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normal;\">\u4eca\u5929\u5c0f\u56fe\u4e3a\u5927\u5bb6\u5e26\u6765\u7684\u5206\u4eab\u7070\u5e38\u7070\u5e38\u6709\u7528\uff0c\u5bf9\u4e8e\u5f88\u591a\u5c0f\u4f19\u4f34\u6765\u8bf4\uff0c\u514d\u75ab\u6d78\u6da6\u5206\u6790\u662f\u975e\u5e38\u719f\u6089\u7684\u5206\u6790\uff0c\u8be5\u5206\u6790\u5728\u751f\u4fe1\u6587\u7ae0\u4e2d\u51fa\u73b0\u7684\u9891\u7387\u5f88\u9ad8\uff0c\u4eca\u5929\u5c0f\u56fe\u60f3\u5229\u7528pheatmap\u5305\u5bf9\u591a\u79cd\u514d\u75ab\u6d78\u6da6\u7b97\u6cd5\u7ed3\u679c\u8fdb\u884c\u5c55\u793a\uff0c\u975e\u5e38\u503c\u5f97\u5c0f\u767d\u5b66\u4e60\uff0c\u6709\u9700\u8981\u7684\u5c0f\u4f19\u4f34\u53ef\u4ee5\u8ddf\u7740\u5c0f\u56fe\u5f00\u59cb\u4eca\u5929\u7684\u5b66\u4e60\uff0c\u8bdd\u4e0d\u591a\u8bf4\u5f00\u59cb\u4eca\u5929\u7684\u5206\u4eab\u3002<\/p>\n<\/section>\n<p style=\"white-space: normal;\" powered-by=\"xiumi.us\"><br \/><\/p>\n<section style=\"display: flex;flex-flow: row;text-align: center;justify-content: center;margin-top: 10px;margin-bottom: 20px;\" powered-by=\"xiumi.us\">\n<section style=\"display: inline-block;vertical-align: top;width: auto;flex: 0 0 0%;align-self: stretch;height: auto;background-position: 0% 0%;background-repeat: repeat-y;background-size: 100%;background-attachment: scroll;background-image: url("https:\/\/mmbiz.qpic.cn\/sz_mmbiz_png\/2wJ7bWfS0QsE0WHvkWry2FKeMAYHpVCt8brBFuQJOwA66yBoR4MuicGc5JfuzSNKnk5A4XpDDRDY6Fdc1IfI0uw\/640?wx_fmt=png");\">\n<section style=\"\" powered-by=\"xiumi.us\">\n<section style=\"display: inline-block;width: 5px;height: 10px;vertical-align: top;overflow: hidden;\"><svg viewbox=\"0 0 1 1\" style=\"float:left;line-height:0;width:0;vertical-align:top;\"><\/svg><\/section>\n<\/section>\n<\/section>\n<section style=\"display: inline-block;vertical-align: top;width: auto;flex: 0 0 auto;align-self: stretch;min-width: 10%;height: auto;background-color: rgb(254, 227, 229);box-shadow: rgb(0, 0, 0) 0px 0px 0px;\">\n<section style=\"margin-right: 0%;margin-left: 0%;\" powered-by=\"xiumi.us\">\n<section style=\"color: rgb(84, 54, 54);padding-right: 10px;padding-left: 10px;text-align: justify;font-size: 17px;letter-spacing: 3px;\">\n<p style=\"white-space: normal;\"><strong>1\u3001\u51c6\u5907\u9700\u8981\u7684R\u5305<\/strong><\/p>\n<\/section>\n<\/section>\n<\/section>\n<section style=\"display: inline-block;vertical-align: top;width: auto;flex: 0 0 0%;align-self: stretch;height: auto;background-position: 0% 0%;background-repeat: repeat-y;background-size: 100%;background-attachment: scroll;background-image: url("https:\/\/mmbiz.qpic.cn\/sz_mmbiz_png\/2wJ7bWfS0QsE0WHvkWry2FKeMAYHpVCteKUSlkfZIziayljcNMICo3dSZwG48HuytqPVW4Ks40ibhMuicbHgk88Gg\/640?wx_fmt=png");\">\n<section style=\"\" powered-by=\"xiumi.us\">\n<section style=\"display: inline-block;width: 5px;height: 10px;vertical-align: top;overflow: hidden;\"><svg viewbox=\"0 0 1 1\" style=\"float:left;line-height:0;width:0;vertical-align:top;\"><\/svg><\/section>\n<\/section>\n<\/section>\n<\/section>\n<section class=\"code-snippet__fix code-snippet__js\">\n<ul class=\"code-snippet__line-index code-snippet__js\">\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<\/ul>\n<pre class=\"code-snippet__js\" data-lang=\"c\"><code><span class=\"code-snippet_outer\">#\u5b89\u88c5\u9700\u8981\u7684R\u5305<\/span><\/code><code><span class=\"code-snippet_outer\">BiocManager::install(<span class=\"code-snippet__string\">\"pheatmap\"<\/span>)<\/span><\/code><code><span class=\"code-snippet_outer\">install.packages(\u201ctidyverse\u201d)<\/span><\/code><code><span