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auto;\">\n<section style=\"text-align: center;\" powered-by=\"xiumi.us\">\n<section style=\"display: inline-block;width: 10px;height: 10px;vertical-align: top;overflow: hidden;border-radius: 632px;background-color: rgb(221, 240, 245);\">\n<section style=\"text-align: justify;\" powered-by=\"xiumi.us\">\n<p><br \/><\/p>\n<\/section>\n<\/section>\n<\/section>\n<\/section>\n<\/section>\n<\/section>\n<section style=\"margin-bottom: 5px;transform: translate3d(1px, 0px, 0px);\" powered-by=\"xiumi.us\">\n<section style=\"text-align: justify;color: rgb(61, 61, 61);\">\n<p>\u70b9\u51fb\u84dd\u5b57 \u5173\u6ce8\u6211\u4eec<\/p>\n<\/section>\n<\/section>\n<\/section>\n<\/section>\n<\/section>\n<\/section>\n<section style=\"text-align: left;justify-content: flex-start;display: flex;flex-flow: row;margin-top: 10px;margin-bottom: 10px;\" powered-by=\"xiumi.us\">\n<section style=\"display: inline-block;width: 100%;vertical-align: top;align-self: flex-start;flex: 0 0 auto;border-style: 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wrap;\">WGCNA\u5305\u63d0\u4f9b\u4e86\u4e00\u5957\u4e30\u5bcc\u800c\u5168\u9762\u7684\u5de5\u5177\uff0c\u7528\u4e8e\u6784\u5efa\u3001\u53ef\u89c6\u5316\u548c\u89e3\u91ca\u57fa\u56e0\u5171\u8868\u8fbe\u7f51\u7edc\u3002\u5b83\u901a\u8fc7\u8ba1\u7b97\u57fa\u56e0\u8868\u8fbe\u6570\u636e\u4e2d\u57fa\u56e0\u4e4b\u95f4\u7684\u76f8\u5173\u6027\uff0c\u5c06\u9ad8\u76f8\u5173\u6027\u7684\u57fa\u56e0\u805a\u7c7b\u6210\u6a21\u5757\uff0c\u5e76\u8bc6\u522b\u51fa\u6a21\u5757\u4e0e\u7279\u5b9a\u751f\u7269\u5b66\u8fc7\u7a0b\u6216\u6027\u72b6\u4e4b\u95f4\u7684\u5173\u8054\u3002<\/p>\n<p style=\"text-indent: 2em;text-wrap: wrap;\"><span style=\"font-size: 18px;\">\u4f7f\u7528WGCNA\u5305\uff0c\u4f60\u53ef\u4ee5\u6267\u884c\u4ee5\u4e0b\u4e3b\u8981\u4efb\u52a1\uff1a<\/span><\/p>\n<\/section>\n<\/section>\n<\/section>\n<section style=\"text-align: left;justify-content: flex-start;display: flex;flex-flow: row;margin-top: 10px;margin-bottom: 10px;\" powered-by=\"xiumi.us\">\n<section style=\"display: inline-block;width: 100%;vertical-align: top;align-self: flex-start;flex: 0 0 auto;border-style: solid;border-width: 10px;border-color: rgb(228, 248, 254);padding: 18px;\">\n<section style=\"text-align: justify;\" powered-by=\"xiumi.us\">\n<p style=\"margin-bottom: 12px;text-wrap: wrap;\"><strong>1\u6784\u5efa\u57fa\u56e0\u5171\u8868\u8fbe\u7f51\u7edc\uff1a<\/strong><\/p>\n<p style=\"margin-bottom: 12px;text-wrap: wrap;\">WGCNA\u901a\u8fc7\u8ba1\u7b97\u57fa\u56e0\u95f4\u7684\u76f8\u5173\u7cfb\u6570\u6765\u6784\u5efa\u57fa\u56e0\u5171\u8868\u8fbe\u7f51\u7edc\u3002\u5b83\u53ef\u4ee5\u6839\u636e\u4e0d\u540c\u7684\u76f8\u5173\u7cfb\u6570\u65b9\u6cd5\uff08\u5982Pearson\u76f8\u5173\u7cfb\u6570\u3001Spearman\u76f8\u5173\u7cfb\u6570\u7b49\uff09\u8fdb\u884c\u8ba1\u7b97\uff0c\u5e76\u6839\u636e\u7528\u6237\u7684\u9009\u62e9\u521b\u5efa\u4e00\u4e2a\u52a0\u6743\u7f51\u7edc\u3002<\/p>\n<p style=\"margin-bottom: 12px;text-wrap: wrap;\"><br \/><\/p>\n<p style=\"margin-bottom: 12px;text-wrap: wrap;\"><strong>2\u6a21\u5757\u68c0\u6d4b\uff1a<\/strong><\/p>\n<p style=\"margin-bottom: 12px;text-wrap: wrap;\">WGCNA\u5c06\u9ad8\u76f8\u5173\u6027\u7684\u57fa\u56e0\u805a\u7c7b\u6210\u6a21\u5757\uff0c\u6bcf\u4e2a\u6a21\u5757\u4ee3\u8868\u4e00\u4e2a\u5177\u6709\u7c7b\u4f3c\u8868\u8fbe\u6a21\u5f0f\u7684\u57fa\u56e0\u96c6\u5408\u3002\u8fd9\u4e9b\u6a21\u5757\u53ef\u4ee5\u5e2e\u52a9\u6211\u4eec\u8bc6\u522b\u751f\u7269\u5b66\u529f\u80fd\u76f8\u5173\u7684\u57fa\u56e0\u7ec4\u3002<\/p>\n<p style=\"margin-bottom: 12px;text-wrap: wrap;\"><br \/><\/p>\n<p style=\"margin-bottom: 12px;text-wrap: wrap;\"><strong>3\u6a21\u5757\u4e0e\u6027\u72b6\u5173\u8054\uff1a<\/strong><\/p>\n<p style=\"margin-bottom: 12px;text-wrap: wrap;\">WGCNA\u53ef\u4ee5\u901a\u8fc7\u8ba1\u7b97\u6a21\u5757\u4e0e\u7ed9\u5b9a\u6027\u72b6\u4e4b\u95f4\u7684\u5173\u8054\u6765\u9274\u5b9a\u4e0e\u6027\u72b6\u76f8\u5173\u7684\u6a21\u5757\u3002\u8fd9\u6709\u52a9\u4e8e\u6211\u4eec\u7406\u89e3\u57fa\u56e0\u4e0e\u7279\u5b9a\u6027\u72b6\uff08\u5982\u75be\u75c5\u72b6\u6001\u3001\u8868\u578b\u53d8\u5316\u7b49\uff09\u4e4b\u95f4\u7684\u5173\u7cfb\u3002<\/p>\n<p style=\"margin-bottom: 12px;text-wrap: wrap;\"><br \/><\/p>\n<p style=\"margin-bottom: 12px;text-wrap: wrap;\"><strong>4\u6570\u636e\u53ef\u89c6\u5316\uff1a<\/strong><\/p>\n<p style=\"margin-bottom: 12px;text-wrap: wrap;\">WGCNA\u63d0\u4f9b\u4e86\u591a\u79cd\u53ef\u89c6\u5316\u5de5\u5177\uff0c\u4f7f\u7528\u6237\u80fd\u591f\u76f4\u89c2\u5730\u63a2\u7d22\u548c\u5448\u73b0\u57fa\u56e0\u5171\u8868\u8fbe\u7f51\u7edc\u3001\u6a21\u5757\u548c\u6a21\u5757\u4e0e\u6027\u72b6\u7684\u5173\u8054\u3002\u8fd9\u4e9b\u5de5\u5177\u5305\u62ec\u70ed\u56fe\u3001\u7f51\u7edc\u56fe\u3001\u6563\u70b9\u56fe\u7b49\u3002<\/p>\n<p style=\"text-indent: 2em;text-wrap: wrap;\">WGCNA\u5728\u751f\u7269\u5b66\u7814\u7a76\u4e2d\u5e7f\u6cdb\u5e94\u7528\uff0c\u7279\u522b\u662f\u5728\u53d1\u73b0\u548c\u89e3\u91ca\u57fa\u56e0\u8c03\u63a7\u7f51\u7edc\u65b9\u9762\u3002\u5b83\u53ef\u4ee5\u5e2e\u52a9\u63ed\u793a\u75be\u75c5\u673a\u5236\u3001\u9274\u5b9a\u751f\u7269\u6807\u5fd7\u7269\u3001\u9884\u6d4b\u836f\u7269\u54cd\u5e94\u7b49\u3002\u901a\u8fc7\u4f7f\u7528WGCNA\u5305\uff0c\u7814\u7a76\u4eba\u5458\u53ef\u4ee5\u66f4\u597d\u5730\u7406\u89e3\u57fa\u56e0\u8868\u8fbe\u6570\u636e\uff0c\u5e76\u4ece\u4e2d\u83b7\u5f97\u6709\u5173\u751f\u7269\u5b66\u8fc7\u7a0b\u7684\u6df1\u5165\u6d1e\u5bdf\u3002<\/p>\n<\/section>\n<\/section>\n<\/section>\n<p powered-by=\"xiumi.us\"><br \/><\/p>\n<section style=\"text-align: left;justify-content: flex-start;display: flex;flex-flow: row;margin-top: 10px;margin-bottom: 10px;\" powered-by=\"xiumi.us\">\n<section style=\"display: inline-block;vertical-align: bottom;width: auto;align-self: flex-end;flex: 0 0 auto;min-width: 5%;height: auto;padding-right: 7px;\"><svg viewbox=\"0 0 1 1\" style=\"float:left;line-height:0;width:0;vertical-align:top;\"><\/svg><\/section>\n<section style=\"display: inline-block;vertical-align: bottom;width: auto;align-self: flex-end;flex: 100 100 0%;height: auto;\">\n<section style=\"height: auto;transform: perspective(0px);transform-style: flat;\" powered-by=\"xiumi.us\">\n<section style=\"justify-content: flex-start;display: flex;flex-flow: row;transform: rotateX(180deg);\">\n<section style=\"display: inline-block;vertical-align: middle;width: auto;align-self: center;flex: 0 0 auto;min-width: 5%;height: auto;\">\n<section style=\"text-align: center;\" powered-by=\"xiumi.us\">\n<section style=\"display: inline-block;width: 10px;height: 10px;vertical-align: top;overflow: hidden;border-radius: 632px;background-color: rgb(221, 240, 245);\">\n<section style=\"text-align: justify;\" powered-by=\"xiumi.us\">\n<p><br \/><\/p>\n<\/section>\n<\/section>\n<\/section>\n<\/section>\n<section style=\"display: inline-block;vertical-align: middle;width: auto;align-self: center;flex: 0 0 auto;min-width: 5%;height: auto;\">\n<section style=\"text-align: center;\" powered-by=\"xiumi.us\">\n<section style=\"display: inline-block;width: 10px;height: 10px;vertical-align: top;overflow: hidden;border-radius: 632px;background-color: rgb(221, 240, 245);\">\n<section style=\"text-align: justify;\" powered-by=\"xiumi.us\">\n<p><br \/><\/p>\n<\/section>\n<\/section>\n<\/section>\n<\/section>\n<section style=\"display: inline-block;vertical-align: middle;width: auto;align-self: center;flex: 0 0 auto;min-width: 5%;height: auto;\">\n<section style=\"text-align: center;\" powered-by=\"xiumi.us\">\n<section style=\"display: inline-block;width: 10px;height: 10px;vertical-align: top;overflow: hidden;border-radius: 632px;background-color: rgb(221, 240, 245);\">\n<section style=\"text-align: justify;\" powered-by=\"xiumi.us\">\n<p><br \/><\/p>\n<\/section>\n<\/section>\n<\/section>\n<\/section>\n<\/section>\n<\/section>\n<section style=\"margin-bottom: 5px;\" powered-by=\"xiumi.us\">\n<section style=\"text-align: justify;font-size: 24px;color: rgb(0, 