528Biostrings\u5305\u4e2d\u7684readDNAStringSet()\u51fd\u6570\u6765\u8bfb\u53d6FASTA\u6587\u4ef6\u3002\u8be5\u51fd\u6570\u53ef\u4ee5\u5c06FASTA\u683c\u5f0f\u7684\u6587\u4ef6\u8bfb\u5165R\u8bed\u8a00\u4e2d\u7684DNAStringSet\u5bf9\u8c61\u4e2d\u3002<\/p>\n<\/section>\n<section class=\"code-snippet__fix code-snippet__js\">\n<ul class=\"code-snippet__line-index code-snippet__js\">\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<\/ul>\n<pre class=\"code-snippet__js\" data-lang=\"r\"><code><span class=\"code-snippet_outer\">```r<\/span><\/code><code><span class=\"code-snippet_outer\">library(Biostrings)<\/span><\/code><code><span class=\"code-snippet_outer\">fasta_sequences <- readDNAStringSet(\"sequences.fasta\")<\/span><\/code><code><span class=\"code-snippet_outer\">```<\/span><\/code><\/pre>\n<\/section>\n<section powered-by=\"xiumi.us\" style=\"text-align: left;justify-content: flex-start;display: flex;flex-flow: row nowrap;margin-top: 10px;margin-bottom: 10px;\">\n<section style=\"display: inline-block;vertical-align: top;width: auto;align-self: flex-start;flex: 0 0 auto;background-color: rgba(249, 172, 172, 0.19);min-width: 5%;height: auto;line-height: 1;\">\n<section powered-by=\"xiumi.us\" style=\"justify-content: flex-start;display: flex;flex-flow: row nowrap;\">\n<section style=\"display: inline-block;vertical-align: top;width: auto;align-self: flex-start;flex: 0 0 auto;min-width: 5%;height: auto;margin-right: 8px;\">\n<section powered-by=\"xiumi.us\" style=\"\">\n<section style=\"display: inline-block;width: 8px;height: 8px;vertical-align: top;overflow: hidden;background-color: rgb(255, 255, 255);box-shadow: rgb(255, 255, 255) 8px 8px 0px;\">\n<section powered-by=\"xiumi.us\" style=\"text-align: justify;\">\n<p><br \/><\/p>\n<\/section>\n<\/section>\n<\/section>\n<\/section>\n<section style=\"display: inline-block;vertical-align: top;width: auto;min-width: 5%;flex: 0 0 auto;height: auto;\">\n<section powered-by=\"xiumi.us\" style=\"text-align: center;\">\n<section style=\"display: inline-block;width: 16px;height: 16px;vertical-align: top;overflow: hidden;background-color: rgb(249, 172, 172);\">\n<section powered-by=\"xiumi.us\" style=\"text-align: justify;\">\n<p><br \/><\/p>\n<\/section>\n<\/section>\n<\/section>\n<\/section>\n<\/section>\n<section powered-by=\"xiumi.us\" style=\"justify-content: flex-start;display: flex;flex-flow: row nowrap;\">\n<section style=\"display: inline-block;vertical-align: top;width: auto;min-width: 5%;flex: 0 0 auto;height: auto;\">\n<section powered-by=\"xiumi.us\" style=\"text-align: center;\">\n<section style=\"display: inline-block;width: 16px;height: 16px;vertical-align: top;overflow: hidden;background-color: rgb(249, 172, 172);\">\n<section powered-by=\"xiumi.us\" style=\"text-align: justify;\">\n<p><br \/><\/p>\n<\/section>\n<\/section>\n<\/section>\n<\/section>\n<section style=\"display: inline-block;vertical-align: top;width: auto;align-self: flex-start;flex: 0 0 auto;min-width: 5%;height: auto;\">\n<section powered-by=\"xiumi.us\" style=\"\">\n<section style=\"display: inline-block;width: 8px;height: 8px;vertical-align: top;overflow: hidden;background-color: rgb(255, 255, 255);box-shadow: rgb(255, 255, 255) 8px 8px 0px;\">\n<section powered-by=\"xiumi.us\" style=\"text-align: justify;\">\n<p><br \/><\/p>\n<\/section>\n<\/section>\n<\/section>\n<\/section>\n<\/section>\n<\/section>\n<section style=\"display: inline-block;vertical-align: top;width: auto;flex: 100 100 0%;height: auto;background-color: rgba(249, 172, 172, 0.19);\">\n<section powered-by=\"xiumi.us\" style=\"transform: translate3d(7px, 0px, 0px);margin-top: 3px;\">\n<section style=\"text-align: justify;\">\n<p><strong>\u4e8c\u3001\u83b7\u53d6\u5e8f\u5217\u4fe1\u606f<\/strong><\/p>\n<\/section>\n<\/section>\n<\/section>\n<\/section>\n<p powered-by=\"xiumi.us\">\u6211\u4eec\u53ef\u4ee5\u4f7f\u7528names()\u51fd\u6570\u83b7\u53d6FASTA\u6587\u4ef6\u4e2d\u7684\u5e8f\u5217\u540d\u79f0\uff0c\u4f7f\u7528length()\u51fd\u6570\u83b7\u53d6\u5e8f\u5217\u957f\u5ea6\uff0c\u4f7f\u7528alphabetFrequency()\u51fd\u6570\u83b7\u53d6\u5e8f\u5217\u4e2d\u5404\u4e2a\u6838\u82f7\u9178\u7684\u9891\u7387\u3002<\/p>\n<section class=\"code-snippet__fix code-snippet__js\">\n<ul class=\"code-snippet__line-index code-snippet__js\">\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<\/ul>\n<pre class=\"code-snippet__js\" data-lang=\"r\"><code><span class=\"code-snippet_outer\">```r<\/span><\/code><code><span class=\"code-snippet_outer\">sequence_names <- names(fasta_sequences)<\/span><\/code><code><span class=\"code-snippet_outer\">sequence_lengths <- length(fasta_sequences)<\/span><\/code><code><span class=\"code-snippet_outer\">sequence_frequency <- alphabetFrequency(fasta_sequences)<\/span><\/code><code><span class=\"code-snippet_outer\">```<\/span><\/code><\/pre>\n<\/section>\n<section powered-by=\"xiumi.us\" style=\"text-align: left;justify-content: flex-start;display: flex;flex-flow: row nowrap;margin-top: 10px;margin-bottom: 10px;\">\n<section style=\"display: inline-block;vertical-align: top;width: auto;align-self: flex-start;flex: 0 0 auto;background-color: rgba(249, 172, 172, 0.19);min-width: 5%;height: auto;line-height: 1;\">\n<section powered-by=\"xiumi.us\" style=\"justify-content: flex-start;display: flex;flex-flow: row nowrap;\">\n<section style=\"display: inline-block;vertical-align: top;width: auto;align-self: flex-start;flex: 0 0 auto;min-width: 5%;height: auto;margin-right: 8px;\">\n<section powered-by=\"xiumi.us\" style=\"\">\n<section style=\"display: inline-block;width: 8px;height: 8px;vertical-align: top;overflow: hidden;background-color: rgb(255, 255, 255);box-shadow: rgb(255, 255, 255) 8px 8px 0px;\">\n<section powered-by=\"xiumi.us\" style=\"text-align: justify;\">\n<p><br \/><\/p>\n<\/section>\n<\/section>\n<\/section>\n<\/section>\n<section style=\"display: inline-block;vertical-align: top;width: auto;min-width: 5%;flex: 0 0 auto;height: auto;\">\n<section powered-by=\"xiumi.us\" style=\"text-align: center;\">\n<section style=\"display: inline-block;width: 16px;height: 16px;vertical-align: top;overflow: hidden;background-color: rgb(249, 172, 172);\">\n<section powered-by=\"xiumi.us\" style=\"text-align: justify;\">\n<p><br \/><\/p>\n<\/section>\n<\/section>\n<\/section>\n<\/section>\n<\/section>\n<section powered-by=\"xiumi.us\" style=\"justify-content: flex-start;display: flex;flex-flow: row nowrap;\">\n<section style=\"display: inline-block;vertical-align: top;width: auto;min-width: 5%;flex: 0 0 auto;height: auto;\">\n<section powered-by=\"xiumi.us\" style=\"text-align: center;\">\n<section style=\"display: inline-block;width: 16px;height: 16px;vertical-align: top;overflow: hidden;background-color: rgb(249, 172, 172);\">\n<section powered-by=\"xiumi.us\" style=\"text-align: justify;\">\n<p><br \/><\/p>\n<\/section>\n<\/section>\n<\/section>\n<\/section>\n<section style=\"display: inline-block;vertical-align: top;width: auto;align-self: flex-start;flex: 0 0 auto;min-width: 5%;height: auto;\">\n<section powered-by=\"xiumi.us\" style=\"\">\n<section style=\"display: inline-block;width: 8px;height: 8px;vertical-align: top;overflow: hidden;background-color: rgb(255, 255, 255);box-shadow: rgb(255, 255, 255) 8px 8px 0px;\">\n<section powered-by=\"xiumi.us\" style=\"text-align: justify;\">\n<p><br \/><\/p>\n<\/section>\n<\/section>\n<\/section>\n<\/section>\n<\/section>\n<\/section>\n<section style=\"display: inline-block;vertical-align: top;width: auto;flex: 100 100 0%;height: auto;background-color: rgba(249, 172, 172, 0.19);\">\n<section powered-by=\"xiumi.us\" style=\"transform: translate3d(7px, 0px, 0px);margin-top: 3px;\">\n<section style=\"text-align: justify;\">\n<p><strong>\u4e09\u3001\u5e8f\u5217\u64cd\u4f5c<\/strong><\/p>\n<\/section>\n<\/section>\n<\/section>\n<\/section>\n<p powered-by=\"xiumi.us\">\u6211\u4eec\u53ef\u4ee5\u4f7f\u7528subseq()\u51fd\u6570\u83b7\u53d6\u5e8f\u5217\u7684\u5b50\u5e8f\u5217\uff0c\u4f7f\u7528reverseComplement()\u51fd\u6570\u83b7\u53d6\u5e8f\u5217\u7684\u53cd\u5411\u4e92\u8865\u5e8f\u5217\uff0c\u4f7f\u7528translate()\u51fd\u6570\u5c06DNA\u5e8f\u5217\u7ffb\u8bd1\u6210\u86cb\u767d\u8d28\u5e8f\u5217\u3002<\/p>\n<section class=\"code-snippet__fix code-snippet__js\">\n<ul class=\"code-snippet__line-index code-snippet__js\">\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<\/ul>\n<pre class=\"code-snippet__js\" data-lang=\"r\"><code><span class=\"code-snippet_outer\">```r<\/span><\/code><code><span class=\"code-snippet_outer\"># \u83b7\u53d6\u5e8f\u5217\u7684\u5b50\u5e8f\u5217<\/span><\/code><code><span class=\"code-snippet_outer\">sub_sequence <- subseq(fasta_sequences[[1]], start=1, end=10)<\/span><\/code><code><span class=\"code-snippet_outer\"><br \/><\/span><\/code><code><span class=\"code-snippet_outer\"># \u83b7\u53d6\u5e8f\u5217\u7684\u53cd\u5411\u4e92\u8865\u5e8f\u5217<\/span><\/code><code><span class=\"code-snippet_outer\">reverse_complement <- reverseComplement(fasta_sequences[[1]])<\/span><\/code><code><span class=\"code-snippet_outer\"><br \/><\/span><\/code><code><span class=\"code-snippet_outer\"># \u5c06DNA\u5e8f\u5217\u7ffb\u8bd1\u6210\u86cb\u767d\u8d28\u5e8f\u5217<\/span><\/code><code><span class=\"code-snippet_outer\">protein_sequence <- translate(fasta_sequences[[1]])<\/span><\/code><code><span class=\"code-snippet_outer\">```<\/span><\/code><\/pre>\n<\/section>\n<section powered-by=\"xiumi.us\" style=\"text-align: left;justify-content: flex-start;display: flex;flex-flow: row nowrap;margin-top: 10px;margin-bottom: 10px;\">\n<section style=\"display: inline-block;vertical-align: top;width: auto;align-self: flex-start;flex: 0 0 auto;background-color: rgba(249, 172, 172, 0.19);min-width: 5%;height: auto;line-height: 1;\">\n<section powered-by=\"xiumi.us\" style=\"justify-content: flex-start;display: flex;flex-flow: row nowrap;\">\n<section style=\"display: inline-block;vertical-align: top;width: auto;align-self: flex-start;flex: 0 0 auto;min-width: 5%;height: auto;margin-right: 8px;\">\n<section powered-by=\"xiumi.us\" style=\"\">\n<section style=\"display: inline-block;width: 8px;height: 8px;vertical-align: top;overflow: hidden;background-color: rgb(255, 255, 255);box-shadow: rgb(255, 255, 255) 8px 8px 0px;\">\n<section powered-by=\"xiumi.us\" style=\"text-align: justify;\">\n<p><br \/><\/p>\n<\/section>\n<\/section>\n<\/section>\n<\/section>\n<section style=\"display: inline-block;vertical-align: top;width: auto;min-width: 5%;flex: 0 0 auto;height: auto;\">\n<section powered-by=\"xiumi.us\" style=\"text-align: center;\">\n<section style=\"display: inline-block;width: 16px;height: 16px;vertical-align: top;overflow: hidden;background-color: rgb(249, 172, 172);\">\n<section powered-by=\"xiumi.us\" style=\"text-align: justify;\">\n<p><br \/><\/p>\n<\/section>\n<\/section>\n<\/section>\n<\/section>\n<\/section>\n<section powered-by=\"xiumi.us\" style=\"justify-content: flex-start;display: flex;flex-flow: row nowrap;\">\n<section style=\"display: inline-block;vertical-align: top;width: auto;min-width: 5%;flex: 0 0 auto;height: auto;\">\n<section powered-by=\"xiumi.us\" style=\"text-align: center;\">\n<section style=\"display: inline-block;width: 16px;height: 16px;vertical-align: top;overflow: hidden;background-color: rgb(249, 172, 172);\">\n<section powered-by=\"xiumi.us\" style=\"text-align: justify;\">\n<p><br \/><\/p>\n<\/section>\n<\/section>\n<\/section>\n<\/section>\n<section style=\"display: inline-block;vertical-align: top;width: auto;align-self: flex-start;flex: 0 0 auto;min-width: 5%;height: auto;\">\n<section powered-by=\"xiumi.us\" style=\"\">\n<section style=\"display: inline-block;width: 8px;height: 8px;vertical-align: top;overflow: hidden;background-color: rgb(255, 255, 255);box-shadow: rgb(255, 255, 255) 8px 8px 0px;\">\n<section powered-by=\"xiumi.us\" style=\"text-align: justify;\">\n<p><br \/><\/p>\n<\/section>\n<\/section>\n<\/section>\n<\/section>\n<\/section>\n<\/section>\n<section style=\"display: inline-block;vertical-align: top;width: auto;flex: 100 100 0%;height: auto;background-color: rgba(249, 172, 172, 0.19);\">\n<section powered-by=\"xiumi.us\" style=\"transform: translate3d(7px, 0px, 0px);margin-top: 3px;\">\n<section style=\"text-align: justify;\">\n<p><strong>\u56db\u3001\u5e8f\u5217\u6bd4\u5bf9<\/strong><\/p>\n<\/section>\n<\/section>\n<\/section>\n<\/section>\n<p powered-by=\"xiumi.us\">\u6211\u4eec\u53ef\u4ee5\u4f7f\u7528pairwiseAlignment()\u51fd\u6570\u8fdb\u884c\u5e8f\u5217\u6bd4\u5bf9\uff0c\u4f7f\u7528needlemanWunsch()\u51fd\u6570\u8fdb\u884c\u5168\u5c40\u6bd4\u5bf9\uff0c\u4f7f\u7528smithWaterman()\u51fd\u6570\u8fdb\u884c\u5c40\u90e8\u6bd4\u5bf9\u3002<\/p>\n<section class=\"code-snippet__fix code-snippet__js\">\n<ul class=\"code-snippet__line-index code-snippet__js\">\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<\/ul>\n<pre class=\"code-snippet__js\" data-lang=\"r\"><code><span class=\"code-snippet_outer\">```r<\/span><\/code><code><span class=\"code-snippet_outer\"># \u4e24\u4e2a\u5e8f\u5217\u7684\u6bd4\u5bf9<\/span><\/code><code><span class=\"code-snippet_outer\">alignment <- pairwiseAlignment(fasta_sequences[[1]], fasta_sequences[[2]])<\/span><\/code><code><span class=\"code-snippet_outer\"><br \/><\/span><\/code><code><span class=\"code-snippet_outer\"># \u5168\u5c40\u6bd4\u5bf9<\/span><\/code><code><span class=\"code-snippet_outer\">global_alignment <- needlemanWunsch(fasta_sequences[[1]], fasta_sequences[[2]])<\/span><\/code><code><span class=\"code-snippet_outer\"><br \/><\/span><\/code><code><span class=\"code-snippet_outer\"># \u5c40\u90e8\u6bd4\u5bf9<\/span><\/code><code><span class=\"code-snippet_outer\">local_alignment <- smithWaterman(fasta_sequences[[1]], fasta_sequences[[2]])<\/span><\/code><code><span class=\"code-snippet_outer\">```<\/span><\/code><\/pre>\n<\/section>\n<section powered-by=\"xiumi.us\" style=\"text-align: left;justify-content: flex-start;display: flex;flex-flow: row nowrap;margin-top: 10px;margin-bottom: 10px;\">\n<section style=\"display: inline-block;vertical-align: top;width: auto;align-self: flex-start;flex: 0 0 auto;background-color: rgba(249, 172, 172, 0.19);min-width: 5%;height: auto;line-height: 1;\">\n<section powered-by=\"xiumi.us\" style=\"justify-content: flex-start;display: flex;flex-flow: row nowrap;\">\n<section style=\"display: inline-block;vertical-align: top;width: auto;align-self: flex-start;flex: 0 0 auto;min-width: 5%;height: auto;margin-right: 8px;\">\n<section powered-by=\"xiumi.us\" style=\"\">\n<section style=\"display: inline-block;width: 8px;height: 8px;vertical-align: top;overflow: hidden;background-color: rgb(255, 255, 255);box-shadow: rgb(255, 255, 255) 8px 8px 0px;\">\n<section powered-by=\"xiumi.us\" style=\"text-align: justify;\">\n<p><br \/><\/p>\n<\/section>\n<\/section>\n<\/section>\n<\/section>\n<section style=\"display: inline-block;vertical-align: top;width: auto;min-width: 5%;flex: 0 0 auto;height: auto;\">\n<section powered-by=\"xiumi.us\" style=\"text-align: center;\">\n<section style=\"display: inline-block;width: 16px;height: 16px;vertical-align: top;overflow: hidden;background-color: rgb(249, 172, 172);\">\n<section powered-by=\"xiumi.us\" style=\"text-align: justify;\">\n<p><br \/><\/p>\n<\/section>\n<\/section>\n<\/section>\n<\/section>\n<\/section>\n<section powered-by=\"xiumi.us\" style=\"justify-content: flex-start;display: flex;flex-flow: row nowrap;\">\n<section style=\"display: inline-block;vertical-align: top;width: auto;min-width: 5%;flex: 0 0 auto;height: auto;\">\n<section powered-by=\"xiumi.us\" style=\"text-align: center;\">\n<section style=\"display: inline-block;width: 16px;height: 16px;vertical-align: top;overflow: hidden;background-color: rgb(249, 172, 172);\">\n<section powered-by=\"xiumi.us\" style=\"text-align: justify;\">\n<p><br \/><\/p>\n<\/section>\n<\/section>\n<\/section>\n<\/section>\n<section style=\"display: inline-block;vertical-align: top;width: auto;align-self: flex-start;flex: 0 0 auto;min-width: 5%;height: auto;\">\n<section powered-by=\"xiumi.us\" style=\"\">\n<section style=\"display: inline-block;width: 8px;height: 8px;vertical-align: top;overflow: hidden;background-color: rgb(255, 255, 255);box-shadow: rgb(255, 255, 255) 8px 8px 0px;\">\n<section powered-by=\"xiumi.us\" style=\"text-align: justify;\">\n<p><br \/><\/p>\n<\/section>\n<\/section>\n<\/section>\n<\/section>\n<\/section>\n<\/section>\n<section style=\"display: inline-block;vertical-align: top;width: auto;flex: 100 100 0%;height: auto;background-color: rgba(249, 172, 172, 0.19);\">\n<section powered-by=\"xiumi.us\" style=\"transform: translate3d(7px, 0px, 0px);margin-top: 3px;\">\n<section style=\"text-align: justify;\">\n<p><strong>\u4e94\u3001\u5e8f\u5217\u5206\u6790<\/strong><\/p>\n<\/section>\n<\/section>\n<\/section>\n<\/section>\n<p powered-by=\"xiumi.us\">\u6211\u4eec\u53ef\u4ee5\u4f7f\u7528Biostrings\u5305\u4e2d\u7684\u591a\u79cd\u51fd\u6570\u8fdb\u884c\u5e8f\u5217\u5206\u6790\uff0c\u5982countPattern()\u51fd\u6570\u8ba1\u7b97\u5e8f\u5217\u4e2d\u67d0\u4e2a\u6a21\u5f0f\u7684\u51fa\u73b0\u6b21\u6570\uff0cmatchPattern()\u51fd\u6570\u67e5\u627e\u5e8f\u5217\u4e2d\u67d0\u4e2a\u6a21\u5f0f\u7684\u4f4d\u7f6e\uff0cfindPalindromes()\u51fd\u6570\u67e5\u627e\u5e8f\u5217\u4e2d\u7684\u56de\u6587\u5e8f\u5217\uff0cfindMotifs()\u51fd\u6570\u67e5\u627e\u5e8f\u5217\u4e2d\u7684\u4fdd\u5b88\u5e8f\u5217\u7b49\u3002<\/p>\n<section class=\"code-snippet__fix code-snippet__js\">\n<ul class=\"code-snippet__line-index code-snippet__js\">\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<\/ul>\n<pre class=\"code-snippet__js\" data-lang=\"r\"><code><span class=\"code-snippet_outer\">```r<\/span><\/code><code><span class=\"code-snippet_outer\"># \u8ba1\u7b97\u5e8f\u5217\u4e2d\u67d0\u4e2a\u6a21\u5f0f\u7684\u51fa\u73b0\u6b21\u6570<\/span><\/code><code><span class=\"code-snippet_outer\">pattern_count <- countPattern(fasta_sequences[[1]], \"AT\")<\/span><\/code><code><span class=\"code-snippet_outer\"><br \/><\/span><\/code><code><span class=\"code-snippet_outer\"># \u67e5\u627e\u5e8f\u5217\u4e2d\u67d0\u4e2a\u6a21\u5f0f\u7684\u4f4d\u7f6e<\/span><\/code><code><span class=\"code-snippet_outer\">pattern_position <- matchPattern(fasta_sequences[[1]], \"AT\")<\/span><\/code><code><span class=\"code-snippet_outer\"><br \/><\/span><\/code><code><span class=\"code-snippet_outer\"># \u67e5\u627e\u5e8f\u5217\u4e2d\u7684\u56de\u6587\u5e8f\u5217<\/span><\/code><code><span class=\"code-snippet_outer\">palindromes <- findPalindromes(fasta_sequences[[1]])<\/span><\/code><code><span class=\"code-snippet_outer\"><br \/><\/span><\/code><code><span class=\"code-snippet_outer\"># \u67e5\u627e\u5e8f\u5217\u4e2d\u7684\u4fdd\u5b88\u5e8f\u5217<\/span><\/code><code><span class=\"code-snippet_outer\">motifs <- findMotifs(fasta_sequences[[1]], PWM)<\/span><\/code><code><span class=\"code-snippet_outer\">```<\/span><\/code><\/pre>\n<\/section>\n<section powered-by=\"xiumi.us\" style=\"text-align: left;justify-content: flex-start;display: flex;flex-flow: row nowrap;margin-top: 10px;margin-bottom: 10px;\">\n<section style=\"display: inline-block;vertical-align: top;width: auto;align-self: flex-start;flex: 0 0 auto;background-color: rgba(249, 172, 172, 0.19);min-width: 5%;height: auto;line-height: 1;\">\n<section powered-by=\"xiumi.us\" style=\"justify-content: flex-start;display: flex;flex-flow: row nowrap;\">\n<section style=\"display: inline-block;vertical-align: top;width: auto;align-self: flex-start;flex: 0 0 auto;min-width: 5%;height: auto;margin-right: 8px;\">\n<section powered-by=\"xiumi.us\" style=\"\">\n<section style=\"display: inline-block;width: 8px;height: 8px;vertical-align: top;overflow: hidden;background-color: rgb(255, 255, 255);box-shadow: rgb(255, 255, 255) 8px 8px 0px;\">\n<section powered-by=\"xiumi.us\" style=\"text-align: justify;\">\n<p><br \/><\/p>\n<\/section>\n<\/section>\n<\/section>\n<\/section>\n<section style=\"display: inline-block;vertical-align: top;width: auto;min-width: 5%;flex: 0 0 auto;height: auto;\">\n<section powered-by=\"xiumi.us\" style=\"text-align: center;\">\n<section style=\"display: inline-block;width: 16px;height: 16px;vertical-align: top;overflow: hidden;background-color: rgb(249, 172, 172);\">\n<section powered-by=\"xiumi.us\" style=\"text-align: justify;\">\n<p><br \/><\/p>\n<\/section>\n<\/section>\n<\/section>\n<\/section>\n<\/section>\n<section powered-by=\"xiumi.us\" style=\"justify-content: flex-start;display: flex;flex-flow: row nowrap;\">\n<section style=\"display: inline-block;vertical-align: top;width: auto;min-width: 5%;flex: 0 0 auto;height: auto;\">\n<section powered-by=\"xiumi.us\" style=\"text-align: center;\">\n<section style=\"display: inline-block;width: 16px;height: 16px;vertical-align: top;overflow: hidden;background-color: rgb(249, 172, 172);\">\n<section powered-by=\"xiumi.us\" style=\"text-align: justify;\">\n<p><br \/><\/p>\n<\/section>\n<\/section>\n<\/section>\n<\/section>\n<section style=\"display: inline-block;vertical-align: top;width: auto;align-self: flex-start;flex: 0 0 auto;min-width: 5%;height: auto;\">\n<section powered-by=\"xiumi.us\" style=\"\">\n<section style=\"display: inline-block;width: 8px;height: 8px;vertical-align: top;overflow: hidden;background-color: rgb(255, 255, 255);box-shadow: rgb(255, 255, 255) 8px 8px 0px;\">\n<section powered-by=\"xiumi.us\" style=\"text-align: justify;\">\n<p><br \/><\/p>\n<\/section>\n<\/section>\n<\/section>\n<\/section>\n<\/section>\n<\/section>\n<section style=\"display: inline-block;vertical-align: top;width: auto;flex: 100 100 0%;height: auto;background-color: rgba(249, 172, 172, 0.19);\">\n<section powered-by=\"xiumi.us\" style=\"transform: translate3d(7px, 0px, 0px);margin-top: 3px;\">\n<section style=\"text-align: justify;\">\n<p><strong>\u603b\u7ed3<\/strong><\/p>\n<\/section>\n<\/section>\n<\/section>\n<\/section>\n<section powered-by=\"xiumi.us\">\n<p>\u901a\u8fc7\u4ee5\u4e0a\u4ecb\u7ecd\uff0c\u6211\u4eec\u53ef\u4ee5\u770b\u5230R\u8bed\u8a00\u5728\u5904\u7406FASTA\u5e8f\u5217\u65b9\u9762\u7684\u5f3a\u5927\u529f\u80fd\u548c\u7075\u6d3b\u6027\u3002\u901a\u8fc7\u5b66\u4e60R\u8bed\u8a00\uff0c\u6211\u4eec\u53ef\u4ee5\u66f4\u597d\u5730\u7406\u89e3\u751f\u7269\u5e8f\u5217\u4e4b\u95f4\u7684\u5173\u7cfb\uff0c\u4ece\u800c\u505a\u51fa\u66f4\u597d\u7684\u751f\u7269\u4fe1\u606f\u5b66\u5206\u6790<\/p>\n<p><br 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class=\"rich_media_meta rich_media_meta_text\">2023-07-13 19:00:16<\/em><\/div>\n<p><content><\/p>\n<div class=\"reprint\">\n<p>\u8f6c\u81ea\u516c\u4f17\u53f7\uff1aR\u8bed\u8a00\u5b66\u5f92<br \/><a href=\"http:\/\/mp.weixin.qq.com\/s?__biz=Mzg5MDk3Mzg4OA==&mid=2247484447&idx=1&sn=e0706526216cdd78d85fa382f791deca\" target=\"_blank\" title=\"\u9605\u8bfb\u539f\u6587\" rel=\"noopener\">http:\/\/mp.weixin.qq.com\/s?__biz=Mzg5MDk3Mzg4OA==&mid=2247484447&idx=1&sn=e0706526216cdd78d85fa382f791deca<\/a><\/p>\n<\/div>\n<section style=\"font-size: 16px;letter-spacing: normal;white-space: normal;caret-color: rgb(0, 0, 0);color: rgb(0, 0, 0);margin-bottom: 24px;\">\n<section powered-by=\"xiumi.us\" style=\"text-align: left;justify-content: flex-start;display: flex;flex-flow: row nowrap;margin-top: 20px;margin-bottom: 25px;\">\n<section style=\"display: inline-block;width: auto;vertical-align: top;align-self: flex-start;flex: 0 0 auto;min-width: 5%;height: auto;background-color: rgb(249, 172, 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\/><\/p>\n<p>FASTA\u683c\u5f0f\u662f\u4e00\u79cd\u5e38\u89c1\u7684\u751f\u7269\u4fe1\u606f\u5b66\u6587\u4ef6\u683c\u5f0f\uff0c\u7528\u4e8e\u5b58\u50a8DNA\u3001RNA\u6216\u86cb\u767d\u8d28\u5e8f\u5217\u3002\u5728\u8fdb\u884c\u751f\u7269\u4fe1\u606f\u5b66\u5206\u6790\u65f6\uff0c\u7ecf\u5e38\u9700\u8981\u5bf9\u5927\u91cf\u7684FASTA\u5e8f\u5217\u8fdb\u884c\u5904\u7406\uff0c\u8fd9\u65f6\u5019\u5c31\u9700\u8981\u4f7f\u7528R\u8bed\u8a00\u8fdb\u884c\u6279\u91cf\u5904\u7406\u3002<\/p>\n<p><br \/><\/p>\n<\/section>\n<section powered-by=\"xiumi.us\" style=\"text-align: left;justify-content: flex-start;display: flex;flex-flow: row nowrap;margin-top: 10px;margin-bottom: 10px;\">\n<section style=\"display: inline-block;vertical-align: top;width: auto;align-self: flex-start;flex: 0 0 auto;background-color: rgba(249, 172, 172, 0.19);min-width: 5%;height: auto;line-height: 1;\">\n<section powered-by=\"xiumi.us\" style=\"justify-content: flex-start;display: flex;flex-flow: row nowrap;\">\n<section style=\"display: inline-block;vertical-align: top;width: auto;align-self: flex-start;flex: 0 0 auto;min-width: 5%;height: auto;margin-right: 8px;\">\n<section powered-by=\"xiumi.us\" style=\"\">\n<section style=\"display: inline-block;width: 8px;height: 8px;vertical-align: top;overflow: hidden;background-color: rgb(255, 255, 255);box-shadow: rgb(255, 255, 255) 8px 8px 0px;\">\n<section powered-by=\"xiumi.us\" style=\"text-align: justify;\">\n<p><br \/><\/p>\n<\/section>\n<\/section>\n<\/section>\n<\/section>\n<section style=\"display: inline-block;vertical-align: top;width: auto;min-width: 5%;flex: 0 0 auto;height: auto;\">\n<section powered-by=\"xiumi.us\" style=\"text-align: center;\">\n<section style=\"display: inline-block;width: 16px;height: 16px;vertical-align: top;overflow: hidden;background-color: rgb(249, 172, 172);\">\n<section powered-by=\"xiumi.us\" style=\"text-align: justify;\">\n<p><br \/><\/p>\n<\/section>\n<\/section>\n<\/section>\n<\/section>\n<\/section>\n<section powered-by=\"xiumi.us\" style=\"justify-content: flex-start;display: flex;flex-flow: row nowrap;\">\n<section style=\"display: inline-block;vertical-align: top;width: auto;min-width: 5%;flex: 0 0 auto;height: auto;\">\n<section powered-by=\"xiumi.us\" style=\"text-align: center;\">\n<section style=\"display: inline-block;width: 16px;height: 16px;vertical-align: top;overflow: hidden;background-color: rgb(249, 172, 172);\">\n<section powered-by=\"xiumi.us\" style=\"text-align: justify;\">\n<p><br \/><\/p>\n<\/section>\n<\/section>\n<\/section>\n<\/section>\n<section style=\"display: inline-block;vertical-align: top;width: auto;align-self: flex-start;flex: 0 0 auto;min-width: 5%;height: auto;\">\n<section powered-by=\"xiumi.us\" style=\"\">\n<section style=\"display: inline-block;width: 8px;height: 8px;vertical-align: top;overflow: hidden;background-color: rgb(255, 255, 255);box-shadow: rgb(255, 255, 255) 8px 8px 0px;\">\n<section powered-by=\"xiumi.us\" style=\"text-align: justify;\">\n<p><br \/><\/p>\n<\/section>\n<\/section>\n<\/section>\n<\/section>\n<\/section>\n<\/section>\n<section style=\"display: inline-block;vertical-align: top;width: auto;flex: 100 100 0%;height: auto;background-color: rgba(249, 172, 172, 0.19);\">\n<section powered-by=\"xiumi.us\" style=\"transform: translate3d(7px, 0px, 0px);margin-top: 3px;\">\n<section style=\"text-align: justify;\">\n<p><strong>\u4e00\u3001\u8bfb\u53d6FASTA\u6587\u4ef6<\/strong><\/p>\n<\/section>\n<\/section>\n<\/section>\n<\/section>\n<section powered-by=\"xiumi.us\">\n<p><br \/><\/p>\n<p>\u6211\u4eec\u53ef\u4ee5\u4f7f\u7528Biostrings\u5305\u4e2d\u7684readDNAStringSet()\u51fd\u6570\u6765\u8bfb\u53d6FASTA\u6587\u4ef6\u3002\u8be5\u51fd\u6570\u53ef\u4ee5\u5c06FASTA\u683c\u5f0f\u7684\u6587\u4ef6\u8bfb\u5165R\u8bed\u8a00\u4e2d\u7684DNAStringSet\u5bf9\u8c61\u4e2d\u3002<\/p>\n<\/section>\n<section class=\"code-snippet__fix code-snippet__js\">\n<ul class=\"code-snippet__line-index code-snippet__js\">\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<\/ul>\n<pre class=\"code-snippet__js\" data-lang=\"r\"><code><span class=\"code-snippet_outer\">```r<\/span><\/code><code><span class=\"code-snippet_outer\">library(Biostrings)<\/span><\/code><code><span class=\"code-snippet_outer\">fasta_sequences <- readDNAStringSet(\"sequences.fasta\")<\/span><\/code><code><span class=\"code-snippet_outer\">```<\/span><\/code><\/pre>\n<\/section>\n<section