class=\"code-snippet_outer\">install.packages(<span class=\"code-snippet__string\">\"RColorBrewer\"<\/span>)<\/span><\/code><code><span class=\"code-snippet_outer\">install.packages(<span class=\"code-snippet__string\">\"gplots\"<\/span>)<\/span><\/code><code><span class=\"code-snippet_outer\">#\u52a0\u8f7d\u9700\u8981\u7684R\u5305<\/span><\/code><code><span class=\"code-snippet_outer\">library(pheatmap)<\/span><\/code><code><span class=\"code-snippet_outer\">library(RColorBrewer)<\/span><\/code><code><span class=\"code-snippet_outer\">library(immunedeconv)<\/span><\/code><code><span class=\"code-snippet_outer\">library(tidyverse)<\/span><\/code><code><span class=\"code-snippet_outer\">library(gplots)<\/span><\/code><\/pre>\n<\/section>\n<p style=\"white-space: normal;\" powered-by=\"xiumi.us\"><br \/><\/p>\n<section style=\"display: flex;flex-flow: row;text-align: center;justify-content: center;margin-top: 10px;margin-bottom: 20px;\" powered-by=\"xiumi.us\">\n<section style=\"display: inline-block;vertical-align: top;width: auto;flex: 0 0 0%;align-self: stretch;height: auto;background-position: 0% 0%;background-repeat: repeat-y;background-size: 100%;background-attachment: scroll;background-image: url("https:\/\/mmbiz.qpic.cn\/sz_mmbiz_png\/2wJ7bWfS0QsE0WHvkWry2FKeMAYHpVCt8brBFuQJOwA66yBoR4MuicGc5JfuzSNKnk5A4XpDDRDY6Fdc1IfI0uw\/640?wx_fmt=png");\">\n<section style=\"\" powered-by=\"xiumi.us\">\n<section style=\"display: inline-block;width: 5px;height: 10px;vertical-align: top;overflow: hidden;\"><svg viewbox=\"0 0 1 1\" style=\"float:left;line-height:0;width:0;vertical-align:top;\"><\/svg><\/section>\n<\/section>\n<\/section>\n<section style=\"display: inline-block;vertical-align: top;width: auto;flex: 0 0 auto;align-self: stretch;min-width: 10%;height: auto;background-color: rgb(254, 227, 229);box-shadow: rgb(0, 0, 0) 0px 0px 0px;\">\n<section style=\"margin-right: 0%;margin-left: 0%;\" powered-by=\"xiumi.us\">\n<section style=\"color: rgb(84, 54, 54);padding-right: 10px;padding-left: 10px;text-align: justify;font-size: 17px;letter-spacing: 3px;\">\n<p style=\"white-space: normal;\"><strong>2\u3001\u8bfb\u53d6\u8f93\u5165\u6570\u636e<\/strong><\/p>\n<\/section>\n<\/section>\n<\/section>\n<section style=\"display: inline-block;vertical-align: top;width: auto;flex: 0 0 0%;align-self: stretch;height: auto;background-position: 0% 0%;background-repeat: repeat-y;background-size: 100%;background-attachment: scroll;background-image: url("https:\/\/mmbiz.qpic.cn\/sz_mmbiz_png\/2wJ7bWfS0QsE0WHvkWry2FKeMAYHpVCteKUSlkfZIziayljcNMICo3dSZwG48HuytqPVW4Ks40ibhMuicbHgk88Gg\/640?wx_fmt=png");\">\n<section style=\"\" powered-by=\"xiumi.us\">\n<section style=\"display: inline-block;width: 5px;height: 10px;vertical-align: top;overflow: hidden;\"><svg viewbox=\"0 0 1 1\" style=\"float:left;line-height:0;width:0;vertical-align:top;\"><\/svg><\/section>\n<\/section>\n<\/section>\n<\/section>\n<section class=\"code-snippet__fix code-snippet__js\">\n<ul class=\"code-snippet__line-index code-snippet__js\">\n<li><\/li>\n<li><\/li>\n<\/ul>\n<pre class=\"code-snippet__js\" data-lang=\"c\"><code><span class=\"code-snippet_outer\">#EXP.txt\u57fa\u56e0\u8868\u8fbe\u77e9\u9635\uff0c\u884c\u540d\u4e3a\u57fa\u56e0\u540d\uff0c\u5217\u540d\u4e3a\u6837\u672c\u540d<\/span><\/code><code><span class=\"code-snippet_outer\">dat <- read.table(<span class=\"code-snippet__string\">\"EXP.txt\"<\/span>,sep = <span class=\"code-snippet__string\">\"t\"<\/span>,row.names = <span