0, 0);\">\n<p>WGCNA\u8fdb\u884c\u57fa\u56e0\u8868\u8fbe\u6570\u636e\u5206\u6790<\/p>\n<\/section>\n<\/section>\n<\/section>\n<\/section>\n<p powered-by=\"xiumi.us\"><span style=\"color: rgb(249, 110, 87);font-size: 18px;\">\u5b89\u88c5\u4e0e\u5bfc\u5165WGCNA\u5305<\/span><\/p>\n<section style=\"text-align: left;justify-content: flex-start;display: flex;flex-flow: row;margin-top: 10px;margin-bottom: 10px;\" powered-by=\"xiumi.us\">\n<section style=\"display: inline-block;width: 100%;vertical-align: top;align-self: flex-start;flex: 0 0 auto;border-style: solid;border-width: 10px;border-color: rgb(228, 248, 254);padding: 18px;\">\n<section style=\"text-align: justify;\" powered-by=\"xiumi.us\">\n<p style=\"text-indent: 2em;text-wrap: wrap;\">BiocManager::install(“WGCNA”) library(‘WGCNA’)# \u5728\u8bfb\u5165\u6570\u636e\u65f6\uff0c\u9047\u5230\u5b57\u7b26\u4e32\u4e4b\u540e\uff0c\u4e0d\u5c06\u5176\u8f6c\u6362\u4e3afactors\uff0c\u4ecd\u7136\u4fdd\u7559\u4e3a\u5b57\u7b26\u4e32\u683c\u5f0foptions(stringsAsFactors = FALSE)<\/p>\n<\/section>\n<\/section>\n<\/section>\n<section powered-by=\"xiumi.us\">\n<p style=\"margin-bottom: 12px;text-wrap: wrap;\"><span style=\"font-size: 18px;color: rgb(249, 110, 87);\">\u6570\u636e\u4e0b\u8f7d\u4e0e\u5bfc\u5165<\/span><\/p>\n<p style=\"text-indent: 2em;text-wrap: wrap;\">\u9996\u5148\u6211\u4eec\u6765\u770b\u4e00\u4e0b\u6570\u636e\u7684\u6587\u4ef6\u683c\u5f0f\uff1a<\/p>\n<\/section>\n<section style=\"text-align: center;margin-top: 10px;margin-bottom: 10px;line-height: 0;\" powered-by=\"xiumi.us\">\n<section style=\"vertical-align: middle;display: inline-block;line-height: 0;\"><img decoding=\"async\" class=\"rich_pages wxw-img\" data-ratio=\"0.4648148148148148\" data-s=\"300,640\" src=\"https:\/\/i0.wp.com\/www.biocloudservice.com\/wordpress\/wp-content\/uploads\/2024\/06\/1_ic1mT60ebiazlBBHmsdiam99Jll3CQ.png?w=640\" onerror=\"this.src='https:\/\/mmbiz.qpic.cn\/sz_mmbiz_png\/oCSOtP61aEWXBvIyDiawbGJO18IPExv3BfKpibcqmNRiac4CKzbThvpvoDBOUIic1mT60ebiazlBBHmsdiam99Jll3CQ\/640?wx_fmt=png'\" data-type=\"png\" data-w=\"1080\" style=\"vertical-align: middle;width: 100%;\" data-recalc-dims=\"1\" \/><\/section>\n<\/section>\n<p style=\"margin-bottom: 12px;text-indent: 2em;text-wrap: wrap;\" powered-by=\"xiumi.us\">\u7136\u540e\uff0c\u6211\u4eec\u9700\u8981\u5bfc\u5165\u6570\u636e\uff1a<\/p>\n<section class=\"code-snippet__fix code-snippet__js\">\n<ul class=\"code-snippet__line-index code-snippet__js\">\n<li><\/li>\n<\/ul>\n<pre class=\"code-snippet__js\" data-lang=\"c\"><code><span class=\"code-snippet_outer\"># \u5bfc\u5165\u793a\u4f8b\u6570\u636e\uff0c\u8fd9\u91cc\u586b\u5199\u81ea\u5df1\u5b58\u653e\u8868\u8fbe\u77e9\u9635\u7684\u8def\u5f84femData = read.csv(<span class=\"code-snippet__string\">\"LiverFemale3600.csv\"<\/span>) # femData\u4ee3\u8868\u8be5\u6587\u4ef6<\/span><\/code><\/pre>\n<\/section>\n<p style=\"margin-bottom: 12px;text-indent: 2em;text-wrap: wrap;\" powered-by=\"xiumi.us\"><span style=\"text-indent: 2em;\">\u4f60\u53ef\u4ee5\u4f7f\u7528dim\u51fd\u6570\u67e5\u770b\u6570\u636e\u7684\u5f62\u72b6\uff08\u884c\u6570\u548c\u5217\u6570\uff09\uff1a<\/span><\/p>\n<section class=\"code-snippet__fix code-snippet__js\">\n<ul class=\"code-snippet__line-index code-snippet__js\">\n<li><\/li>\n<\/ul>\n<pre class=\"code-snippet__js\" data-lang=\"c\"><code><span class=\"code-snippet_outer\">dim(femData) <span class=\"code-snippet__meta\"># dim\u67e5\u770b\u77e9\u9635\u5f62\u72b6<\/span><\/span><\/code><\/pre>\n<\/section>\n<p style=\"margin-bottom: 12px;text-indent: 2em;text-wrap: wrap;\" powered-by=\"xiumi.us\"><span style=\"text-indent: 2em;\">\u4f60\u53ef\u4ee5\u4f7f\u7528names\u51fd\u6570\u67e5\u770b\u6bcf\u4e00\u5217\u7684\u6807\u9898\uff08\u5217\u6807\uff09\uff1a<\/span><\/p>\n<section class=\"code-snippet__fix code-snippet__js\">\n<ul class=\"code-snippet__line-index code-snippet__js\">\n<li><\/li>\n<\/ul>\n<pre class=\"code-snippet__js\" data-lang=\"c\"><code><span class=\"code-snippet_outer\">names(femData) <span class=\"code-snippet__meta\"># names\u67e5\u770b\u5217\u6807\uff0c\u5373\u6bcf\u4e00\u5217\u7684\u6807\u9898<\/span><\/span><\/code><\/pre>\n<\/section>\n<section style=\"text-align: center;margin-top: 10px;margin-bottom: 10px;line-height: 0;\" powered-by=\"xiumi.us\">\n<section style=\"vertical-align: middle;display: inline-block;line-height: 0;\"><img decoding=\"async\" class=\"rich_pages wxw-img\" data-ratio=\"0.1675925925925926\" data-s=\"300,640\" src=\"https:\/\/i0.wp.com\/www.biocloudservice.com\/wordpress\/wp-content\/uploads\/2024\/06\/2_odvWktrkxMVBstUDDA7gGF4hKGg89w.png?w=640\" onerror=\"this.src='https:\/\/mmbiz.qpic.cn\/sz_mmbiz_png\/oCSOtP61aEWXBvIyDiawbGJO18IPExv3BNfyuEyZG9sLXwruX9yErB2ibXodvWktrkxMVBstUDDA7gGF4hKGg89w\/640?wx_fmt=png'\" data-type=\"png\" data-w=\"1080\" style=\"vertical-align: middle;width: 100%;\" data-recalc-dims=\"1\" \/><\/section>\n<\/section>\n<section powered-by=\"xiumi.us\">\n<p style=\"margin-bottom: 12px;text-wrap: wrap;\"><span style=\"color: rgb(249, 110, 87);font-size: 18px;\">\u6570\u636e\u5904\u7406<\/span><\/p>\n<p style=\"text-indent: 2em;margin-bottom: 12px;text-wrap: wrap;\">\u63a5\u4e0b\u6765\uff0c\u6211\u4eec\u5c06\u63d0\u53d6\u6837\u672c-\u57fa\u56e0\u8868\u8fbe\u77e9\u9635\uff1a<\/p>\n<\/section>\n<section class=\"code-snippet__fix code-snippet__js\">\n<ul class=\"code-snippet__line-index code-snippet__js\">\n<li><\/li>\n<\/ul>\n<pre class=\"code-snippet__js\" data-lang=\"c\"><code><span class=\"code-snippet_outer\">datExpr0 = as.data.frame(t(femData[, -c(<span class=\"code-snippet__number\">1<\/span>:<span class=\"code-snippet__number\">8<\/span>)]))<\/span><\/code><\/pre>\n<\/section>\n<section style=\"text-align: center;margin-top: 10px;margin-bottom: 10px;line-height: 0;\" powered-by=\"xiumi.us\">\n<section style=\"vertical-align: middle;display: inline-block;line-height: 0;\"><img decoding=\"async\" class=\"rich_pages wxw-img\" data-ratio=\"0.18322981366459629\" data-s=\"300,640\" src=\"https:\/\/i0.wp.com\/www.biocloudservice.com\/wordpress\/wp-content\/uploads\/2024\/06\/3_rZrW0E9ib6BBPzTnCKnP2WNPrEx0dA.png?w=640\" onerror=\"this.src='https:\/\/mmbiz.qpic.cn\/sz_mmbiz_png\/oCSOtP61aEWXBvIyDiawbGJO18IPExv3BJwJZkWd4GQT6z790xTA7wRmO1rZrW0E9ib6BBPzTnCKnP2WNPrEx0dA\/640?wx_fmt=png'\" data-type=\"png\" data-w=\"966\" style=\"vertical-align: middle;width: 100%;\" data-recalc-dims=\"1\" \/><\/section>\n<\/section>\n<p style=\"text-indent: 2em;margin-bottom: 12px;text-wrap: wrap;\" powered-by=\"xiumi.us\">\u5982\u679c\u4f60\u4e0d\u9700\u8981\u4fdd\u7559\u57fa\u56e0\u540d\u4f5c\u4e3a\u5217\u6807\uff0c\u4f60\u53ef\u4ee5\u5220\u9664\u4e0b\u9762\u8fd9\u884c\u4ee3\u7801\uff1a<\/p>\n<section class=\"code-snippet__fix code-snippet__js\">\n<ul class=\"code-snippet__line-index code-snippet__js\">\n<li><\/li>\n<\/ul>\n<pre class=\"code-snippet__js\" data-lang=\"c\"><code><span class=\"code-snippet_outer\">rownames(datExpr0) = names(femData)[-c(<span class=\"code-snippet__number\">1<\/span>:<span class=\"code-snippet__number\">8<\/span>)]<\/span><\/code><\/pre>\n<\/section>\n<p style=\"text-indent: 2em;text-wrap: wrap;\" powered-by=\"xiumi.us\">\u63a5\u4e0b\u6765\uff0c\u6211\u4eec\u53ef\u4ee5\u68c0\u67e5\u662f\u5426\u6709\u592a\u591a\u7f3a\u5931\u503c\u7684\u57fa\u56e0\u548c\u6837\u672c\uff1a<\/p>\n<section class=\"code-snippet__fix code-snippet__js\">\n<ul class=\"code-snippet__line-index code-snippet__js\">\n<li><\/li>\n<\/ul>\n<pre class=\"code-snippet__js\" data-lang=\"c\"><code><span class=\"code-snippet_outer\">egsg = goodSamplesGenes(datExpr0, verbose = <span class=\"code-snippet__number\">3<\/span>)gsg$allOK<\/span><\/code><\/pre>\n<\/section>\n<section style=\"text-align: center;margin-top: 10px;margin-bottom: 10px;line-height: 0;\" powered-by=\"xiumi.us\">\n<section style=\"vertical-align: middle;display: inline-block;line-height: 0;\"><img