powered-by=\"xiumi.us\" style=\"text-align: left;justify-content: flex-start;display: flex;flex-flow: row nowrap;margin-top: 10px;margin-bottom: 10px;\">\n<section style=\"display: inline-block;vertical-align: top;width: auto;align-self: flex-start;flex: 0 0 auto;background-color: rgba(249, 172, 172, 0.19);min-width: 5%;height: auto;line-height: 1;\">\n<section powered-by=\"xiumi.us\" style=\"justify-content: flex-start;display: flex;flex-flow: row nowrap;\">\n<section style=\"display: inline-block;vertical-align: top;width: auto;align-self: flex-start;flex: 0 0 auto;min-width: 5%;height: auto;margin-right: 8px;\">\n<section powered-by=\"xiumi.us\" style=\"\">\n<section style=\"display: inline-block;width: 8px;height: 8px;vertical-align: top;overflow: hidden;background-color: rgb(255, 255, 255);box-shadow: rgb(255, 255, 255) 8px 8px 0px;\">\n<section powered-by=\"xiumi.us\" style=\"text-align: justify;\">\n<p><br \/><\/p>\n<\/section>\n<\/section>\n<\/section>\n<\/section>\n<section style=\"display: inline-block;vertical-align: top;width: auto;min-width: 5%;flex: 0 0 auto;height: auto;\">\n<section powered-by=\"xiumi.us\" style=\"text-align: center;\">\n<section style=\"display: inline-block;width: 16px;height: 16px;vertical-align: top;overflow: hidden;background-color: rgb(249, 172, 172);\">\n<section powered-by=\"xiumi.us\" style=\"text-align: justify;\">\n<p><br \/><\/p>\n<\/section>\n<\/section>\n<\/section>\n<\/section>\n<\/section>\n<section powered-by=\"xiumi.us\" style=\"justify-content: flex-start;display: flex;flex-flow: row nowrap;\">\n<section style=\"display: inline-block;vertical-align: top;width: auto;min-width: 5%;flex: 0 0 auto;height: auto;\">\n<section powered-by=\"xiumi.us\" style=\"text-align: center;\">\n<section style=\"display: inline-block;width: 16px;height: 16px;vertical-align: top;overflow: hidden;background-color: rgb(249, 172, 172);\">\n<section powered-by=\"xiumi.us\" style=\"text-align: justify;\">\n<p><br \/><\/p>\n<\/section>\n<\/section>\n<\/section>\n<\/section>\n<section style=\"display: inline-block;vertical-align: top;width: auto;align-self: flex-start;flex: 0 0 auto;min-width: 5%;height: auto;\">\n<section powered-by=\"xiumi.us\" style=\"\">\n<section style=\"display: inline-block;width: 8px;height: 8px;vertical-align: top;overflow: hidden;background-color: rgb(255, 255, 255);box-shadow: rgb(255, 255, 255) 8px 8px 0px;\">\n<section powered-by=\"xiumi.us\" style=\"text-align: justify;\">\n<p><br \/><\/p>\n<\/section>\n<\/section>\n<\/section>\n<\/section>\n<\/section>\n<\/section>\n<section style=\"display: inline-block;vertical-align: top;width: auto;flex: 100 100 0%;height: auto;background-color: rgba(249, 172, 172, 0.19);\">\n<section powered-by=\"xiumi.us\" style=\"transform: translate3d(7px, 0px, 0px);margin-top: 3px;\">\n<section style=\"text-align: justify;\">\n<p><strong>\u4e8c\u3001\u83b7\u53d6\u5e8f\u5217\u4fe1\u606f<\/strong><\/p>\n<\/section>\n<\/section>\n<\/section>\n<\/section>\n<p powered-by=\"xiumi.us\">\u6211\u4eec\u53ef\u4ee5\u4f7f\u7528names()\u51fd\u6570\u83b7\u53d6FASTA\u6587\u4ef6\u4e2d\u7684\u5e8f\u5217\u540d\u79f0\uff0c\u4f7f\u7528length()\u51fd\u6570\u83b7\u53d6\u5e8f\u5217\u957f\u5ea6\uff0c\u4f7f\u7528alphabetFrequency()\u51fd\u6570\u83b7\u53d6\u5e8f\u5217\u4e2d\u5404\u4e2a\u6838\u82f7\u9178\u7684\u9891\u7387\u3002<\/p>\n<section class=\"code-snippet__fix code-snippet__js\">\n<ul class=\"code-snippet__line-index code-snippet__js\">\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<\/ul>\n<pre class=\"code-snippet__js\" data-lang=\"r\"><code><span class=\"code-snippet_outer\">```r<\/span><\/code><code><span class=\"code-snippet_outer\">sequence_names <- names(fasta_sequences)<\/span><\/code><code><span class=\"code-snippet_outer\">sequence_lengths <- length(fasta_sequences)<\/span><\/code><code><span class=\"code-snippet_outer\">sequence_frequency <- alphabetFrequency(fasta_sequences)<\/span><\/code><code><span class=\"code-snippet_outer\">```<\/span><\/code><\/pre>\n<\/section>\n<section powered-by=\"xiumi.us\" style=\"text-align: left;justify-content: flex-start;display: flex;flex-flow: row nowrap;margin-top: 10px;margin-bottom: 10px;\">\n<section style=\"display: inline-block;vertical-align: top;width: auto;align-self: flex-start;flex: 0 0 auto;background-color: rgba(249, 172, 172, 0.19);min-width: 5%;height: auto;line-height: 1;\">\n<section powered-by=\"xiumi.us\" style=\"justify-content: flex-start;display: flex;flex-flow: row nowrap;\">\n<section style=\"display: inline-block;vertical-align: top;width: auto;align-self: flex-start;flex: 0 0 auto;min-width: 5%;height: auto;margin-right: 8px;\">\n<section powered-by=\"xiumi.us\" style=\"\">\n<section style=\"display: inline-block;width: 8px;height: 8px;vertical-align: top;overflow: hidden;background-color: rgb(255, 255, 255);box-shadow: rgb(255, 255, 255) 8px 8px 0px;\">\n<section powered-by=\"xiumi.us\" style=\"text-align: justify;\">\n<p><br \/><\/p>\n<\/section>\n<\/section>\n<\/section>\n<\/section>\n<section style=\"display: inline-block;vertical-align: top;width: auto;min-width: 5%;flex: 0 0 auto;height: auto;\">\n<section powered-by=\"xiumi.us\" style=\"text-align: center;\">\n<section style=\"display: inline-block;width: 16px;height: 16px;vertical-align: top;overflow: hidden;background-color: rgb(249, 172, 172);\">\n<section powered-by=\"xiumi.us\" style=\"text-align: justify;\">\n<p><br \/><\/p>\n<\/section>\n<\/section>\n<\/section>\n<\/section>\n<\/section>\n<section powered-by=\"xiumi.us\" style=\"justify-content: flex-start;display: flex;flex-flow: row nowrap;\">\n<section style=\"display: inline-block;vertical-align: top;width: auto;min-width: 5%;flex: 0 0 auto;height: auto;\">\n<section powered-by=\"xiumi.us\" style=\"text-align: center;\">\n<section style=\"display: inline-block;width: 16px;height: 16px;vertical-align: top;overflow: hidden;background-color: rgb(249, 172, 172);\">\n<section powered-by=\"xiumi.us\" style=\"text-align: justify;\">\n<p><br \/><\/p>\n<\/section>\n<\/section>\n<\/section>\n<\/section>\n<section style=\"display: inline-block;vertical-align: top;width: auto;align-self: flex-start;flex: 0 0 auto;min-width: 5%;height: auto;\">\n<section powered-by=\"xiumi.us\" style=\"\">\n<section style=\"display: inline-block;width: 8px;height: 8px;vertical-align: top;overflow: hidden;background-color: rgb(255, 255, 255);box-shadow: rgb(255, 255, 255) 8px 8px 0px;\">\n<section powered-by=\"xiumi.us\" style=\"text-align: justify;\">\n<p><br \/><\/p>\n<\/section>\n<\/section>\n<\/section>\n<\/section>\n<\/section>\n<\/section>\n<section style=\"display: inline-block;vertical-align: top;width: auto;flex: 100 100 0%;height: auto;background-color: rgba(249, 172, 172, 0.19);\">\n<section powered-by=\"xiumi.us\" style=\"transform: translate3d(7px, 0px, 0px);margin-top: 3px;\">\n<section style=\"text-align: justify;\">\n<p><strong>\u4e09\u3001\u5e8f\u5217\u64cd\u4f5c<\/strong><\/p>\n<\/section>\n<\/section>\n<\/section>\n<\/section>\n<p