class=\"code-snippet__number\">1<\/span>,header = T,stringsAsFactors = F,check.names = F)<\/span><\/code><\/pre>\n<\/section>\n<section style=\"text-align: center;margin-top: 10px;margin-bottom: 10px;line-height: 0;\" powered-by=\"xiumi.us\">\n<section style=\"vertical-align: middle;display: inline-block;line-height: 0;\"><img decoding=\"async\" class=\"rich_pages wxw-img\" data-ratio=\"0.287962962962963\" data-s=\"300,640\" data-type=\"jpeg\" data-w=\"1080\" style=\"vertical-align: middle;width: 100%;height: auto !important;\" src=\"https:\/\/i0.wp.com\/www.biocloudservice.com\/wordpress\/wp-content\/uploads\/2024\/06\/1_8aLhl6vJFdmZYPTP00wqqDSnRyXL1Q.jpg?w=640\" onerror=\"this.src='https:\/\/mmbiz.qpic.cn\/sz_mmbiz_jpg\/2wJ7bWfS0QsE0WHvkWry2FKeMAYHpVCtOwiccFicBQXCwKNUs2ibs9brF8G8aLhl6vJFdmZYPTP00wqqDSnRyXL1Q\/640?wx_fmt=jpeg'\" data-recalc-dims=\"1\" \/><\/section>\n<\/section>\n<p style=\"white-space: normal;\" powered-by=\"xiumi.us\"><br \/><\/p>\n<section class=\"code-snippet__fix code-snippet__js\">\n<ul class=\"code-snippet__line-index code-snippet__js\">\n<li><\/li>\n<li><\/li>\n<\/ul>\n<pre class=\"code-snippet__js\" data-lang=\"c\"><code><span class=\"code-snippet_outer\"><span class=\"code-snippet__meta\">#group.txt\uff0c\u98ce\u9669\u8bc4\u5206\u9ad8\u4f4e\u5206\u7ec4\u6837\u672c\u4fe1\u606f\u6587\u4ef6,\u7b2c\u4e00\u5217\u4e3a\u6837\u672c\u540d\uff0c\u7b2c\u4e8c\u5217\u4e3a\u9ad8\u4f4e\u5206\u7ec4\u4fe1\u606f<\/span><\/span><\/code><code><span class=\"code-snippet_outer\">ann <- read.table(<span class=\"code-snippet__string\">\"group.txt\"<\/span>,sep = <span class=\"code-snippet__string\">\"t\"<\/span>,header = T,stringsAsFactors = F,check.names = F)<\/span><\/code><\/pre>\n<\/section>\n<section style=\"text-align: center;margin-top: 10px;margin-bottom: 10px;line-height: 0;\" powered-by=\"xiumi.us\">\n<section style=\"vertical-align: middle;display: inline-block;line-height: 0;\"><img decoding=\"async\" class=\"rich_pages wxw-img\" data-ratio=\"0.29907407407407405\" data-s=\"300,640\" data-type=\"jpeg\" data-w=\"1080\" style=\"vertical-align: middle;width: 100%;height: auto !important;\" src=\"https:\/\/i0.wp.com\/www.biocloudservice.com\/wordpress\/wp-content\/uploads\/2024\/06\/2_x8gKKP6MtJz2IgDDKFPGt91HzW9gjg.jpg?w=640\" onerror=\"this.src='https:\/\/mmbiz.qpic.cn\/sz_mmbiz_jpg\/2wJ7bWfS0QsE0WHvkWry2FKeMAYHpVCtmor0kX1rcKTHYL2VYdQRBysNx8gKKP6MtJz2IgDDKFPGt91HzW9gjg\/640?wx_fmt=jpeg'\" data-recalc-dims=\"1\" \/><\/section>\n<\/section>\n<p style=\"white-space: normal;\" powered-by=\"xiumi.us\"><br \/><\/p>\n<section class=\"code-snippet__fix code-snippet__js\">\n<ul class=\"code-snippet__line-index code-snippet__js\">\n<li><\/li>\n<li><\/li>\n<\/ul>\n<pre class=\"code-snippet__js\" data-lang=\"c\"><code><span class=\"code-snippet_outer\">#\u5229\u7528xcell\u7b97\u6cd5\u8fdb\u884c\u514d\u75ab\u6d78\u6da6\u5206\u6790<\/span><\/code><code><span class=\"code-snippet_outer\">xcell<-immunedeconv::deconvolute(dat, <span class=\"code-snippet__string\">\"xcell\"<\/span>)<\/span><\/code><\/pre>\n<\/section>\n<section style=\"text-align: center;margin-top: 10px;margin-bottom: 10px;line-height: 0;\" powered-by=\"xiumi.us\">\n<section style=\"vertical-align: middle;display: inline-block;line-height: 0;\"><img decoding=\"async\" class=\"rich_pages wxw-img\" data-ratio=\"0.2796296296296296\" data-s=\"300,640\" data-type=\"jpeg\" data-w=\"1080\" style=\"vertical-align: middle;width: 100%;height: auto !important;\" src=\"https:\/\/i0.wp.com\/www.biocloudservice.com\/wordpress\/wp-content\/uploads\/2024\/06\/3_qRj6Ow8lgTzthp5MbtIgOkx1Aiaclg.jpg?w=640\" onerror=\"this.src='https:\/\/mmbiz.qpic.cn\/sz_mmbiz_jpg\/2wJ7bWfS0QsE0WHvkWry2FKeMAYHpVCt3p26XqSu9Ww27Xu4Km5Vl7BuTqRj6Ow8lgTzthp5MbtIgOkx1Aiaclg\/640?wx_fmt=jpeg'\" data-recalc-dims=\"1\" \/><\/section>\n<\/section>\n<p style=\"white-space: normal;\" powered-by=\"xiumi.us\"><br \/><\/p>\n<section class=\"code-snippet__fix code-snippet__js\">\n<ul class=\"code-snippet__line-index code-snippet__js\">\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<\/ul>\n<pre class=\"code-snippet__js\" data-lang=\"c\"><code><span class=\"code-snippet_outer\">#\u5c06\u6570\u636e\u7c7b\u578b\u8f6c\u5316\u4e3a\u6570\u636e\u6846<\/span><\/code><code><span class=\"code-snippet_outer\">xcell<-as.data.frame(xcell)<\/span><\/code><code><span class=\"code-snippet_outer\">#\u6dfb\u52a0\u514d\u75ab\u6d78\u6da6\u7b97\u6cd5\u540d\u79f0<\/span><\/code><code><span class=\"code-snippet_outer\">xcell$cell_type<-paste0(xcell$cell_type,<span class=\"code-snippet__string\">\"_XCELL\"<\/span>)<\/span><\/code><code><span class=\"code-snippet_outer\">#\u6dfb\u52a0\u65b0\u7684\u5217\u540d<\/span><\/code><code><span class=\"code-snippet_outer\">xcell$Immunemethod<-<span class=\"code-snippet__string\">\"XCELL\"<\/span><\/span><\/code><code><span class=\"code-snippet_outer\">#\u5229\u7528epic\u7b97\u6cd5\u8fdb\u884c\u514d\u75ab\u6d78\u6da6\u5206\u6790<\/span><\/code><code><span class=\"code-snippet_outer\">epic<-immunedeconv::deconvolute(dat, <span class=\"code-snippet__string\">\"epic\"<\/span>)<\/span><\/code><\/pre>\n<\/section>\n<section style=\"text-align: center;margin-top: 10px;margin-bottom: 10px;line-height: 0;\" powered-by=\"xiumi.us\">\n<section style=\"vertical-align: middle;display: inline-block;line-height: 0;\"><img decoding=\"async\" data-ratio=\"0.2462962962962963\" data-s=\"300,640\" data-type=\"jpeg\" data-w=\"1080\" style=\"vertical-align: middle;width: 100%;height: auto !important;\" src=\"https:\/\/i0.wp.com\/www.biocloudservice.com\/wordpress\/wp-content\/uploads\/2024\/06\/4_90DKibfBoic8HWibg6as0RzSJ2VRQQ.jpg?w=640\" onerror=\"this.src='https:\/\/mmbiz.qpic.cn\/sz_mmbiz_jpg\/2wJ7bWfS0QsE0WHvkWry2FKeMAYHpVCtx1ozrFKVXiaXqV3P5MMEHwkHyOX990DKibfBoic8HWibg6as0RzSJ2VRQQ\/640?wx_fmt=jpeg'\" data-recalc-dims=\"1\" \/><\/section>\n<\/section>\n<p style=\"white-space: normal;\" powered-by=\"xiumi.us\"><br \/><\/p>\n<section class=\"code-snippet__fix code-snippet__js\">\n<ul class=\"code-snippet__line-index code-snippet__js\">\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<\/ul>\n<pre class=\"code-snippet__js\" data-lang=\"c\"><code><span class=\"code-snippet_outer\">#\u5c06\u6570\u636e\u7c7b\u578b\u8f6c\u5316\u4e3a\u6570\u636e\u6846<\/span><\/code><code><span class=\"code-snippet_outer\">epic<-as.data.frame(epic)<\/span><\/code><code><span class=\"code-snippet_outer\">#\u6dfb\u52a0\u514d\u75ab\u6d78\u6da6\u7b97\u6cd5\u540d\u79f0<\/span><\/code><code><span class=\"code-snippet_outer\">epic$cell_type<-paste0(epic$cell_type,<span class=\"code-snippet__string\">\"_EPIC\"<\/span>)<\/span><\/code><code><span class=\"code-snippet_outer\">#\u6dfb\u52a0\u65b0\u7684\u5217\u540d<\/span><\/code><code><span class=\"code-snippet_outer\">epic$Immunemethod<-<span class=\"code-snippet__string\">\"EPIC\"<\/span><\/span><\/code><code><span class=\"code-snippet_outer\">#\u5229\u7528mcp_counter\u7b97\u6cd5\u8fdb\u884c\u514d\u75ab\u6d78\u6da6\u5206\u6790<\/span><\/code><code><span class=\"code-snippet_outer\">mcp_counter<-immunedeconv::deconvolute(dat,<span