decoding=\"async\" data-ratio=\"0.12863534675615212\" data-s=\"300,640\" src=\"https:\/\/i0.wp.com\/www.biocloudservice.com\/wordpress\/wp-content\/uploads\/2024\/06\/4_HbqOlmNjoCiafZrzvdK32atHkdy37Q.png?w=640\" onerror=\"this.src='https:\/\/mmbiz.qpic.cn\/sz_mmbiz_png\/oCSOtP61aEWXBvIyDiawbGJO18IPExv3BKib6hkd4NsQuIRpvurce7NBkGAHbqOlmNjoCiafZrzvdK32atHkdy37Q\/640?wx_fmt=png'\" data-type=\"png\" data-w=\"894\" style=\"vertical-align: middle;width: 100%;\" data-recalc-dims=\"1\" \/><\/section>\n<\/section>\n<p style=\"text-indent: 2em;text-wrap: wrap;\" powered-by=\"xiumi.us\">\u5982\u679c\u5b58\u5728\u7f3a\u5931\u503c\u592a\u591a\u7684\u57fa\u56e0\u6216\u6837\u672c\uff0c\u4f60\u53ef\u4ee5\u9009\u62e9\u5220\u9664\u8fd9\u4e9b\u57fa\u56e0\u6216\u6837\u672c\u3002\u4ee5\u4e0b\u662f\u4e00\u4e2a\u53ef\u9009\u6b65\u9aa4\uff0c\u5b83\u4f1a\u6253\u5370\u88ab\u5220\u9664\u7684\u57fa\u56e0\u548c\u6837\u672c\u7684\u540d\u79f0\uff0c\u5e76\u5220\u9664\u4e0d\u6ee1\u8db3\u8981\u6c42\u7684\u57fa\u56e0\u548c\u6837\u672c\uff1a<\/p>\n<section class=\"code-snippet__fix code-snippet__js\">\n<ul class=\"code-snippet__line-index code-snippet__js\">\n<li><\/li>\n<\/ul>\n<pre class=\"code-snippet__js\" data-lang=\"c\"><code><span class=\"code-snippet_outer\"><span class=\"code-snippet__keyword\">if<\/span> (!gsg$allOK) { <span class=\"code-snippet__keyword\">if<\/span> (sum(!gsg$goodGenes) > <span class=\"code-snippet__number\">0<\/span>) { printFlush(paste(<span class=\"code-snippet__string\">\"Removing genes:\"<\/span>, paste(names(datExpr0)[!gsg$goodGenes], collapse = <span class=\"code-snippet__string\">\",\"<\/span>))) } <span class=\"code-snippet__keyword\">if<\/span> (sum(!gsg$goodSamples) > <span class=\"code-snippet__number\">0<\/span>) { printFlush(paste(<span class=\"code-snippet__string\">\"Removing samples:\"<\/span>, paste(rownames(datExpr0)[!gsg$goodSamples], collapse = <span class=\"code-snippet__string\">\",\"<\/span>))) } datExpr0 = datExpr0[gsg$goodSamples, gsg$goodGenes]}<\/span><\/code><\/pre>\n<\/section>\n<p style=\"text-indent: 2em;text-wrap: wrap;\" powered-by=\"xiumi.us\">\u63a5\u4e0b\u6765\uff0c\u6211\u4eec\u5c06\u4f7f\u7528\u805a\u7c7b\u65b9\u6cd5\u6784\u5efa\u4e00\u4e2a\u6837\u672c\u6811\uff1a<\/p>\n<section class=\"code-snippet__fix code-snippet__js\">\n<ul class=\"code-snippet__line-index code-snippet__js\">\n<li><\/li>\n<\/ul>\n<pre class=\"code-snippet__js\" data-lang=\"c\"><code><span class=\"code-snippet_outer\">sampleTree = hclust(dist(datExpr0), method = <span class=\"code-snippet__string\">\"average\"<\/span>)<\/span><\/code><\/pre>\n<\/section>\n<p style=\"text-indent: 2em;text-wrap: wrap;\" powered-by=\"xiumi.us\">\u7136\u540e\uff0c\u6211\u4eec\u53ef\u4ee5\u7ed8\u5236\u6837\u672c\u6811\u3002\u4ee5\u4e0b\u4ee3\u7801\u5c06\u6253\u5f00\u4e00\u4e2a\u56fe\u5f62\u8f93\u51fa\u7a97\u53e3\uff0c\u5e76\u7ed8\u5236\u6837\u672c\u6811\uff1a<\/p>\n<section class=\"code-snippet__fix code-snippet__js\">\n<ul class=\"code-snippet__line-index code-snippet__js\">\n<li><\/li>\n<\/ul>\n<pre class=\"code-snippet__js\" data-lang=\"c\"><code><span class=\"code-snippet_outer\">sizeGrWindow(<span class=\"code-snippet__number\">12<\/span>, <span class=\"code-snippet__number\">9<\/span>)par(cex = <span class=\"code-snippet__number\">0.6<\/span>)par(mar = c(<span class=\"code-snippet__number\">0<\/span>, <span class=\"code-snippet__number\">4<\/span>, <span class=\"code-snippet__number\">2<\/span>, <span class=\"code-snippet__number\">0<\/span>))plot(sampleTree, main = <span class=\"code-snippet__string\">\"Sample clustering to detect outliers\"<\/span>, sub = <span class=\"code-snippet__string\">\"\"<\/span>, xlab = <span class=\"code-snippet__string\">\"\"<\/span>, cex.lab = <span class=\"code-snippet__number\">1.5<\/span>, cex.axis = <span class=\"code-snippet__number\">1.5<\/span>, cex.main = <span class=\"code-snippet__number\">2<\/span>)<\/span><\/code><\/pre>\n<\/section>\n<p style=\"text-indent: 2em;text-wrap: wrap;\" powered-by=\"xiumi.us\">\u5982\u679c\u4f60\u60f3\u4fdd\u5b58\u56fe\u5f62\uff0c\u4f60\u53ef\u4ee5\u53d6\u6d88\u6ce8\u91ca\u4ee5\u4e0b\u4ee3\u7801\uff0c\u5e76\u8bbe\u7f6e\u4fdd\u5b58\u7684\u6587\u4ef6\u8def\u5f84\uff1a<\/p>\n<section class=\"code-snippet__fix code-snippet__js\">\n<ul class=\"code-snippet__line-index code-snippet__js\">\n<li><\/li>\n<\/ul>\n<pre class=\"code-snippet__js\" data-lang=\"c\"><code><span class=\"code-snippet_outer\"><span class=\"code-snippet__meta\"># pdf(file = <span class=\"code-snippet__meta-string\">\"Plots\/sampleClustering.pdf\"<\/span>, width = 12, height = 9)<\/span><\/span><\/code><\/pre>\n<\/section>\n<p style=\"text-indent: 2em;text-wrap: wrap;\" powered-by=\"xiumi.us\">\u6211\u4eec\u4e00\u8d77\u6765\u770b\u4e00\u4e0b\u7ed8\u5236\u7684\u56fe\u7247\u662f\u4ec0\u4e48\u6837\u5427\uff01<\/p>\n<section style=\"text-align: center;margin-top: 10px;margin-bottom: 10px;line-height: 0;\" powered-by=\"xiumi.us\">\n<section style=\"vertical-align: middle;display: inline-block;line-height: 0;\"><img decoding=\"async\" class=\"rich_pages wxw-img\" data-ratio=\"0.7518518518518519\" data-s=\"300,640\" src=\"https:\/\/i0.wp.com\/www.biocloudservice.com\/wordpress\/wp-content\/uploads\/2024\/06\/5_QU2xygpbLbu7trK8AnCCuyM17NE0bA.png?w=640\" onerror=\"this.src='https:\/\/mmbiz.qpic.cn\/sz_mmbiz_png\/oCSOtP61aEWXBvIyDiawbGJO18IPExv3BnsrZKTkOfcNNiaFUnJFaMia2ofQU2xygpbLbu7trK8AnCCuyM17NE0bA\/640?wx_fmt=png'\" data-type=\"png\" data-w=\"1080\" style=\"vertical-align: middle;width: 100%;\" data-recalc-dims=\"1\" \/><\/section>\n<\/section>\n<p style=\"text-indent: 2em;text-wrap: wrap;\" powered-by=\"xiumi.us\">\u63a5\u4e0b\u6765\uff0c\u6211\u4eec\u53ef\u4ee5\u7ed8\u5236\u9608\u503c\u5207\u5272\u7ebf\u5e76\u786e\u5b9a\u5207\u5272\u540e\u7684\u96c6\u7fa4\uff1a<\/p>\n<section class=\"code-snippet__fix code-snippet__js\">\n<ul class=\"code-snippet__line-index code-snippet__js\">\n<li><\/li>\n<\/ul>\n<pre class=\"code-snippet__js\" data-lang=\"c\"><code><span class=\"code-snippet_outer\">abline(h = <span class=\"code-snippet__number\">15<\/span>, col = <span class=\"code-snippet__string\">\"red\"<\/span>)clust = cutreeStatic(sampleTree, cutHeight = <span class=\"code-snippet__number\">15<\/span>, minSize = <span class=\"code-snippet__number\">10<\/span>)table(clust)<\/span><\/code><\/pre>\n<\/section>\n<section powered-by=\"xiumi.us\">\n<p style=\"margin-bottom: 12px;text-wrap: wrap;\"><br \/><\/p>\n<p style=\"text-indent: 2em;margin-bottom: 12px;text-wrap: wrap;\">\u6700\u540e\uff0c\u6211\u4eec\u53ef\u4ee5\u6839\u636e\u5207\u5272\u540e\u7684\u96c6\u7fa4\u9009\u62e9\u4fdd\u7559\u7684\u6837\u672c\uff0c\u5e76\u5c06\u5176\u653e\u5165\u65b0\u7684\u6570\u636e\u77e9\u9635datExpr\u4e2d\uff1a<\/p>\n<p><br \/><\/p>\n<\/section>\n<section class=\"code-snippet__fix code-snippet__js\">\n<ul class=\"code-snippet__line-index code-snippet__js\">\n<li><\/li>\n<\/ul>\n<pre class=\"code-snippet__js\" data-lang=\"c\"><code><span class=\"code-snippet_outer\">keepSamples = (clust == <span class=\"code-snippet__number\">1<\/span>)datExpr = datExpr0[keepSamples, ]<\/span><\/code><\/pre>\n<\/section>\n<section style=\"text-align: left;justify-content: flex-start;display: flex;flex-flow: row;margin-top: 10px;margin-bottom: 10px;\" powered-by=\"xiumi.us\">\n<section style=\"display: inline-block;vertical-align: bottom;width: auto;align-self: flex-end;flex: 0 0 auto;min-width: 5%;height: auto;padding-right: 7px;\"><svg viewbox=\"0 0 1 1\" style=\"float:left;line-height:0;width:0;vertical-align:top;\"><\/svg><\/section>\n<section style=\"display: inline-block;vertical-align: bottom;width: auto;align-self: flex-end;flex: 100 100 0%;height: auto;\">\n<section style=\"height: auto;transform: perspective(0px);transform-style: flat;\" powered-by=\"xiumi.us\">\n<section style=\"justify-content: flex-start;display: flex;flex-flow: row;transform: rotateX(180deg);\">\n<section style=\"display: inline-block;vertical-align: middle;width: auto;align-self: center;flex: 0 0 auto;min-width: 5%;height: auto;\">\n<section style=\"text-align: center;\" powered-by=\"xiumi.us\">\n<section style=\"display: inline-block;width: 10px;height: 10px;vertical-align: top;overflow: hidden;border-radius: 632px;background-color: rgb(221, 240, 245);\">\n<section style=\"text-align: justify;\" powered-by=\"xiumi.us\">\n<p><br \/><\/p>\n<\/section>\n<\/section>\n<\/section>\n<\/section>\n<section style=\"display: inline-block;vertical-align: middle;width: auto;align-self: center;flex: 0 0 auto;min-width: 5%;height: auto;\">\n<section style=\"text-align: center;\" powered-by=\"xiumi.us\">\n<section style=\"display: inline-block;width: 10px;height: 10px;vertical-align: top;overflow: hidden;border-radius: 632px;background-color: rgb(221, 240, 245);\">\n<section style=\"text-align: justify;\" powered-by=\"xiumi.us\">\n<p><br \/><\/p>\n<\/section>\n<\/section>\n<\/section>\n<\/section>\n<section style=\"display: inline-block;vertical-align: middle;width: auto;align-self: center;flex: 0 0 auto;min-width: 5%;height: auto;\">\n<section style=\"text-align: center;\" powered-by=\"xiumi.us\">\n<section style=\"display: inline-block;width: 10px;height: 10px;vertical-align: top;overflow: hidden;border-radius: 632px;background-color: rgb(221, 240, 245);\">\n<section style=\"text-align: justify;\" powered-by=\"xiumi.us\">\n<p><br \/><\/p>\n<\/section>\n<\/section>\n<\/section>\n<\/section>\n<\/section>\n<\/section>\n<\/section>\n<\/section>\n<section style=\"text-align: left;justify-content: flex-start;display: flex;flex-flow: row;margin-top: 10px;margin-bottom: 10px;\" powered-by=\"xiumi.us\">\n<section style=\"display: inline-block;width: 100%;vertical-align: top;align-self: flex-start;flex: 0 0 auto;border-style: solid;border-width: 10px;border-color: rgb(228, 248, 254);padding: 18px;\">\n<section style=\"text-align: justify;\" powered-by=\"xiumi.us\">\n<p style=\"text-indent: 2em;text-wrap: wrap;\">\u8fd9\u5c31\u662f\u4e00\u4e2a\u4f7f\u7528WGCNA\u5305\u5bf9\u57fa\u56e0\u8868\u8fbe\u6570\u636e\u8fdb\u884c\u5206\u6790\u7684\u7b80\u5355\u793a\u4f8b\u3002\u5927\u5bb6\u53ef\u4ee5\u6839\u636e\u81ea\u5df1\u7684\u9700\u6c42\u548c\u6570\u636e\u8fdb\u884c\u76f8\u5e94\u7684\u4fee\u6539\u548c\u6269\u5c55\u54e6\u3002\u5e0c\u671b\u672c\u6559\u7a0b\u80fd\u591f\u5e2e\u52a9\u4f60\u5f00\u59cb\u4f7f\u7528WGCNA\u5305\u8fdb\u884c\u57fa\u56e0\u8868\u8fbe\u6570\u636e\u5206\u6790\uff01\u5feb\u548c\u5c0f\u5e08\u59b9\u4e00\u8d77\u5b66\u8d77\u6765\u5427\uff01<\/p>\n<\/section>\n<\/section>\n<\/section>\n<\/section>\n<p style=\"margin-bottom: 24px;\"><img decoding=\"async\" class=\"rich_pages wxw-img\" data-ratio=\"0.5555555555555556\" data-s=\"300,640\" src=\"https:\/\/i0.wp.com\/www.biocloudservice.com\/wordpress\/wp-content\/uploads\/2024\/06\/6_akXKU5NcO1KwuWc1Rk7ZJ56LC2pYrQ-13.png?w=640\" onerror=\"this.src='https:\/\/mmbiz.qpic.cn\/sz_mmbiz_png\/oCSOtP61aEXjjmsEC5aXz0RE4be2ib1fJPnBD8yX0Z6OF2zocd2ngHpLOakXKU5NcO1KwuWc1Rk7ZJ56LC2pYrQ\/640?wx_fmt=png'\" data-type=\"png\" data-w=\"900\" style=\"\" data-recalc-dims=\"1\" \/><\/p>\n<p style=\"margin-bottom: 24px;\"><img decoding=\"async\" class=\"rich_pages wxw-img\" data-ratio=\"0.3488888888888889\" data-s=\"300,640\" src=\"https:\/\/i0.wp.com\/www.biocloudservice.com\/wordpress\/wp-content\/uploads\/2024\/06\/7_BoDuficWb7YjnP0CXo0mIcibhsXn8w-2.jpg?w=640\" onerror=\"this.src='https:\/\/mmbiz.qpic.cn\/sz_mmbiz_jpg\/oCSOtP61aEUlxqHhbZryhECGXicgBrLn1ZkgkpYia2qsgSgNWPQMp0RiaIAmlBoDuficWb7YjnP0CXo0mIcibhsXn8w\/640?wx_fmt=jpeg'\" data-type=\"jpeg\" data-w=\"900\" style=\"\" data-recalc-dims=\"1\" \/><\/p>\n<p style=\"display: none;margin-bottom: 24px;\"><mp-style-type data-value=\"3\"><\/mp-style-type><\/p>\n<div class=\"msg_source_url\"><a href=\"https:\/\/v.xiumi.us\/board\/v5\/6rNpH\/474883574\" target=\"_blank\" rel=\"noopener\">\u9605\u8bfb\u539f\u6587<\/a><\/div>\n<p><\/content><\/p>\n<div class=\"msg_source_url\"><a href=\"https:\/\/v.xiumi.us\/board\/v5\/6rNpH\/474883574\" target=\"_blank\" rel=\"noopener\">\u9605\u8bfb\u539f\u6587<\/a><\/div>\n<\/div>\n<p><\/body><br \/>\n<\/html><\/p>\n","protected":false},"excerpt":{"rendered":"<p>\u57fa\u56e0\u63a2\u9669\uff1a\u7528WGCNA\u89e3\u5bc6\u57fa\u56e0\u8868\u8fbe\u4e4b\u8c1c \u5c0f\u5e08\u59b9 \u751f\u4fe1\u679c 2023- […]<\/p>\n","protected":false},"author":1,"featured_media":0,"comment_status":"closed","ping_status":"","sticky":false,"template":"","format":"standard","meta":{"jetpack_post_was_ever_published":false,"_jetpack_newsletter_access":""},"categories":[1],"tags":[],"jetpack_featured_media_url":"","_links":{"self":[{"href":"http:\/\/www.biocloudservice.com\/wordpress\/index.php?rest_route=\/wp\/v2\/posts\/59509"}],"collection":[{"href":"http:\/\/www.biocloudservice.com\/wordpress\/index.php?rest_route=\/wp\/v2\/posts"}],"about":[{"href":"http:\/\/www.biocloudservice.com\/wordpress\/index.php?rest_route=\/wp\/v2\/types\/post"}],"author":[{"embeddable":true,"href":"http:\/\/www.biocloudservice.com\/wordpress\/index.php?rest_route=\/wp\/v2\/users\/1"}],"replies":[{"embeddable":true,"href":"http:\/\/www.biocloudservice.com\/wordpress\/index.php?rest_route=%2Fwp%2Fv2%2Fcomments&post=59509"}],"version-history":[{"count":1,"href":"http:\/\/www.biocloudservice.com\/wordpress\/index.php?rest_route=\/wp\/v2\/posts\/59509\/revisions"}],"predecessor-version":[{"id":59517,"href":"http:\/\/www.biocloudservice.com\/wordpress\/index.php?rest_route=\/wp\/v2\/posts\/59509\/revisions\/59517"}],"wp:attachment":[{"href":"http:\/\/www.biocloudservice.com\/wordpress\/index.php?rest_route=%2Fwp%2Fv2%2Fmedia&parent=59509"}],"wp:term":[{"taxonomy":"category","embeddable":true,"href":"http:\/\/www.biocloudservice.com\/wordpress\/index.php?rest_route=%2Fwp%2Fv2%2Fcategories&post=59509"},{"taxonomy":"post_tag","embeddable":true,"href":"http:\/\/www.biocloudservice.com\/wordpress\/index.php?rest_route=%2Fwp%2Fv2%2Ftags&post=59509"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}

{"id":59509,"date":"2024-06-17T08:25:45","date_gmt":"2024-06-17T00:25:45","guid":{"rendered":"http:\/\/www.biocloudservice.com\/wordpress\/?p=59509"},"modified":"2024-06-17T08:25:45","modified_gmt":"2024-06-17T00:25:45","slug":"%e5%9f%ba%e5%9b%a0%e6%8e%a2%e9%99%a9%ef%bc%9a%e7%94%a8wgcna%e8%a7%a3%e5%af%86%e5%9f%ba%e5%9b%a0%e8%a1%a8%e8%be%be%e4%b9%8b%e8%b0%9c","status":"publish","type":"post","link":"http:\/\/www.biocloudservice.com\/wordpress\/?p=59509","title":{"rendered":"\u57fa\u56e0\u63a2\u9669\uff1a\u7528WGCNA\u89e3\u5bc6\u57fa\u56e0\u8868\u8fbe\u4e4b\u8c1c"},"content":{"rendered":"

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\n<\/title><br \/>\n<meta charset=\"utf-8\"><br \/>\n<meta name=\"viewport\" content=\"width=device-width,initial-scale=1.0,maximum-scale=1.0,user-scalable=0,viewport-fit=cover\"><\/p>\n<style>\n*{margin:0;padding:0}html{-ms-text-size-adjust:100%;-webkit-text-size-adjust:100%;line-height:1.6}img{z-index:999;position:relative;max-width:100%;margin:10px 0;}body{letter-spacing:.034em}h1,h2,h3,h4,h5,h6{font-weight:400;font-size:16px}a{color:#576b95;text-decoration:none;-webkit-tap-highlight-color:rgba(0,0,0,0)}td,th{word-wrap:break-word;padding:5px 10px;border:1px solid #DDD;}table{margin-bottom:10px;border-collapse:collapse;display:table;width:100%!important;}.appmsg_skin_default .rich_media_area_primary{background-color:#fff}.appmsg_skin_default .rich_media_area_primary .weui-loadmore_line .weui-loadmore__tips{background-color:#fff}.rich_media_area_primary{padding:20px 16px 12px;background-color:#fafafa}@media (max-width:375px){.rich_media_area_primary{padding:20px 60px 15px 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auto;\">\n<section style=\"text-align: center;\" powered-by=\"xiumi.us\">\n<section style=\"display: inline-block;width: 10px;height: 10px;vertical-align: top;overflow: hidden;border-radius: 632px;background-color: rgb(221, 240, 245);\">\n<section style=\"text-align: justify;\" powered-by=\"xiumi.us\">\n<p><br \/><\/p>\n<\/section>\n<\/section>\n<\/section>\n<\/section>\n<\/section>\n<\/section>\n<section style=\"margin-bottom: 