powered-by=\"xiumi.us\">\u6211\u4eec\u53ef\u4ee5\u4f7f\u7528subseq()\u51fd\u6570\u83b7\u53d6\u5e8f\u5217\u7684\u5b50\u5e8f\u5217\uff0c\u4f7f\u7528reverseComplement()\u51fd\u6570\u83b7\u53d6\u5e8f\u5217\u7684\u53cd\u5411\u4e92\u8865\u5e8f\u5217\uff0c\u4f7f\u7528translate()\u51fd\u6570\u5c06DNA\u5e8f\u5217\u7ffb\u8bd1\u6210\u86cb\u767d\u8d28\u5e8f\u5217\u3002<\/p>\n<section class=\"code-snippet__fix code-snippet__js\">\n<ul class=\"code-snippet__line-index code-snippet__js\">\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<\/ul>\n<pre class=\"code-snippet__js\" data-lang=\"r\"><code><span class=\"code-snippet_outer\">```r<\/span><\/code><code><span class=\"code-snippet_outer\"># \u83b7\u53d6\u5e8f\u5217\u7684\u5b50\u5e8f\u5217<\/span><\/code><code><span class=\"code-snippet_outer\">sub_sequence <- subseq(fasta_sequences[[1]], start=1, end=10)<\/span><\/code><code><span class=\"code-snippet_outer\"><br \/><\/span><\/code><code><span class=\"code-snippet_outer\"># \u83b7\u53d6\u5e8f\u5217\u7684\u53cd\u5411\u4e92\u8865\u5e8f\u5217<\/span><\/code><code><span class=\"code-snippet_outer\">reverse_complement <- reverseComplement(fasta_sequences[[1]])<\/span><\/code><code><span class=\"code-snippet_outer\"><br \/><\/span><\/code><code><span class=\"code-snippet_outer\"># \u5c06DNA\u5e8f\u5217\u7ffb\u8bd1\u6210\u86cb\u767d\u8d28\u5e8f\u5217<\/span><\/code><code><span class=\"code-snippet_outer\">protein_sequence <- translate(fasta_sequences[[1]])<\/span><\/code><code><span class=\"code-snippet_outer\">```<\/span><\/code><\/pre>\n<\/section>\n<section powered-by=\"xiumi.us\" style=\"text-align: left;justify-content: flex-start;display: flex;flex-flow: row nowrap;margin-top: 10px;margin-bottom: 10px;\">\n<section style=\"display: inline-block;vertical-align: top;width: auto;align-self: flex-start;flex: 0 0 auto;background-color: rgba(249, 172, 172, 0.19);min-width: 5%;height: auto;line-height: 1;\">\n<section powered-by=\"xiumi.us\" style=\"justify-content: flex-start;display: flex;flex-flow: row nowrap;\">\n<section style=\"display: inline-block;vertical-align: top;width: auto;align-self: flex-start;flex: 0 0 auto;min-width: 5%;height: auto;margin-right: 8px;\">\n<section powered-by=\"xiumi.us\" style=\"\">\n<section style=\"display: inline-block;width: 8px;height: 8px;vertical-align: top;overflow: hidden;background-color: rgb(255, 255, 255);box-shadow: rgb(255, 255, 255) 8px 8px 0px;\">\n<section powered-by=\"xiumi.us\" style=\"text-align: justify;\">\n<p><br \/><\/p>\n<\/section>\n<\/section>\n<\/section>\n<\/section>\n<section style=\"display: inline-block;vertical-align: top;width: auto;min-width: 5%;flex: 0 0 auto;height: auto;\">\n<section powered-by=\"xiumi.us\" style=\"text-align: center;\">\n<section style=\"display: inline-block;width: 16px;height: 16px;vertical-align: top;overflow: hidden;background-color: rgb(249, 172, 172);\">\n<section powered-by=\"xiumi.us\" style=\"text-align: justify;\">\n<p><br \/><\/p>\n<\/section>\n<\/section>\n<\/section>\n<\/section>\n<\/section>\n<section powered-by=\"xiumi.us\" style=\"justify-content: flex-start;display: flex;flex-flow: row nowrap;\">\n<section style=\"display: inline-block;vertical-align: top;width: auto;min-width: 5%;flex: 0 0 auto;height: auto;\">\n<section powered-by=\"xiumi.us\" style=\"text-align: center;\">\n<section style=\"display: inline-block;width: 16px;height: 16px;vertical-align: top;overflow: hidden;background-color: rgb(249, 172, 172);\">\n<section powered-by=\"xiumi.us\" style=\"text-align: justify;\">\n<p><br \/><\/p>\n<\/section>\n<\/section>\n<\/section>\n<\/section>\n<section style=\"display: inline-block;vertical-align: top;width: auto;align-self: flex-start;flex: 0 0 auto;min-width: 5%;height: auto;\">\n<section powered-by=\"xiumi.us\" style=\"\">\n<section style=\"display: inline-block;width: 8px;height: 8px;vertical-align: top;overflow: hidden;background-color: rgb(255, 255, 255);box-shadow: rgb(255, 255, 255) 8px 8px 0px;\">\n<section powered-by=\"xiumi.us\" style=\"text-align: justify;\">\n<p><br \/><\/p>\n<\/section>\n<\/section>\n<\/section>\n<\/section>\n<\/section>\n<\/section>\n<section style=\"display: inline-block;vertical-align: top;width: auto;flex: 100 100 0%;height: auto;background-color: rgba(249, 172, 172, 0.19);\">\n<section powered-by=\"xiumi.us\" style=\"transform: translate3d(7px, 0px, 0px);margin-top: 3px;\">\n<section style=\"text-align: justify;\">\n<p><strong>\u56db\u3001\u5e8f\u5217\u6bd4\u5bf9<\/strong><\/p>\n<\/section>\n<\/section>\n<\/section>\n<\/section>\n<p powered-by=\"xiumi.us\">\u6211\u4eec\u53ef\u4ee5\u4f7f\u7528pairwiseAlignment()\u51fd\u6570\u8fdb\u884c\u5e8f\u5217\u6bd4\u5bf9\uff0c\u4f7f\u7528needlemanWunsch()\u51fd\u6570\u8fdb\u884c\u5168\u5c40\u6bd4\u5bf9\uff0c\u4f7f\u7528smithWaterman()\u51fd\u6570\u8fdb\u884c\u5c40\u90e8\u6bd4\u5bf9\u3002<\/p>\n<section class=\"code-snippet__fix code-snippet__js\">\n<ul class=\"code-snippet__line-index code-snippet__js\">\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<\/ul>\n<pre class=\"code-snippet__js\" data-lang=\"r\"><code><span class=\"code-snippet_outer\">```r<\/span><\/code><code><span class=\"code-snippet_outer\"># \u4e24\u4e2a\u5e8f\u5217\u7684\u6bd4\u5bf9<\/span><\/code><code><span class=\"code-snippet_outer\">alignment <- pairwiseAlignment(fasta_sequences[[1]], fasta_sequences[[2]])<\/span><\/code><code><span class=\"code-snippet_outer\"><br \/><\/span><\/code><code><span class=\"code-snippet_outer\"># \u5168\u5c40\u6bd4\u5bf9<\/span><\/code><code><span class=\"code-snippet_outer\">global_alignment <- needlemanWunsch(fasta_sequences[[1]], fasta_sequences[[2]])<\/span><\/code><code><span class=\"code-snippet_outer\"><br \/><\/span><\/code><code><span class=\"code-snippet_outer\"># \u5c40\u90e8\u6bd4\u5bf9<\/span><\/code><code><span class=\"code-snippet_outer\">local_alignment <- smithWaterman(fasta_sequences[[1]], fasta_sequences[[2]])<\/span><\/code><code><span class=\"code-snippet_outer\">```<\/span><\/code><\/pre>\n<\/section>\n<section powered-by=\"xiumi.us\" style=\"text-align: left;justify-content: flex-start;display: flex;flex-flow: row nowrap;margin-top: 10px;margin-bottom: 10px;\">\n<section style=\"display: inline-block;vertical-align: top;width: auto;align-self: flex-start;flex: 0 0 auto;background-color: rgba(249, 172, 172, 0.19);min-width: 5%;height: auto;line-height: 1;\">\n<section powered-by=\"xiumi.us\" style=\"justify-content: flex-start;display: flex;flex-flow: row nowrap;\">\n<section style=\"display: inline-block;vertical-align: top;width: auto;align-self: flex-start;flex: 0 0 auto;min-width: 5%;height: auto;margin-right: 8px;\">\n<section powered-by=\"xiumi.us\" style=\"\">\n<section style=\"display: inline-block;width: 8px;height: 8px;vertical-align: top;overflow: hidden;background-color: rgb(255, 255, 255);box-shadow: rgb(255, 255, 255) 8px 8px 0px;\">\n<section