class=\"code-snippet__string\">\"mcp_counter\"<\/span>)<\/span><\/code><\/pre>\n<\/section>\n<section style=\"text-align: center;margin-top: 10px;margin-bottom: 10px;line-height: 0;\" powered-by=\"xiumi.us\">\n<section style=\"vertical-align: middle;display: inline-block;line-height: 0;\"><img decoding=\"async\" class=\"rich_pages wxw-img\" data-ratio=\"0.28703703703703703\" data-s=\"300,640\" data-type=\"jpeg\" data-w=\"1080\" style=\"vertical-align: middle;width: 100%;height: auto !important;\" src=\"https:\/\/i0.wp.com\/www.biocloudservice.com\/wordpress\/wp-content\/uploads\/2024\/06\/5_2tUCtZl2qcdR0Osy554NQLEx84V6WA.jpg?w=640\" onerror=\"this.src='https:\/\/mmbiz.qpic.cn\/sz_mmbiz_jpg\/2wJ7bWfS0QsE0WHvkWry2FKeMAYHpVCt9z1FMuoqazZPJ9JLZ2ASAXaZ2tUCtZl2qcdR0Osy554NQLEx84V6WA\/640?wx_fmt=jpeg'\" data-recalc-dims=\"1\" \/><\/section>\n<\/section>\n<p style=\"white-space: normal;\" powered-by=\"xiumi.us\"><br \/><\/p>\n<section class=\"code-snippet__fix code-snippet__js\">\n<ul class=\"code-snippet__line-index code-snippet__js\">\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<\/ul>\n<pre class=\"code-snippet__js\" data-lang=\"c\"><code><span class=\"code-snippet_outer\">#\u5c06\u6570\u636e\u7c7b\u578b\u8f6c\u5316\u4e3a\u6570\u636e\u6846<\/span><\/code><code><span class=\"code-snippet_outer\">mcp_counter<-as.data.frame(mcp_counter)<\/span><\/code><code><span class=\"code-snippet_outer\">#\u6dfb\u52a0\u514d\u75ab\u6d78\u6da6\u7b97\u6cd5\u540d\u79f0<\/span><\/code><code><span class=\"code-snippet_outer\">mcp_counter$cell_type<-paste0(mcp_counter$cell_type,<span class=\"code-snippet__string\">\"_MCPCOUNTER\"<\/span>)<\/span><\/code><code><span class=\"code-snippet_outer\">##\u6dfb\u52a0\u65b0\u7684\u5217\u540d<\/span><\/code><code><span class=\"code-snippet_outer\">mcp_counter$Immunemethod<-<span class=\"code-snippet__string\">\"MCPCOUNTER\"<\/span><\/span><\/code><code><span class=\"code-snippet_outer\">#\u5408\u5e76xcell,epic\u548cmcp_counter\u4e09\u79cd\u7b97\u6cd5\u514d\u75ab\u7ec6\u80de\u77e9\u9635<\/span><\/code><code><span class=\"code-snippet_outer\">Immune<-rbind(xcell,epic,mcp_counter)<\/span><\/code><code><span class=\"code-snippet_outer\">#\u63d0\u53d6\u514d\u75ab\u7ec6\u80de\u77e9\u9635<\/span><\/code><code><span class=\"code-snippet_outer\"><span class=\"code-snippet__keyword\">final<\/span><-select(Immune,-Immunemethod)<\/span><\/code><code><span class=\"code-snippet_outer\">#\u628a\u5217\u540d\u6539\u6210\u884c\u540d<\/span><\/code><code><span class=\"code-snippet_outer\"><span class=\"code-snippet__keyword\">final<\/span><-column_to_rownames(<span class=\"code-snippet__keyword\">final<\/span>,var=<span class=\"code-snippet__string\">\"cell_type\"<\/span>)<\/span><\/code><code><span class=\"code-snippet_outer\">#\u5339\u914d\u9ad8\u4f4e\u98ce\u9669\u7ec4\u6837\u672c\u4fe1\u606f<\/span><\/code><code><span class=\"code-snippet_outer\">Immunesample<-match(ann$sample,colnames(<span class=\"code-snippet__keyword\">final<\/span>))<\/span><\/code><code><span class=\"code-snippet_outer\"><span class=\"code-snippet__keyword\">final<\/span><-<span class=\"code-snippet__keyword\">final<\/span>[,Immunesample]<\/span><\/code><code><span class=\"code-snippet_outer\"># \u5b9a\u4e49\u989c\u8272<\/span><\/code><code><span class=\"code-snippet_outer\"><span class=\"code-snippet__number\">3.