5px;transform: translate3d(1px, 0px, 0px);\" powered-by=\"xiumi.us\">\n<section style=\"text-align: justify;color: rgb(61, 61, 61);\">\n<p>\u70b9\u51fb\u84dd\u5b57 \u5173\u6ce8\u6211\u4eec<\/p>\n<\/section>\n<\/section>\n<\/section>\n<\/section>\n<\/section>\n<\/section>\n<section style=\"text-align: left;justify-content: flex-start;display: flex;flex-flow: row;margin-top: 10px;margin-bottom: 10px;\" powered-by=\"xiumi.us\">\n<section style=\"display: inline-block;width: 100%;vertical-align: top;align-self: flex-start;flex: 0 0 auto;border-style: solid;border-width: 10px;border-color: rgb(228, 248, 254);padding: 18px;\">\n<section style=\"text-align: justify;\" powered-by=\"xiumi.us\">\n<p>hello\uff0c\u4eca\u5929\u5c0f\u5e08\u59b9\u5c06\u6559\u5927\u5bb6\u5b66\u4e60\u5982\u4f55\u4f7f\u7528WGCNA\u5305\u5bf9\u57fa\u56e0\u8868\u8fbe\u6570\u636e\u8fdb\u884c\u5206\u6790\u3002\u611f\u5174\u8da3\u7684\u8bdd\u5c31\u548c\u5c0f\u5e08\u59b9\u4e00\u8d77\u770b\u4e0b\u53bb\u5427\uff01<\/p>\n<\/section>\n<\/section>\n<\/section>\n<section style=\"text-align: left;justify-content: flex-start;display: flex;flex-flow: row;margin-top: 10px;margin-bottom: 10px;\" powered-by=\"xiumi.us\">\n<section style=\"display: inline-block;vertical-align: bottom;width: auto;align-self: flex-end;flex: 0 0 auto;min-width: 5%;height: auto;padding-right: 7px;\"><svg viewbox=\"0 0 1 1\" style=\"float:left;line-height:0;width:0;vertical-align:top;\"><\/svg><\/section>\n<section style=\"display: inline-block;vertical-align: bottom;width: auto;align-self: 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inline-block;width: 10px;height: 10px;vertical-align: top;overflow: hidden;border-radius: 632px;background-color: rgb(221, 240, 245);\">\n<section style=\"text-align: justify;\" powered-by=\"xiumi.us\">\n<p><br \/><\/p>\n<\/section>\n<\/section>\n<\/section>\n<\/section>\n<section style=\"display: inline-block;vertical-align: middle;width: auto;align-self: center;flex: 0 0 auto;min-width: 5%;height: auto;\">\n<section style=\"text-align: center;\" powered-by=\"xiumi.us\">\n<section style=\"display: inline-block;width: 10px;height: 10px;vertical-align: top;overflow: hidden;border-radius: 632px;background-color: rgb(221, 240, 245);\">\n<section style=\"text-align: justify;\" powered-by=\"xiumi.us\">\n<p><br \/><\/p>\n<\/section>\n<\/section>\n<\/section>\n<\/section>\n<\/section>\n<\/section>\n<section style=\"margin-bottom: 5px;\" powered-by=\"xiumi.us\">\n<section style=\"text-align: justify;font-size: 24px;color: rgb(0, 0, 0);\">\n<p>\u4ec0\u4e48\u662fWGCNA\uff1f<\/p>\n<\/section>\n<\/section>\n<\/section>\n<\/section>\n<section style=\"text-align: left;justify-content: flex-start;display: flex;flex-flow: row;margin-top: 10px;margin-bottom: 10px;\" powered-by=\"xiumi.us\">\n<section style=\"display: inline-block;width: 100%;vertical-align: top;align-self: flex-start;flex: 0 0 auto;border-style: solid;border-width: 10px;border-color: rgb(228, 248, 254);padding: 18px;\">\n<section style=\"text-align: justify;\" powered-by=\"xiumi.us\">\n<p style=\"margin-bottom: 12px;text-indent: 2em;text-wrap: wrap;\">WGCNA\uff08Weighted Gene Co-expression Network 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wrap;\">WGCNA\u5305\u63d0\u4f9b\u4e86\u4e00\u5957\u4e30\u5bcc\u800c\u5168\u9762\u7684\u5de5\u5177\uff0c\u7528\u4e8e\u6784\u5efa\u3001\u53ef\u89c6\u5316\u548c\u89e3\u91ca\u57fa\u56e0\u5171\u8868\u8fbe\u7f51\u7edc\u3002\u5b83\u901a\u8fc7\u8ba1\u7b97\u57fa\u56e0\u8868\u8fbe\u6570\u636e\u4e2d\u57fa\u56e0\u4e4b\u95f4\u7684\u76f8\u5173\u6027\uff0c\u5c06\u9ad8\u76f8\u5173\u6027\u7684\u57fa\u56e0\u805a\u7c7b\u6210\u6a21\u5757\uff0c\u5e76\u8bc6\u522b\u51fa\u6a21\u5757\u4e0e\u7279\u5b9a\u751f\u7269\u5b66\u8fc7\u7a0b\u6216\u6027\u72b6\u4e4b\u95f4\u7684\u5173\u8054\u3002<\/p>\n<p style=\"text-indent: 2em;text-wrap: wrap;\"><span style=\"font-size: 18px;\">\u4f7f\u7528WGCNA\u5305\uff0c\u4f60\u53ef\u4ee5\u6267\u884c\u4ee5\u4e0b\u4e3b\u8981\u4efb\u52a1\uff1a<\/span><\/p>\n<\/section>\n<\/section>\n<\/section>\n<section style=\"text-align: left;justify-content: flex-start;display: flex;flex-flow: row;margin-top: 10px;margin-bottom: 10px;\" powered-by=\"xiumi.us\">\n<section style=\"display: inline-block;width: 100%;vertical-align: top;align-self: flex-start;flex: 0 0 auto;border-style: solid;border-width: 10px;border-color: rgb(228, 248, 254);padding: 18px;\">\n<section style=\"text-align: justify;\" powered-by=\"xiumi.us\">\n<p style=\"margin-bottom: 12px;text-wrap: wrap;\"><strong>1\u6784\u5efa\u57fa\u56e0\u5171\u8868\u8fbe\u7f51\u7edc\uff1a<\/strong><\/p>\n<p style=\"margin-bottom: 12px;text-wrap: wrap;\">WGCNA\u901a\u8fc7\u8ba1\u7b97\u57fa\u56e0\u95f4\u7684\u76f8\u5173\u7cfb\u6570\u6765\u6784\u5efa\u57fa\u56e0\u5171\u8868\u8fbe\u7f51\u7edc\u3002\u5b83\u53ef\u4ee5\u6839\u636e\u4e0d\u540c\u7684\u76f8\u5173\u7cfb\u6570\u65b9\u6cd5\uff08\u5982Pearson\u76f8\u5173\u7cfb\u6570\u3001Spearman\u76f8\u5173\u7cfb\u6570\u7b49\uff09\u8fdb\u884c\u8ba1\u7b97\uff0c\u5e76\u6839\u636e\u7528\u6237\u7684\u9009\u62e9\u521b\u5efa\u4e00\u4e2a\u52a0\u6743\u7f51\u7edc\u3002<\/p>\n<p style=\"margin-bottom: 12px;text-wrap: wrap;\"><br \/><\/p>\n<p style=\"margin-bottom: 12px;text-wrap: wrap;\"><strong>2\u6a21\u5757\u68c0\u6d4b\uff1a<\/strong><\/p>\n<p style=\"margin-bottom: 12px;text-wrap: wrap;\">WGCNA\u5c06\u9ad8\u76f8\u5173\u6027\u7684\u57fa\u56e0\u805a\u7c7b\u6210\u6a21\u5757\uff0c\u6bcf\u4e2a\u6a21\u5757\u4ee3\u8868\u4e00\u4e2a\u5177\u6709\u7c7b\u4f3c\u8868\u8fbe\u6a21\u5f0f\u7684\u57fa\u56e0\u96c6\u5408\u3002\u8fd9\u4e9b\u6a21\u5757\u53ef\u4ee5\u5e2e\u52a9\u6211\u4eec\u8bc6\u522b\u751f\u7269\u5b66\u529f\u80fd\u76f8\u5173\u7684\u57fa\u56e0\u7ec4\u3002<\/p>\n<p style=\"margin-bottom: 12px;text-wrap: wrap;\"><br \/><\/p>\n<p style=\"margin-bottom: 12px;text-wrap: wrap;\"><strong>3\u6a21\u5757\u4e0e\u6027\u72b6\u5173\u8054\uff1a<\/strong><\/p>\n<p style=\"margin-bottom: 12px;text-wrap: wrap;\">WGCNA\u53ef\u4ee5\u901a\u8fc7\u8ba1\u7b97\u6a21\u5757\u4e0e\u7ed9\u5b9a\u6027\u72b6\u4e4b\u95f4\u7684\u5173\u8054\u6765\u9274\u5b9a\u4e0e\u6027\u72b6\u76f8\u5173\u7684\u6a21\u5757\u3002\u8fd9\u6709\u52a9\u4e8e\u6211\u4eec\u7406\u89e3\u57fa\u56e0\u4e0e\u7279\u5b9a\u6027\u72b6\uff08\u5982\u75be\u75c5\u72b6\u6001\u3001\u8868\u578b\u53d8\u5316\u7b49\uff09\u4e4b\u95f4\u7684\u5173\u7cfb\u3002<\/p>\n<p style=\"margin-bottom: 12px;text-wrap: wrap;\"><br \/><\/p>\n<p style=\"margin-bottom: 12px;text-wrap: wrap;\"><strong>4\u6570\u636e\u53ef\u89c6\u5316\uff1a<\/strong><\/p>\n<p style=\"margin-bottom: 12px;text-wrap: wrap;\">WGCNA\u63d0\u4f9b\u4e86\u591a\u79cd\u53ef\u89c6\u5316\u5de5\u5177\uff0c\u4f7f\u7528\u6237\u80fd\u591f\u76f4\u89c2\u5730\u63a2\u7d22\u548c\u5448\u73b0\u57fa\u56e0\u5171\u8868\u8fbe\u7f51\u7edc\u3001\u6a21\u5757\u548c\u6a21\u5757\u4e0e\u6027\u72b6\u7684\u5173\u8054\u3002\u8fd9\u4e9b\u5de5\u5177\u5305\u62ec\u70ed\u56fe\u3001\u7f51\u7edc\u56fe\u3001\u6563\u70b9\u56fe\u7b49\u3002<\/p>\n<p style=\"text-indent: 2em;text-wrap: wrap;\">WGCNA\u5728\u751f\u7269\u5b66\u7814\u7a76\u4e2d\u5e7f\u6cdb\u5e94\u7528\uff0c\u7279\u522b\u662f\u5728\u53d1\u73b0\u548c\u89e3\u91ca\u57fa\u56e0\u8c03\u63a7\u7f51\u7edc\u65b9\u9762\u3002\u5b83\u53ef\u4ee5\u5e2e\u52a9\u63ed\u793a\u75be\u75c5\u673a\u5236\u3001\u9274\u5b9a\u751f\u7269\u6807\u5fd7\u7269\u3001\u9884\u6d4b\u836f\u7269\u54cd\u5e94\u7b49\u3002\u901a\u8fc7\u4f7f\u7528WGCNA\u5305\uff0c\u7814\u7a76\u4eba\u5458\u53ef\u4ee5\u66f4\u597d\u5730\u7406\u89e3\u57fa\u56e0\u8868\u8fbe\u6570\u636e\uff0c\u5e76\u4ece\u4e2d\u83b7\u5f97\u6709\u5173\u751f\u7269\u5b66\u8fc7\u7a0b\u7684\u6df1\u5165\u6d1e\u5bdf\u3002<\/p>\n<\/section>\n<\/section>\n<\/section>\n<p powered-by=\"xiumi.us\"><br \/><\/p>\n<section style=\"text-align: left;justify-content: flex-start;display: flex;flex-flow: row;margin-top: 10px;margin-bottom: 10px;\" powered-by=\"xiumi.us\">\n<section style=\"display: inline-block;vertical-align: bottom;width: auto;align-self: flex-end;flex: 0 0 auto;min-width: 5%;height: auto;padding-right: 