powered-by=\"xiumi.us\" style=\"text-align: justify;\">\n<p><br \/><\/p>\n<\/section>\n<\/section>\n<\/section>\n<\/section>\n<section style=\"display: inline-block;vertical-align: top;width: auto;min-width: 5%;flex: 0 0 auto;height: auto;\">\n<section powered-by=\"xiumi.us\" style=\"text-align: center;\">\n<section style=\"display: inline-block;width: 16px;height: 16px;vertical-align: top;overflow: hidden;background-color: rgb(249, 172, 172);\">\n<section powered-by=\"xiumi.us\" style=\"text-align: justify;\">\n<p><br \/><\/p>\n<\/section>\n<\/section>\n<\/section>\n<\/section>\n<\/section>\n<section powered-by=\"xiumi.us\" style=\"justify-content: flex-start;display: flex;flex-flow: row nowrap;\">\n<section style=\"display: inline-block;vertical-align: top;width: auto;min-width: 5%;flex: 0 0 auto;height: auto;\">\n<section powered-by=\"xiumi.us\" style=\"text-align: center;\">\n<section style=\"display: inline-block;width: 16px;height: 16px;vertical-align: top;overflow: hidden;background-color: rgb(249, 172, 172);\">\n<section powered-by=\"xiumi.us\" style=\"text-align: justify;\">\n<p><br \/><\/p>\n<\/section>\n<\/section>\n<\/section>\n<\/section>\n<section style=\"display: inline-block;vertical-align: top;width: auto;align-self: flex-start;flex: 0 0 auto;min-width: 5%;height: auto;\">\n<section powered-by=\"xiumi.us\" style=\"\">\n<section style=\"display: inline-block;width: 8px;height: 8px;vertical-align: top;overflow: hidden;background-color: rgb(255, 255, 255);box-shadow: rgb(255, 255, 255) 8px 8px 0px;\">\n<section powered-by=\"xiumi.us\" style=\"text-align: justify;\">\n<p><br \/><\/p>\n<\/section>\n<\/section>\n<\/section>\n<\/section>\n<\/section>\n<\/section>\n<section style=\"display: inline-block;vertical-align: top;width: auto;flex: 100 100 0%;height: auto;background-color: rgba(249, 172, 172, 0.19);\">\n<section powered-by=\"xiumi.us\" style=\"transform: translate3d(7px, 0px, 0px);margin-top: 3px;\">\n<section style=\"text-align: justify;\">\n<p><strong>\u4e94\u3001\u5e8f\u5217\u5206\u6790<\/strong><\/p>\n<\/section>\n<\/section>\n<\/section>\n<\/section>\n<p powered-by=\"xiumi.us\">\u6211\u4eec\u53ef\u4ee5\u4f7f\u7528Biostrings\u5305\u4e2d\u7684\u591a\u79cd\u51fd\u6570\u8fdb\u884c\u5e8f\u5217\u5206\u6790\uff0c\u5982countPattern()\u51fd\u6570\u8ba1\u7b97\u5e8f\u5217\u4e2d\u67d0\u4e2a\u6a21\u5f0f\u7684\u51fa\u73b0\u6b21\u6570\uff0cmatchPattern()\u51fd\u6570\u67e5\u627e\u5e8f\u5217\u4e2d\u67d0\u4e2a\u6a21\u5f0f\u7684\u4f4d\u7f6e\uff0cfindPalindromes()\u51fd\u6570\u67e5\u627e\u5e8f\u5217\u4e2d\u7684\u56de\u6587\u5e8f\u5217\uff0cfindMotifs()\u51fd\u6570\u67e5\u627e\u5e8f\u5217\u4e2d\u7684\u4fdd\u5b88\u5e8f\u5217\u7b49\u3002<\/p>\n<section class=\"code-snippet__fix code-snippet__js\">\n<ul class=\"code-snippet__line-index code-snippet__js\">\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<\/ul>\n<pre class=\"code-snippet__js\" data-lang=\"r\"><code><span class=\"code-snippet_outer\">```r<\/span><\/code><code><span class=\"code-snippet_outer\"># \u8ba1\u7b97\u5e8f\u5217\u4e2d\u67d0\u4e2a\u6a21\u5f0f\u7684\u51fa\u73b0\u6b21\u6570<\/span><\/code><code><span class=\"code-snippet_outer\">pattern_count <- countPattern(fasta_sequences[[1]], \"AT\")<\/span><\/code><code><span class=\"code-snippet_outer\"><br \/><\/span><\/code><code><span class=\"code-snippet_outer\"># \u67e5\u627e\u5e8f\u5217\u4e2d\u67d0\u4e2a\u6a21\u5f0f\u7684\u4f4d\u7f6e<\/span><\/code><code><span class=\"code-snippet_outer\">pattern_position <- matchPattern(fasta_sequences[[1]], \"AT\")<\/span><\/code><code><span class=\"code-snippet_outer\"><br \/><\/span><\/code><code><span class=\"code-snippet_outer\"># \u67e5\u627e\u5e8f\u5217\u4e2d\u7684\u56de\u6587\u5e8f\u5217<\/span><\/code><code><span class=\"code-snippet_outer\">palindromes <- findPalindromes(fasta_sequences[[1]])<\/span><\/code><code><span class=\"code-snippet_outer\"><br \/><\/span><\/code><code><span class=\"code-snippet_outer\"># \u67e5\u627e\u5e8f\u5217\u4e2d\u7684\u4fdd\u5b88\u5e8f\u5217<\/span><\/code><code><span class=\"code-snippet_outer\">motifs <- findMotifs(fasta_sequences[[1]], PWM)<\/span><\/code><code><span class=\"code-snippet_outer\">```<\/span><\/code><\/pre>\n<\/section>\n<section powered-by=\"xiumi.us\" style=\"text-align: left;justify-content: flex-start;display: flex;flex-flow: row nowrap;margin-top: 10px;margin-bottom: 10px;\">\n<section style=\"display: inline-block;vertical-align: top;width: auto;align-self: flex-start;flex: 0 0 auto;background-color: rgba(249, 172, 172, 0.19);min-width: 5%;height: auto;line-height: 1;\">\n<section powered-by=\"xiumi.us\" style=\"justify-content: flex-start;display: flex;flex-flow: row nowrap;\">\n<section style=\"display: inline-block;vertical-align: top;width: auto;align-self: flex-start;flex: 0 0 auto;min-width: 5%;height: auto;margin-right: 8px;\">\n<section powered-by=\"xiumi.us\" style=\"\">\n<section style=\"display: inline-block;width: 8px;height: 8px;vertical-align: top;overflow: hidden;background-color: rgb(255, 255, 255);box-shadow: rgb(255, 255, 255) 8px 8px 0px;\">\n<section powered-by=\"xiumi.us\" style=\"text-align: justify;\">\n<p><br \/><\/p>\n<\/section>\n<\/section>\n<\/section>\n<\/section>\n<section style=\"display: inline-block;vertical-align: top;width: auto;min-width: 5%;flex: 0 0 auto;height: auto;\">\n<section powered-by=\"xiumi.us\" style=\"text-align: center;\">\n<section style=\"display: inline-block;width: 16px;height: 16px;vertical-align: top;overflow: hidden;background-color: rgb(249, 172, 172);\">\n<section powered-by=\"xiumi.us\" style=\"text-align: justify;\">\n<p><br \/><\/p>\n<\/section>\n<\/section>\n<\/section>\n<\/section>\n<\/section>\n<section powered-by=\"xiumi.us\" style=\"justify-content: flex-start;display: flex;flex-flow: row nowrap;\">\n<section style=\"display: inline-block;vertical-align: top;width: auto;min-width: 5%;flex: 0 0 auto;height: auto;\">\n<section powered-by=\"xiumi.us\" style=\"text-align: center;\">\n<section style=\"display: inline-block;width: 16px;height: 16px;vertical-align: top;overflow: hidden;background-color: rgb(249, 172, 172);\">\n<section powered-by=\"xiumi.us\" style=\"text-align: justify;\">\n<p><br \/><\/p>\n<\/section>\n<\/section>\n<\/section>\n<\/section>\n<section style=\"display: inline-block;vertical-align: top;width: auto;align-self: flex-start;flex: 0 0 auto;min-width: 5%;height: auto;\">\n<section powered-by=\"xiumi.us\" style=\"\">\n<section style=\"display: inline-block;width: 8px;height: 8px;vertical-align: top;overflow: hidden;background-color: rgb(255, 255, 255);box-shadow: rgb(255, 255, 255) 8px 8px 0px;\">\n<section powered-by=\"xiumi.us\" style=\"text-align: justify;\">\n<p><br \/><\/p>\n<\/section>\n<\/section>\n<\/section>\n<\/section>\n<\/section>\n<\/section>\n<section style=\"display: inline-block;vertical-align: top;width: auto;flex: 100 100 0%;height: auto;background-color: rgba(249, 172, 172, 0.19);\">\n<section powered-by=\"xiumi.us\" style=\"transform: translate3d(7px, 0px, 0px);margin-top: 3px;\">\n<section style=\"text-align: justify;\">\n<p><strong>\u603b\u7ed3<\/strong><\/p>\n<\/section>\n<\/section>\n<\/section>\n<\/section>\n<section powered-by=\"xiumi.us\">\n<p>\u901a\u8fc7\u4ee5\u4e0a\u4ecb\u7ecd\uff0c\u6211\u4eec\u53ef\u4ee5\u770b\u5230R\u8bed\u8a00\u5728\u5904\u7406FASTA\u5e8f\u5217\u65b9\u9762\u7684\u5f3a\u5927\u529f\u80fd\u548c\u7075\u6d3b\u6027\u3002\u901a\u8fc7\u5b66\u4e60R\u8bed\u8a00\uff0c\u6211\u4eec\u53ef\u4ee5\u66f4\u597d\u5730\u7406\u89e3\u751f\u7269\u5e8f\u5217\u4e4b\u95f4\u7684\u5173\u7cfb\uff0c\u4ece\u800c\u505a\u51fa\u66f4\u597d\u7684\u751f\u7269\u4fe1\u606f\u5b66\u5206\u6790<\/p>\n<p><br \/><\/p>\n<p>\u597d\u4e86\uff0c\u4eca\u5929\u7684\u5206\u4eab\u5c31\u5230\u8fd9\u91cc\u4e86\uff0c\u6b22\u8fce\u5173\u6ce8”R\u8bed\u8a00\u5b66\u5f92\u201d\u516c\u4f17\u53f7\uff0c\u4e3b\u8981\u53d1\u8868\u6216\u6536\u5f55\u751f\u7269\u4fe1\u606f\u5b66\u7684\u6559\u7a0b\uff0c\u4ee5\u53ca\u57fa\u4e8eR\u7684\u5206\u6790\u548c\u53ef\u89c6\u5316\u7b49\u5185\u5bb9\uff0c\u4e00\u8d77\u89c1\u8bc1\u5c0f\u767d\u548c\u5927\u4f6c\u7684\u6210\u957f\u3002<\/p>\n<\/section>\n<section powered-by=\"xiumi.us\" style=\"text-align: center;justify-content: center;display: flex;flex-flow: row nowrap;margin-top: 10px;margin-bottom: 10px;\">\n<section style=\"display: inline-block;vertical-align: middle;width: auto;flex: 100 100 0%;height: auto;align-self: center;margin-right: 10px;\">\n<section powered-by=\"xiumi.us\" style=\"margin-top: 10px;margin-bottom: 10px;\">\n<section style=\"background-color: rgb(249, 172, 172);height: 1px;\"><svg viewbox=\"0 0 1 1\" style=\"float:left;line-height:0;width:0;vertical-align:top;\"><\/svg><\/section>\n<\/section>\n<\/section>\n<section style=\"display: inline-block;vertical-align: middle;width: auto;align-self: center;flex: 0 0 auto;min-width: 5%;height: auto;border-width: 1px;border-style: solid;border-color: rgb(249, 172, 172);padding-right: 8px;padding-left: 8px;margin-right: 10px;\">\n<section powered-by=\"xiumi.us\" style=\"text-align: justify;color: rgb(249, 172, 172);\">\n<p>E<\/p>\n<\/section>\n<\/section>\n<section style=\"display: inline-block;vertical-align: middle;width: auto;align-self: center;flex: 0 0 auto;min-width: 5%;height: auto;border-width: 1px;border-style: solid;border-color: rgb(249, 172, 172);padding-right: 8px;padding-left: 8px;margin-right: 10px;\">\n<section powered-by=\"xiumi.us\" style=\"text-align: justify;color: rgb(249, 172, 172);\">\n<p>N<\/p>\n<\/section>\n<\/section>\n<section style=\"display: inline-block;vertical-align: middle;width: auto;align-self: center;flex: 0 0 auto;min-width: 5%;height: auto;border-width: 1px;border-style: solid;border-color: rgb(249, 172, 172);padding-right: 8px;padding-left: 8px;margin-right: 10px;\">\n<section powered-by=\"xiumi.us\" style=\"text-align: justify;color: rgb(249, 172, 172);\">\n<p>D<\/p>\n<\/section>\n<\/section>\n<section style=\"display: inline-block;vertical-align: middle;width: auto;align-self: center;flex: 100 100 0%;height: auto;\">\n<section powered-by=\"xiumi.us\" style=\"margin-top: 10px;margin-bottom: 10px;\">\n<section style=\"background-color: rgb(249, 172, 172);height: 1px;\"><svg viewbox=\"0 0 1 1\" style=\"float:left;line-height:0;width:0;vertical-align:top;\"><\/svg><\/section>\n<\/section>\n<\/section>\n<\/section>\n<\/section>\n<p style=\"margin-bottom: 24px;\"><a target=\"_blank\" href=\"http:\/\/mp.weixin.qq.com\/s?__biz=MzAwNjE0MDY3MQ==&mid=2650761303&idx=2&sn=6f73471d1e82c56c0b2160d0fcd32d53&chksm=831a2fc7b46da6d17eb8cd2ede7c539f40a6b6684c5f8fcf44b2cd16bd3da775c1ea62827ab6&scene=21#wechat_redirect\" textvalue=\"\u4f60\u5df2\u9009\u4e2d\u4e86\u6dfb\u52a0\u94fe\u63a5\u7684\u5185\u5bb9\" linktype=\"text\" imgurl=\"\" imgdata=\"null\" data-itemshowtype=\"0\" tab=\"innerlink\" data-linktype=\"1\" rel=\"noopener\"><span class=\"js_jump_icon h5_image_link\"><img decoding=\"async\" class=\"rich_pages wxw-img\" data-ratio=\"0.35083798882681566\" data-s=\"300,640\" src=\"https:\/\/i0.wp.com\/www.biocloudservice.com\/wordpress\/wp-content\/uploads\/2024\/06\/1_LzaFJVwzzLgfnj6Qf8lBiaTR4Pziag.jpg?w=640\" onerror=\"this.src='https:\/\/mmbiz.qpic.cn\/sz_mmbiz_jpg\/oCSOtP61aEUEOPhTDbhztaU7davdEP2YWOAtToI143Aic2TkkStosJ9iahcnLzaFJVwzzLgfnj6Qf8lBiaTR4Pziag\/640?wx_fmt=jpeg'\" data-type=\"jpeg\" data-w=\"895\" style=\"\" data-recalc-dims=\"1\"><\/span><\/a><\/p>\n<p style=\"margin-bottom: 24px;\"><img decoding=\"async\" class=\"rich_pages wxw-img\" data-ratio=\"0.5555555555555556\" data-s=\"300,640\" src=\"https:\/\/i0.wp.com\/www.biocloudservice.com\/wordpress\/wp-content\/uploads\/2024\/06\/2_akXKU5NcO1KwuWc1Rk7ZJ56LC2pYrQ.png?w=640\" onerror=\"this.src='https:\/\/mmbiz.qpic.cn\/sz_mmbiz_png\/oCSOtP61aEXjjmsEC5aXz0RE4be2ib1fJPnBD8yX0Z6OF2zocd2ngHpLOakXKU5NcO1KwuWc1Rk7ZJ56LC2pYrQ\/640?wx_fmt=png'\" data-type=\"png\" data-w=\"900\" style=\"\" data-recalc-dims=\"1\"><\/p>\n<p style=\"margin-bottom: 24px;\"><br \/><\/p>\n<p style=\"display: none;margin-bottom: 24px;\"><mp-style-type data-value=\"3\"><\/mp-style-type><\/p>\n<p><\/content>\n<\/div>\n<p><\/body><br \/>\n<\/html><\/p>\n","protected":false},"excerpt":{"rendered":"<p>\u5e08\u59b9\u8bfe\u5802\u4e4bR\u8bed\u8a00\u5904\u7406fasta\u5e8f\u5217 \u5c0f\u5e08\u59b9 \u751f\u4fe1\u679c 2023-07 […]<\/p>\n","protected":false},"author":1,"featured_media":0,"comment_status":"closed","ping_status":"","sticky":false,"template":"","format":"standard","meta":{"jetpack_post_was_ever_published":false,"_jetpack_newsletter_access":""},"categories":[1],"tags":[],"jetpack_featured_media_url":"","_links":{"self":[{"href":"http:\/\/www.biocloudservice.com\/wordpress\/index.php?rest_route=\/wp\/v2\/posts\/59040"}],"collection":[{"href":"http:\/\/www.biocloudservice.com\/wordpress\/index.php?rest_route=\/wp\/v2\/posts"}],"about":[{"href":"http:\/\/www.biocloudservice.com\/wordpress\/index.php?rest_route=\/wp\/v2\/types\/post"}],"author":[{"embeddable":true,"href":"http:\/\/www.biocloudservice.com\/wordpress\/index.php?rest_route=\/wp\/v2\/users\/1"}],"replies":[{"embeddable":true,"href":"http:\/\/www.biocloudservice.com\/wordpress\/index.php?rest_route=%2Fwp%2Fv2%2Fcomments&post=59040"}],"version-history":[{"count":1,"href":"http:\/\/www.biocloudservice.com\/wordpress\/index.php?rest_route=\/wp\/v2\/posts\/59040\/revisions"}],"predecessor-version":[{"id":59043,"href":"http:\/\/www.biocloudservice.com\/wordpress\/index.php?rest_route=\/wp\/v2\/posts\/59040\/revisions\/59043"}],"wp:attachment":[{"href":"http:\/\/www.biocloudservice.com\/wordpress\/index.php?rest_route=%2Fwp%2Fv2%2Fmedia&parent=59040"}],"wp:term":[{"taxonomy":"category","embeddable":true,"href":"http:\/\/www.biocloudservice.com\/wordpress\/index.php?rest_route=%2Fwp%2Fv2%2Fcategories&post=59040"},{"taxonomy":"post_tag","embeddable":true,"href":"http:\/\/www.biocloudservice.com\/wordpress\/index.php?rest_route=%2Fwp%2Fv2%2Ftags&post=59040"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}