<\/span>\u7ed8\u5236\u514d\u75ab\u7ec6\u80de\u70ed\u56fe<\/span><\/code><code><span class=\"code-snippet_outer\">methods.col <- brewer.pal(n = length(unique(Immune$immMethod)),name = <span class=\"code-snippet__string\">\"Paired\"<\/span>)<\/span><\/code><code><span class=\"code-snippet_outer\"># \u521b\u5efa\u6ce8\u91ca<\/span><\/code><code><span class=\"code-snippet_outer\"># \u5217\u6ce8\u91ca\uff0c\u4f4d\u4e8e\u70ed\u56fe\u9876\u7aef<\/span><\/code><code><span class=\"code-snippet_outer\">annCol <- data.frame(RiskType = ann$group,<\/span><\/code><code><span class=\"code-snippet_outer\"> # \u4ee5\u4e0a\u662frisk score\u548crisk type\u4e24\u79cd\u6ce8\u91ca\uff0c\u53ef\u4ee5\u6309\u7167\u8fd9\u6837\u7684\u683c\u5f0f\u7ee7\u7eed\u6dfb\u52a0\u66f4\u591a\u79cd\u7c7b\u7684\u6ce8\u91ca\u4fe1\u606f\uff0c\u8bb0\u5f97\u5728\u4e0b\u9762\u7684annColors\u91cc\u8bbe\u7f6e\u989c\u8272<\/span><\/code><code><span class=\"code-snippet_outer\"> row.names = ann$sample,<\/span><\/code><code><span class=\"code-snippet_outer\"> stringsAsFactors = F)<\/span><\/code><code><span class=\"code-snippet_outer\"><br \/><\/span><\/code><code><span class=\"code-snippet_outer\"># \u884c\u6ce8\u91ca\uff0c\u4f4d\u4e8e\u70ed\u56fe\u5de6\u4fa7<\/span><\/code><code><span class=\"code-snippet_outer\">annRow<-data.frame(Methods=factor(Immune$Immunemethod,levels=unique(Immune$Immunemethod)),<\/span><\/code><code><span class=\"code-snippet_outer\">row.names = Immune$cell_type,<\/span><\/code><code><span class=\"code-snippet_outer\"> stringsAsFactors = F)<\/span><\/code><code><span class=\"code-snippet_outer\"><br \/><\/span><\/code><code><span class=\"code-snippet_outer\"># \u4e3a\u5404\u6ce8\u91ca\u4fe1\u606f\u8bbe\u7f6e\u989c\u8272<\/span><\/code><code><span class=\"code-snippet_outer\">annColors <- <span class=\"code-snippet__built_in\">list<\/span>(Methods = c(<span class=\"code-snippet__string\">\"XCELL\"<\/span> = methods.col[<span class=\"code-snippet__number\">1<\/span>],<\/span><\/code><code><span class=\"code-snippet_outer\"> <span class=\"code-snippet__string\">\"EPIC\"<\/span> = methods.col[<span class=\"code-snippet__number\">2<\/span>],<\/span><\/code><code><span class=\"code-snippet_outer\"> <span class=\"code-snippet__string\">\"MCPCOUNTER\"<\/span> = methods.col[<span class=\"code-snippet__number\">3<\/span>]),<\/span><\/code><code><span class=\"code-snippet_outer\"> # \u4e0b\u9762\u662f\u5217\u6ce8\u91ca\u7684\u989c\u8272\uff0c\u53ef\u4f9d\u6b64\u8bbe\u7f6e\u66f4\u591a\u6ce8\u91ca\u7684\u989c\u8272<\/span><\/code><code><span class=\"code-snippet_outer\"> <span class=\"code-snippet__string\">\"RiskType\"<\/span> = c(<span class=\"code-snippet__string\">\"High\"<\/span> = <span class=\"code-snippet__string\">\"red\"<\/span>,<span class=\"code-snippet__string\">\"Low\"<\/span> = <span class=\"code-snippet__string\">\"blue\"<\/span>))<\/span><\/code><code><span class=\"code-snippet_outer\"><br \/><\/span><\/code><code><span class=\"code-snippet_outer\"># \u6570\u636e\u6807\u51c6\u5316<\/span><\/code><code><span class=\"code-snippet_outer\">indata <- <span class=\"code-snippet__keyword\">final<\/span>[,colSums(<span class=\"code-snippet__keyword\">final<\/span>) > <span class=\"code-snippet__number\">0<\/span>] # \u786e\u4fdd\u6ca1\u6709\u5bcc\u96c6\u5168\u4e3a<span class=\"code-snippet__number\">0<\/span>\u7684\u7ec6\u80de<\/span><\/code><code><span class=\"code-snippet_outer\">#\u786e\u5b9a\u514d\u75ab\u7ec6\u80de\u542b\u91cf\u8303\u56f4<\/span><\/code><code><span class=\"code-snippet_outer\">standarize.fun <- function(indata=<span class=\"code-snippet__literal\">NULL<\/span>, halfwidth=<span class=\"code-snippet__literal\">NULL<\/span>, centerFlag=T, scaleFlag=T) { <\/span><\/code><code><span