7px;\"><svg viewbox=\"0 0 1 1\" style=\"float:left;line-height:0;width:0;vertical-align:top;\"><\/svg><\/section>\n<section style=\"display: inline-block;vertical-align: bottom;width: auto;align-self: flex-end;flex: 100 100 0%;height: auto;\">\n<section style=\"height: auto;transform: perspective(0px);transform-style: flat;\" powered-by=\"xiumi.us\">\n<section style=\"justify-content: flex-start;display: flex;flex-flow: row;transform: rotateX(180deg);\">\n<section style=\"display: inline-block;vertical-align: middle;width: auto;align-self: center;flex: 0 0 auto;min-width: 5%;height: auto;\">\n<section style=\"text-align: center;\" powered-by=\"xiumi.us\">\n<section style=\"display: inline-block;width: 10px;height: 10px;vertical-align: top;overflow: hidden;border-radius: 632px;background-color: rgb(221, 240, 245);\">\n<section style=\"text-align: justify;\" powered-by=\"xiumi.us\">\n<p><br \/><\/p>\n<\/section>\n<\/section>\n<\/section>\n<\/section>\n<section style=\"display: inline-block;vertical-align: middle;width: auto;align-self: center;flex: 0 0 auto;min-width: 5%;height: auto;\">\n<section style=\"text-align: center;\" powered-by=\"xiumi.us\">\n<section style=\"display: inline-block;width: 10px;height: 10px;vertical-align: top;overflow: hidden;border-radius: 632px;background-color: rgb(221, 240, 245);\">\n<section style=\"text-align: justify;\" powered-by=\"xiumi.us\">\n<p><br \/><\/p>\n<\/section>\n<\/section>\n<\/section>\n<\/section>\n<section style=\"display: inline-block;vertical-align: middle;width: auto;align-self: center;flex: 0 0 auto;min-width: 5%;height: auto;\">\n<section style=\"text-align: center;\" powered-by=\"xiumi.us\">\n<section style=\"display: inline-block;width: 10px;height: 10px;vertical-align: top;overflow: hidden;border-radius: 632px;background-color: rgb(221, 240, 245);\">\n<section style=\"text-align: justify;\" powered-by=\"xiumi.us\">\n<p><br \/><\/p>\n<\/section>\n<\/section>\n<\/section>\n<\/section>\n<\/section>\n<\/section>\n<section style=\"margin-bottom: 5px;\" powered-by=\"xiumi.us\">\n<section style=\"text-align: justify;font-size: 24px;color: rgb(0, 0, 0);\">\n<p>WGCNA\u8fdb\u884c\u57fa\u56e0\u8868\u8fbe\u6570\u636e\u5206\u6790<\/p>\n<\/section>\n<\/section>\n<\/section>\n<\/section>\n<p powered-by=\"xiumi.us\"><span style=\"color: rgb(249, 110, 87);font-size: 18px;\">\u5b89\u88c5\u4e0e\u5bfc\u5165WGCNA\u5305<\/span><\/p>\n<section style=\"text-align: left;justify-content: flex-start;display: flex;flex-flow: row;margin-top: 10px;margin-bottom: 10px;\" powered-by=\"xiumi.us\">\n<section style=\"display: inline-block;width: 100%;vertical-align: top;align-self: flex-start;flex: 0 0 auto;border-style: solid;border-width: 10px;border-color: rgb(228, 248, 254);padding: 18px;\">\n<section style=\"text-align: justify;\" powered-by=\"xiumi.us\">\n<p style=\"text-indent: 2em;text-wrap: wrap;\">BiocManager::install(“WGCNA”) library(‘WGCNA’)# \u5728\u8bfb\u5165\u6570\u636e\u65f6\uff0c\u9047\u5230\u5b57\u7b26\u4e32\u4e4b\u540e\uff0c\u4e0d\u5c06\u5176\u8f6c\u6362\u4e3afactors\uff0c\u4ecd\u7136\u4fdd\u7559\u4e3a\u5b57\u7b26\u4e32\u683c\u5f0foptions(stringsAsFactors = FALSE)<\/p>\n<\/section>\n<\/section>\n<\/section>\n<section powered-by=\"xiumi.us\">\n<p style=\"margin-bottom: 12px;text-wrap: wrap;\"><span style=\"font-size: 18px;color: rgb(249, 110, 87);\">\u6570\u636e\u4e0b\u8f7d\u4e0e\u5bfc\u5165<\/span><\/p>\n<p style=\"text-indent: 2em;text-wrap: wrap;\">\u9996\u5148\u6211\u4eec\u6765\u770b\u4e00\u4e0b\u6570\u636e\u7684\u6587\u4ef6\u683c\u5f0f\uff1a<\/p>\n<\/section>\n<section style=\"text-align: center;margin-top: 10px;margin-bottom: 10px;line-height: 0;\" powered-by=\"xiumi.us\">\n<section style=\"vertical-align: middle;display: inline-block;line-height: 0;\"><img decoding=\"async\" class=\"rich_pages wxw-img\" data-ratio=\"0.4648148148148148\" data-s=\"300,640\" src=\"https:\/\/i0.wp.com\/www.biocloudservice.com\/wordpress\/wp-content\/uploads\/2024\/06\/1_ic1mT60ebiazlBBHmsdiam99Jll3CQ.png?w=640\" onerror=\"this.src='https:\/\/mmbiz.qpic.cn\/sz_mmbiz_png\/oCSOtP61aEWXBvIyDiawbGJO18IPExv3BfKpibcqmNRiac4CKzbThvpvoDBOUIic1mT60ebiazlBBHmsdiam99Jll3CQ\/640?wx_fmt=png'\" data-type=\"png\" data-w=\"1080\" style=\"vertical-align: middle;width: 100%;\" data-recalc-dims=\"1\" \/><\/section>\n<\/section>\n<p style=\"margin-bottom: 12px;text-indent: 2em;text-wrap: wrap;\" powered-by=\"xiumi.us\">\u7136\u540e\uff0c\u6211\u4eec\u9700\u8981\u5bfc\u5165\u6570\u636e\uff1a<\/p>\n<section class=\"code-snippet__fix code-snippet__js\">\n<ul class=\"code-snippet__line-index code-snippet__js\">\n<li><\/li>\n<\/ul>\n<pre class=\"code-snippet__js\" data-lang=\"c\"><code><span class=\"code-snippet_outer\"># \u5bfc\u5165\u793a\u4f8b\u6570\u636e\uff0c\u8fd9\u91cc\u586b\u5199\u81ea\u5df1\u5b58\u653e\u8868\u8fbe\u77e9\u9635\u7684\u8def\u5f84femData = read.csv(<span class=\"code-snippet__string\">\"LiverFemale3600.csv\"<\/span>) # femData\u4ee3\u8868\u8be5\u6587\u4ef6<\/span><\/code><\/pre>\n<\/section>\n<p style=\"margin-bottom: 12px;text-indent: 2em;text-wrap: wrap;\" powered-by=\"xiumi.us\"><span style=\"text-indent: 2em;\">\u4f60\u53ef\u4ee5\u4f7f\u7528dim\u51fd\u6570\u67e5\u770b\u6570\u636e\u7684\u5f62\u72b6\uff08\u884c\u6570\u548c\u5217\u6570\uff09\uff1a<\/span><\/p>\n<section class=\"code-snippet__fix code-snippet__js\">\n<ul class=\"code-snippet__line-index code-snippet__js\">\n<li><\/li>\n<\/ul>\n<pre class=\"code-snippet__js\" data-lang=\"c\"><code><span class=\"code-snippet_outer\">dim(femData) <span class=\"code-snippet__meta\"># dim\u67e5\u770b\u77e9\u9635\u5f62\u72b6<\/span><\/span><\/code><\/pre>\n<\/section>\n<p style=\"margin-bottom: 12px;text-indent: 2em;text-wrap: wrap;\" powered-by=\"xiumi.us\"><span style=\"text-indent: 2em;\">\u4f60\u53ef\u4ee5\u4f7f\u7528names\u51fd\u6570\u67e5\u770b\u6bcf\u4e00\u5217\u7684\u6807\u9898\uff08\u5217\u6807\uff09\uff1a<\/span><\/p>\n<section class=\"code-snippet__fix code-snippet__js\">\n<ul class=\"code-snippet__line-index code-snippet__js\">\n<li><\/li>\n<\/ul>\n<pre class=\"code-snippet__js\" data-lang=\"c\"><code><span class=\"code-snippet_outer\">names(femData) <span class=\"code-snippet__meta\"># names\u67e5\u770b\u5217\u6807\uff0c\u5373\u6bcf\u4e00\u5217\u7684\u6807\u9898<\/span><\/span><\/code><\/pre>\n<\/section>\n<section style=\"text-align: center;margin-top: 10px;margin-bottom: 10px;line-height: 0;\" powered-by=\"xiumi.us\">\n<section style=\"vertical-align: middle;display: inline-block;line-height: 0;\"><img decoding=\"async\" class=\"rich_pages wxw-img\" data-ratio=\"0.1675925925925926\" data-s=\"300,640\" src=\"https:\/\/i0.wp.com\/www.biocloudservice.com\/wordpress\/wp-content\/uploads\/2024\/06\/2_odvWktrkxMVBstUDDA7gGF4hKGg89w.png?w=640\" onerror=\"this.src='https:\/\/mmbiz.qpic.cn\/sz_mmbiz_png\/oCSOtP61aEWXBvIyDiawbGJO18IPExv3BNfyuEyZG9sLXwruX9yErB2ibXodvWktrkxMVBstUDDA7gGF4hKGg89w\/640?wx_fmt=png'\" data-type=\"png\" data-w=\"1080\" style=\"vertical-align: middle;width: 100%;\" data-recalc-dims=\"1\" \/><\/section>\n<\/section>\n<section powered-by=\"xiumi.us\">\n<p style=\"margin-bottom: 12px;text-wrap: wrap;\"><span style=\"color: rgb(249, 110, 87);font-size: 18px;\">\u6570\u636e\u5904\u7406<\/span><\/p>\n<p style=\"text-indent: 2em;margin-bottom: 12px;text-wrap: wrap;\">\u63a5\u4e0b\u6765\uff0c\u6211\u4eec\u5c06\u63d0\u53d6\u6837\u672c-\u57fa\u56e0\u8868\u8fbe\u77e9\u9635\uff1a<\/p>\n<\/section>\n<section class=\"code-snippet__fix code-snippet__js\">\n<ul class=\"code-snippet__line-index code-snippet__js\">\n<li><\/li>\n<\/ul>\n<pre class=\"code-snippet__js\" data-lang=\"c\"><code><span class=\"code-snippet_outer\">datExpr0 = as.data.frame(t(femData[, -c(<span class=\"code-snippet__number\">1<\/span>:<span class=\"code-snippet__number\">8<\/span>)]))<\/span><\/code><\/pre>\n<\/section>\n<section style=\"text-align: center;margin-top: 10px;margin-bottom: 10px;line-height: 0;\" powered-by=\"xiumi.us\">\n<section style=\"vertical-align: middle;display: inline-block;line-height: 0;\"><img decoding=\"async\" class=\"rich_pages wxw-img\" data-ratio=\"0.18322981366459629\" data-s=\"300,640\" src=\"https:\/\/i0.wp.com\/www.biocloudservice.com\/wordpress\/wp-content\/uploads\/2024\/06\/3_rZrW0E9ib6BBPzTnCKnP2WNPrEx0dA.png?w=640\" onerror=\"this.src='https:\/\/mmbiz.qpic.cn\/sz_mmbiz_png\/oCSOtP61aEWXBvIyDiawbGJO18IPExv3BJwJZkWd4GQT6z790xTA7wRmO1rZrW0E9ib6BBPzTnCKnP2WNPrEx0dA\/640?wx_fmt=png'\" data-type=\"png\" data-w=\"966\" style=\"vertical-align: middle;width: 100%;\" data-recalc-dims=\"1\" \/><\/section>\n<\/section>\n<p style=\"text-indent: 2em;margin-bottom: 12px;text-wrap: wrap;\" powered-by=\"xiumi.us\">\u5982\u679c\u4f60\u4e0d\u9700\u8981\u4fdd\u7559\u57fa\u56e0\u540d\u4f5c\u4e3a\u5217\u6807\uff0c\u4f60\u53ef\u4ee5\u5220\u9664\u4e0b\u9762\u8fd9\u884c\u4ee3\u7801\uff1a<\/p>\n<section class=\"code-snippet__fix code-snippet__js\">\n<ul class=\"code-snippet__line-index code-snippet__js\">\n<li><\/li>\n<\/ul>\n<pre class=\"code-snippet__js\" data-lang=\"c\"><code><span class=\"code-snippet_outer\">rownames(datExpr0) = names(femData)[-c(<span class=\"code-snippet__number\">1<\/span>:<span class=\"code-snippet__number\">8<\/span>)]<\/span><\/code><\/pre>\n<\/section>\n<p style=\"text-indent: 2em;text-wrap: wrap;\" powered-by=\"xiumi.us\">\u63a5\u4e0b\u6765\uff0c\u6211\u4eec\u53ef\u4ee5\u68c0\u67e5\u662f\u5426\u6709\u592a\u591a\u7f3a\u5931\u503c\u7684\u57fa\u56e0\u548c\u6837\u672c\uff1a<\/p>\n<section class=\"code-snippet__fix code-snippet__js\">\n<ul class=\"code-snippet__line-index code-snippet__js\">\n<li><\/li>\n<\/ul>\n<pre class=\"code-snippet__js\" data-lang=\"c\"><code><span class=\"code-snippet_outer\">egsg = goodSamplesGenes(datExpr0, verbose = <span class=\"code-snippet__number\">3<\/span>)gsg$allOK<\/span><\/code><\/pre>\n<\/section>\n<section style=\"text-align: center;margin-top: 10px;margin-bottom: 10px;line-height: 0;\" powered-by=\"xiumi.us\">\n<section style=\"vertical-align: middle;display: inline-block;line-height: 0;\"><img decoding=\"async\" data-ratio=\"0.12863534675615212\" data-s=\"300,640\" src=\"https:\/\/i0.wp.com\/www.biocloudservice.com\/wordpress\/wp-content\/uploads\/2024\/06\/4_HbqOlmNjoCiafZrzvdK32atHkdy37Q.png?w=640\" onerror=\"this.src='https:\/\/mmbiz.qpic.cn\/sz_mmbiz_png\/oCSOtP61aEWXBvIyDiawbGJO18IPExv3BKib6hkd4NsQuIRpvurce7NBkGAHbqOlmNjoCiafZrzvdK32atHkdy37Q\/640?wx_fmt=png'\" data-type=\"png\" data-w=\"894\" style=\"vertical-align: middle;width: 100%;\" data-recalc-dims=\"1\" \/><\/section>\n<\/section>\n<p style=\"text-indent: 2em;text-wrap: wrap;\" powered-by=\"xiumi.us\">\u5982\u679c\u5b58\u5728\u7f3a\u5931\u503c\u592a\u591a\u7684\u57fa\u56e0\u6216\u6837\u672c\uff0c\u4f60\u53ef\u4ee5\u9009\u62e9\u5220\u9664\u8fd9\u4e9b\u57fa\u56e0\u6216\u6837\u672c\u3002\u4ee5\u4e0b\u662f\u4e00\u4e2a\u53ef\u9009\u6b65\u9aa4\uff0c\u5b83\u4f1a\u6253\u5370\u88ab\u5220\u9664\u7684\u57fa\u56e0\u548c\u6837\u672c\u7684\u540d\u79f0\uff0c\u5e76\u5220\u9664\u4e0d\u6ee1\u8db3\u8981\u6c42\u7684\u57fa\u56e0\u548c\u6837\u672c\uff1a<\/p>\n<section class=\"code-snippet__fix code-snippet__js\">\n<ul class=\"code-snippet__line-index code-snippet__js\">\n<li><\/li>\n<\/ul>\n<pre class=\"code-snippet__js\" data-lang=\"c\"><code><span class=\"code-snippet_outer\"><span class=\"code-snippet__keyword\">if<\/span> (!gsg$allOK) { <span class=\"code-snippet__keyword\">if<\/span> (sum(!gsg$goodGenes) > <span class=\"code-snippet__number\">0<\/span>) { printFlush(paste(<span class=\"code-snippet__string\">\"Removing genes:\"<\/span>, paste(names(datExpr0)[!gsg$goodGenes], collapse = <span class=\"code-snippet__string\">\",\"<\/span>))) } <span class=\"code-snippet__keyword\">if<\/span> (sum(!gsg$goodSamples) > <span class=\"code-snippet__number\">0<\/span>) { printFlush(paste(<span class=\"code-snippet__string\">\"Removing samples:\"<\/span>, paste(rownames(datExpr0)[!gsg$goodSamples], collapse = <span class=\"code-snippet__string\">\",\"<\/span>))) } datExpr0 = datExpr0[gsg$goodSamples, gsg$goodGenes]}<\/span><\/code><\/pre>\n<\/section>\n<p style=\"text-indent: 2em;text-wrap: wrap;\" powered-by=\"xiumi.us\">\u63a5\u4e0b\u6765\uff0c\u6211\u4eec\u5c06\u4f7f\u7528\u805a\u7c7b\u65b9\u6cd5\u6784\u5efa\u4e00\u4e2a\u6837\u672c\u6811\uff1a<\/p>\n<section class=\"code-snippet__fix code-snippet__js\">\n<ul class=\"code-snippet__line-index code-snippet__js\">\n<li><\/li>\n<\/ul>\n<pre class=\"code-snippet__js\" data-lang=\"c\"><code><span class=\"code-snippet_outer\">sampleTree = hclust(dist(datExpr0), method = <span class=\"code-snippet__string\">\"average\"<\/span>)<\/span><\/code><\/pre>\n<\/section>\n<p style=\"text-indent: 2em;text-wrap: wrap;\" powered-by=\"xiumi.us\">\u7136\u540e\uff0c\u6211\u4eec\u53ef\u4ee5\u7ed8\u5236\u6837\u672c\u6811\u3002\u4ee5\u4e0b\u4ee3\u7801\u5c06\u6253\u5f00\u4e00\u4e2a\u56fe\u5f62\u8f93\u51fa\u7a97\u53e3\uff0c\u5e76\u7ed8\u5236\u6837\u672c\u6811\uff1a<\/p>\n<section class=\"code-snippet__fix code-snippet__js\">\n<ul class=\"code-snippet__line-index code-snippet__js\">\n<li><\/li>\n<\/ul>\n<pre class=\"code-snippet__js\" data-lang=\"c\"><code><span class=\"code-snippet_outer\">sizeGrWindow(<span class=\"code-snippet__number\">12<\/span>, <span class=\"code-snippet__number\">9<\/span>)par(cex = <span class=\"code-snippet__number\">0.6<\/span>)par(mar = c(<span class=\"code-snippet__number\">0<\/span>, <span class=\"code-snippet__number\">4<\/span>, <span class=\"code-snippet__number\">2<\/span>, <span class=\"code-snippet__number\">0<\/span>))plot(sampleTree, main = <span class=\"code-snippet__string\">\"Sample clustering to detect outliers\"<\/span>, sub = <span class=\"code-snippet__string\">\"\"<\/span>, xlab = <span class=\"code-snippet__string\">\"\"<\/span>, cex.lab = <span class=\"code-snippet__number\">1.5<\/span>, cex.axis = <span class=\"code-snippet__number\">1.5<\/span>, cex.main = <span class=\"code-snippet__number\">2<\/span>)<\/span><\/code><\/pre>\n<\/section>\n<p style=\"text-indent: 2em;text-wrap: wrap;\" powered-by=\"xiumi.us\">\u5982\u679c\u4f60\u60f3\u4fdd\u5b58\u56fe\u5f62\uff0c\u4f60\u53ef\u4ee5\u53d6\u6d88\u6ce8\u91ca\u4ee5\u4e0b\u4ee3\u7801\uff0c\u5e76\u8bbe\u7f6e\u4fdd\u5b58\u7684\u6587\u4ef6\u8def\u5f84\uff1a<\/p>\n<section class=\"code-snippet__fix code-snippet__js\">\n<ul class=\"code-snippet__line-index code-snippet__js\">\n<li><\/li>\n<\/ul>\n<pre class=\"code-snippet__js\" data-lang=\"c\"><code><span class=\"code-snippet_outer\"><span class=\"code-snippet__meta\"># pdf(file = <span class=\"code-snippet__meta-string\">\"Plots\/sampleClustering.pdf\"<\/span>, width = 12, height = 9)<\/span><\/span><\/code><\/pre>\n<\/section>\n<p style=\"text-indent: 2em;text-wrap: wrap;\" powered-by=\"xiumi.us\">\u6211\u4eec\u4e00\u8d77\u6765\u770b\u4e00\u4e0b\u7ed8\u5236\u7684\u56fe\u7247\u662f\u4ec0\u4e48\u6837\u5427\uff01<\/p>\n<section style=\"text-align: center;margin-top: 10px;margin-bottom: 10px;line-height: 0;\" powered-by=\"xiumi.us\">\n<section style=\"vertical-align: middle;display: inline-block;line-height: 0;\"><img decoding=\"async\" class=\"rich_pages wxw-img\" data-ratio=\"0.7518518518518519\" data-s=\"300,640\" src=\"https:\/\/i0.wp.com\/www.biocloudservice.com\/wordpress\/wp-content\/uploads\/2024\/06\/5_QU2xygpbLbu7trK8AnCCuyM17NE0bA.png?w=640\" onerror=\"this.src='https:\/\/mmbiz.qpic.cn\/sz_mmbiz_png\/oCSOtP61aEWXBvIyDiawbGJO18IPExv3BnsrZKTkOfcNNiaFUnJFaMia2ofQU2xygpbLbu7trK8AnCCuyM17NE0bA\/640?wx_fmt=png'\" data-type=\"png\" data-w=\"1080\" style=\"vertical-align: middle;width: 100%;\" data-recalc-dims=\"1\" \/><\/section>\n<\/section>\n<p style=\"text-indent: 2em;text-wrap: wrap;\" powered-by=\"xiumi.us\">\u63a5\u4e0b\u6765\uff0c\u6211\u4eec\u53ef\u4ee5\u7ed8\u5236\u9608\u503c\u5207\u5272\u7ebf\u5e76\u786e\u5b9a\u5207\u5272\u540e\u7684\u96c6\u7fa4\uff1a<\/p>\n<section class=\"code-snippet__fix code-snippet__js\">\n<ul class=\"code-snippet__line-index code-snippet__js\">\n<li><\/li>\n<\/ul>\n<pre class=\"code-snippet__js\" data-lang=\"c\"><code><span