class=\"code-snippet_outer\"> outdata=t(scale(t(indata), center=centerFlag, scale=scaleFlag))<\/span><\/code><code><span class=\"code-snippet_outer\"> <span class=\"code-snippet__keyword\">if<\/span> (!is.null(halfwidth)) {<\/span><\/code><code><span class=\"code-snippet_outer\"> outdata[outdata>halfwidth]=halfwidth<\/span><\/code><code><span class=\"code-snippet_outer\"> outdata[outdata<(-halfwidth)]= -halfwidth<\/span><\/code><code><span class=\"code-snippet_outer\"> }<\/span><\/code><code><span class=\"code-snippet_outer\"> <span class=\"code-snippet__keyword\">return<\/span>(outdata)<\/span><\/code><code><span class=\"code-snippet_outer\">}<\/span><\/code><code><span class=\"code-snippet_outer\">plotdata <- standarize.fun(indata,halfwidth = <span class=\"code-snippet__number\">2<\/span>)<\/span><\/code><code><span class=\"code-snippet_outer\"><span class=\"code-snippet__meta\"># pheatmap\u7ed8\u56fe<\/span><\/span><\/code><code><span class=\"code-snippet_outer\">pheatmap::pheatmap(mat = as.matrix(plotdata), # \u6807\u51c6\u5316\u540e\u7684\u6570\u503c\u77e9\u9635<\/span><\/code><code><span class=\"code-snippet_outer\"> border_color = NA, # \u65e0\u8fb9\u6846\u8272<\/span><\/code><code><span class=\"code-snippet_outer\"> color = bluered(<span class=\"code-snippet__number\">64<\/span>), # \u70ed\u56fe\u989c\u8272\u4e3a\u7ea2\u84dd<\/span><\/code><code><span class=\"code-snippet_outer\"> cluster_rows = F, # \u884c\u4e0d\u805a\u7c7b<\/span><\/code><code><span class=\"code-snippet_outer\"> cluster_cols = F, # \u5217\u4e0d\u805a\u7c7b<\/span><\/code><code><span class=\"code-snippet_outer\"> show_rownames = T, # \u663e\u793a\u884c\u540d<\/span><\/code><code><span class=\"code-snippet_outer\"> show_colnames = F, # \u4e0d\u663e\u793a\u5217\u540d<\/span><\/code><code><span class=\"code-snippet_outer\"> annotation_col = annCol, # \u5217\u6ce8\u91ca<\/span><\/code><code><span class=\"code-snippet_outer\"> annotation_row = annRow, # \u884c\u6ce8\u91ca<\/span><\/code><code><span class=\"code-snippet_outer\"> annotation_colors = annColors, # \u6ce8\u91ca\u989c\u8272<\/span><\/code><code><span class=\"code-snippet_outer\"> gaps_col = table(annCol$RiskType)[<span class=\"code-snippet__number\">2<\/span>], # \u5217\u5206\u5272<\/span><\/code><code><span class=\"code-snippet_outer\"> gaps_row = cumsum(table(annRow$Methods)), # \u884c\u5206\u5272<\/span><\/code><code><span class=\"code-snippet_outer\"> cellwidth = <span class=\"code-snippet__number\">0.8<\/span>, # \u5143\u7d20\u5bbd\u5ea6<\/span><\/code><code><span class=\"code-snippet_outer\"> cellheight = <span class=\"code-snippet__number\">10<\/span>, # \u5143\u7d20\u9ad8\u5ea6<\/span><\/code><code><span class=\"code-snippet_outer\"> filename = <span class=\"code-snippet__string\">\"immune_heatmap_by_pheatmap.pdf\"<\/span>)#\u4fdd\u5b58\u56fe\u7247<\/span><\/code><\/pre>\n<\/section>\n<section style=\"text-align: center;margin-top: 10px;margin-bottom: 10px;line-height: 0;\" powered-by=\"xiumi.us\">\n<section style=\"vertical-align: middle;display: inline-block;line-height: 0;\"><img decoding=\"async\" class=\"rich_pages wxw-img\" data-ratio=\"1.3875\" data-s=\"300,640\" data-type=\"jpeg\" data-w=\"480\" style=\"vertical-align: middle;width: 100%;height: auto !important;\" src=\"https:\/\/i0.wp.com\/www.biocloudservice.com\/wordpress\/wp-content\/uploads\/2024\/06\/6_uQaibQaw52uBm83KFWGa6DhxeAbMBQ.jpg?w=640\" onerror=\"this.src='https:\/\/mmbiz.qpic.cn\/sz_mmbiz_jpg\/2wJ7bWfS0QsE0WHvkWry2FKeMAYHpVCtBTEABUtKSzlvRuVCjQEX1O5iaxuQaibQaw52uBm83KFWGa6DhxeAbMBQ\/640?wx_fmt=jpeg'\" data-recalc-dims=\"1\" \/><\/section>\n<\/section>\n<section