class=\"code-snippet_outer\">abline(h = <span class=\"code-snippet__number\">15<\/span>, col = <span class=\"code-snippet__string\">\"red\"<\/span>)clust = cutreeStatic(sampleTree, cutHeight = <span class=\"code-snippet__number\">15<\/span>, minSize = <span class=\"code-snippet__number\">10<\/span>)table(clust)<\/span><\/code><\/pre>\n<\/section>\n<section powered-by=\"xiumi.us\">\n<p style=\"margin-bottom: 12px;text-wrap: wrap;\"><br \/><\/p>\n<p style=\"text-indent: 2em;margin-bottom: 12px;text-wrap: wrap;\">\u6700\u540e\uff0c\u6211\u4eec\u53ef\u4ee5\u6839\u636e\u5207\u5272\u540e\u7684\u96c6\u7fa4\u9009\u62e9\u4fdd\u7559\u7684\u6837\u672c\uff0c\u5e76\u5c06\u5176\u653e\u5165\u65b0\u7684\u6570\u636e\u77e9\u9635datExpr\u4e2d\uff1a<\/p>\n<p><br \/><\/p>\n<\/section>\n<section class=\"code-snippet__fix code-snippet__js\">\n<ul class=\"code-snippet__line-index code-snippet__js\">\n<li><\/li>\n<\/ul>\n<pre class=\"code-snippet__js\" data-lang=\"c\"><code><span class=\"code-snippet_outer\">keepSamples = (clust == <span class=\"code-snippet__number\">1<\/span>)datExpr = datExpr0[keepSamples, ]<\/span><\/code><\/pre>\n<\/section>\n<section style=\"text-align: left;justify-content: flex-start;display: flex;flex-flow: row;margin-top: 10px;margin-bottom: 10px;\" powered-by=\"xiumi.us\">\n<section style=\"display: inline-block;vertical-align: bottom;width: auto;align-self: flex-end;flex: 0 0 auto;min-width: 5%;height: auto;padding-right: 7px;\"><svg viewbox=\"0 0 1 1\" style=\"float:left;line-height:0;width:0;vertical-align:top;\"><\/svg><\/section>\n<section style=\"display: inline-block;vertical-align: bottom;width: auto;align-self: flex-end;flex: 100 100 0%;height: auto;\">\n<section style=\"height: auto;transform: perspective(0px);transform-style: flat;\" powered-by=\"xiumi.us\">\n<section style=\"justify-content: flex-start;display: flex;flex-flow: row;transform: rotateX(180deg);\">\n<section style=\"display: inline-block;vertical-align: middle;width: auto;align-self: center;flex: 0 0 auto;min-width: 5%;height: auto;\">\n<section style=\"text-align: center;\" powered-by=\"xiumi.us\">\n<section style=\"display: inline-block;width: 10px;height: 10px;vertical-align: top;overflow: hidden;border-radius: 632px;background-color: rgb(221, 240, 245);\">\n<section style=\"text-align: justify;\" powered-by=\"xiumi.us\">\n<p><br \/><\/p>\n<\/section>\n<\/section>\n<\/section>\n<\/section>\n<section style=\"display: inline-block;vertical-align: middle;width: auto;align-self: center;flex: 0 0 auto;min-width: 5%;height: auto;\">\n<section style=\"text-align: center;\" powered-by=\"xiumi.us\">\n<section style=\"display: inline-block;width: 10px;height: 10px;vertical-align: top;overflow: hidden;border-radius: 632px;background-color: rgb(221, 240, 245);\">\n<section style=\"text-align: justify;\" powered-by=\"xiumi.us\">\n<p><br \/><\/p>\n<\/section>\n<\/section>\n<\/section>\n<\/section>\n<section style=\"display: inline-block;vertical-align: middle;width: auto;align-self: center;flex: 0 0 auto;min-width: 5%;height: auto;\">\n<section style=\"text-align: center;\" powered-by=\"xiumi.us\">\n<section style=\"display: inline-block;width: 10px;height: 10px;vertical-align: top;overflow: hidden;border-radius: 632px;background-color: rgb(221, 240, 245);\">\n<section style=\"text-align: justify;\" powered-by=\"xiumi.us\">\n<p><br \/><\/p>\n<\/section>\n<\/section>\n<\/section>\n<\/section>\n<\/section>\n<\/section>\n<\/section>\n<\/section>\n<section style=\"text-align: left;justify-content: flex-start;display: flex;flex-flow: row;margin-top: 10px;margin-bottom: 10px;\" powered-by=\"xiumi.us\">\n<section style=\"display: inline-block;width: 100%;vertical-align: top;align-self: flex-start;flex: 0 0 auto;border-style: solid;border-width: 10px;border-color: rgb(228, 248, 254);padding: 18px;\">\n<section style=\"text-align: justify;\" powered-by=\"xiumi.us\">\n<p style=\"text-indent: 2em;text-wrap: wrap;\">\u8fd9\u5c31\u662f\u4e00\u4e2a\u4f7f\u7528WGCNA\u5305\u5bf9\u57fa\u56e0\u8868\u8fbe\u6570\u636e\u8fdb\u884c\u5206\u6790\u7684\u7b80\u5355\u793a\u4f8b\u3002\u5927\u5bb6\u53ef\u4ee5\u6839\u636e\u81ea\u5df1\u7684\u9700\u6c42\u548c\u6570\u636e\u8fdb\u884c\u76f8\u5e94\u7684\u4fee\u6539\u548c\u6269\u5c55\u54e6\u3002\u5e0c\u671b\u672c\u6559\u7a0b\u80fd\u591f\u5e2e\u52a9\u4f60\u5f00\u59cb\u4f7f\u7528WGCNA\u5305\u8fdb\u884c\u57fa\u56e0\u8868\u8fbe\u6570\u636e\u5206\u6790\uff01\u5feb\u548c\u5c0f\u5e08\u59b9\u4e00\u8d77\u5b66\u8d77\u6765\u5427\uff01<\/p>\n<\/section>\n<\/section>\n<\/section>\n<\/section>\n<p style=\"margin-bottom: 24px;\"><img decoding=\"async\" class=\"rich_pages wxw-img\" data-ratio=\"0.5555555555555556\" data-s=\"300,640\" src=\"https:\/\/i0.wp.com\/www.biocloudservice.com\/wordpress\/wp-content\/uploads\/2024\/06\/6_akXKU5NcO1KwuWc1Rk7ZJ56LC2pYrQ-13.png?w=640\" onerror=\"this.src='https:\/\/mmbiz.qpic.cn\/sz_mmbiz_png\/oCSOtP61aEXjjmsEC5aXz0RE4be2ib1fJPnBD8yX0Z6OF2zocd2ngHpLOakXKU5NcO1KwuWc1Rk7ZJ56LC2pYrQ\/640?wx_fmt=png'\" data-type=\"png\" data-w=\"900\" style=\"\" data-recalc-dims=\"1\" \/><\/p>\n<p style=\"margin-bottom: 24px;\"><img decoding=\"async\" class=\"rich_pages wxw-img\" data-ratio=\"0.3488888888888889\" data-s=\"300,640\" src=\"https:\/\/i0.wp.com\/www.biocloudservice.com\/wordpress\/wp-content\/uploads\/2024\/06\/7_BoDuficWb7YjnP0CXo0mIcibhsXn8w-2.jpg?w=640\" onerror=\"this.src='https:\/\/mmbiz.qpic.cn\/sz_mmbiz_jpg\/oCSOtP61aEUlxqHhbZryhECGXicgBrLn1ZkgkpYia2qsgSgNWPQMp0RiaIAmlBoDuficWb7YjnP0CXo0mIcibhsXn8w\/640?wx_fmt=jpeg'\" data-type=\"jpeg\" data-w=\"900\" style=\"\" data-recalc-dims=\"1\" \/><\/p>\n<p style=\"display: none;margin-bottom: 24px;\"><mp-style-type data-value=\"3\"><\/mp-style-type><\/p>\n<div class=\"msg_source_url\"><a href=\"https:\/\/v.xiumi.us\/board\/v5\/6rNpH\/474883574\" target=\"_blank\" rel=\"noopener\">\u9605\u8bfb\u539f\u6587<\/a><\/div>\n<p><\/content><\/p>\n<div class=\"msg_source_url\"><a href=\"https:\/\/v.xiumi.us\/board\/v5\/6rNpH\/474883574\" target=\"_blank\" rel=\"noopener\">\u9605\u8bfb\u539f\u6587<\/a><\/div>\n<\/div>\n<p><\/body><br \/>\n<\/html><\/p>\n","protected":false},"excerpt":{"rendered":"<p>\u57fa\u56e0\u63a2\u9669\uff1a\u7528WGCNA\u89e3\u5bc6\u57fa\u56e0\u8868\u8fbe\u4e4b\u8c1c \u5c0f\u5e08\u59b9 \u751f\u4fe1\u679c 2023- […]<\/p>\n","protected":false},"author":1,"featured_media":0,"comment_status":"closed","ping_status":"","sticky":false,"template":"","format":"standard","meta":{"jetpack_post_was_ever_published":false,"_jetpack_newsletter_access":""},"categories":[1],"tags":[],"jetpack_featured_media_url":"","_links":{"self":[{"href":"http:\/\/www.biocloudservice.com\/wordpress\/index.php?rest_route=\/wp\/v2\/posts\/59509"}],"collection":[{"href":"http:\/\/www.biocloudservice.com\/wordpress\/index.php?rest_route=\/wp\/v2\/posts"}],"about":[{"href":"http:\/\/www.biocloudservice.com\/wordpress\/index.php?rest_route=\/wp\/v2\/types\/post"}],"author":[{"embeddable":true,"href":"http:\/\/www.biocloudservice.com\/wordpress\/index.php?rest_route=\/wp\/v2\/users\/1"}],"replies":[{"embeddable":true,"href":"http:\/\/www.biocloudservice.com\/wordpress\/index.php?rest_route=%2Fwp%2Fv2%2Fcomments&post=59509"}],"version-history":[{"count":1,"href":"http:\/\/www.biocloudservice.com\/wordpress\/index.php?rest_route=\/wp\/v2\/posts\/59509\/revisions"}],"predecessor-version":[{"id":59517,"href":"http:\/\/www.biocloudservice.com\/wordpress\/index.php?rest_route=\/wp\/v2\/posts\/59509\/revisions\/59517"}],"wp:attachment":[{"href":"http:\/\/www.biocloudservice.com\/wordpress\/index.php?rest_route=%2Fwp%2Fv2%2Fmedia&parent=59509"}],"wp:term":[{"taxonomy":"category","embeddable":true,"href":"http:\/\/www.biocloudservice.com\/wordpress\/index.php?rest_route=%2Fwp%2Fv2%2Fcategories&post=59509"},{"taxonomy":"post_tag","embeddable":true,"href":"http:\/\/www.biocloudservice.com\/wordpress\/index.php?rest_route=%2Fwp%2Fv2%2Ftags&post=59509"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}