style=\"font-size: 15px;line-height: 1.8;letter-spacing: 1.5px;\" powered-by=\"xiumi.us\">\n<p 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data-linktype=\"2\" rel=\"noopener\">\u4e0d\u7528\u82b1\u94b1\u5c31\u80fd\u5b66\u5230\u7684GWAS\u6570\u636e\u901a\u8def\u5206\u6790-MAGMA \u53c8\u8d5a\u5230\u4e86\uff01<\/a><\/p>\n<\/section>\n<\/section>\n<\/section>\n<\/td>\n<\/tr>\n<tr opera-tn-ra-comp=\"_$.pages:0.layers:0.comps:27.classicTable1:3\" powered-by=\"xiumi.us\">\n<td colspan=\"1\" rowspan=\"1\" opera-tn-ra-cell=\"_$.pages:0.layers:0.comps:27.classicTable1:3.td@@0\" style=\"border-top: 0px none rgb(62, 62, 62);border-right: 0px none rgb(62, 62, 62);border-left: 0px none rgb(62, 62, 62);border-bottom-color: rgb(202, 198, 198);border-bottom-style: dashed;background-color: rgb(247, 247, 247);padding-right: 5px;padding-left: 5px;\" width=\"96.3700%\">\n<section style=\"text-align: center;justify-content: center;display: flex;flex-flow: row;\" powered-by=\"xiumi.us\">\n<section style=\"display: inline-block;width: 100%;vertical-align: middle;border-width: 0px;align-self: center;flex: 0 0 auto;\">\n<section style=\"font-size: 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powered-by=\"xiumi.us\">\ud83d\udc47\u70b9\u51fb\u9605\u8bfb\u539f\u6587\u8fdb\u5165\u7f51\u5740<\/p>\n<\/section>\n<p style=\"display: none;margin-bottom: 24px;\"><mp-style-type data-value=\"3\"><\/mp-style-type><\/p>\n<div class=\"msg_source_url\"><a href=\"http:\/\/www.biocloudservice.com\/home.html\" target=\"_blank\" rel=\"noopener\">\u9605\u8bfb\u539f\u6587<\/a><\/div>\n<p><\/content><\/p>\n<div class=\"msg_source_url\"><a href=\"http:\/\/www.biocloudservice.com\/home.html\" target=\"_blank\" rel=\"noopener\">\u9605\u8bfb\u539f\u6587<\/a><\/div>\n<\/div>\n<p><\/body><br \/>\n<\/html><\/p>\n","protected":false},"excerpt":{"rendered":"<p>\u5947\u601d\u5999\u60f3\uff0c\u5229\u7528\u70ed\u56fe\u5c55\u793a\u591a\u79cd\u514d\u75ab\u6d78\u6da6\u7b97\u6cd5\u5206\u6790\u7ed3\u679c \u5c0f\u56fe \u751f\u4fe1\u679c 20 […]<\/p>\n","protected":false},"author":1,"featured_media":0,"comment_status":"closed","ping_status":"","sticky":false,"template":"","format":"standard","meta":{"jetpack_post_was_ever_published":false,"_jetpack_newsletter_access":""},"categories":[1],"tags":[],"jetpack_featured_media_url":"","_links":{"self":[{"href":"http:\/\/www.biocloudservice.com\/wordpress\/index.php?rest_route=\/wp\/v2\/posts\/59799"}],"collection":[{"href":"http:\/\/www.biocloudservice.com\/wordpress\/index.php?rest_route=\/wp\/v2\/posts"}],"about":[{"href":"http:\/\/www.biocloudservice.com\/wordpress\/index.php?rest_route=\/wp\/v2\/types\/post"}],"author":[{"embeddable":true,"href":"http:\/\/www.biocloudservice.com\/wordpress\/index.php?rest_route=\/wp\/v2\/users\/1"}],"replies":[{"embeddable":true,"href":"http:\/\/www.biocloudservice.com\/wordpress\/index.php?rest_route=%2Fwp%2Fv2%2Fcomments&post=59799"}],"version-history":[{"count":1,"href":"http:\/\/www.biocloudservice.com\/wordpress\/index.php?rest_route=\/wp\/v2\/posts\/59799\/revisions"}],"predecessor-version":[{"id":59808,"href":"http:\/\/www.biocloudservice.com\/wordpress\/index.php?rest_route=\/wp\/v2\/posts\/59799\/revisions\/59808"}],"wp:attachment":[{"href":"http:\/\/www.biocloudservice.com\/wordpress\/index.php?rest_route=%2Fwp%2Fv2%2Fmedia&parent=59799"}],"wp:term":[{"taxonomy":"category","embeddable":true,"href":"http:\/\/www.biocloudservice.com\/wordpress\/index.php?rest_route=%2Fwp%2Fv2%2Fcategories&post=59799"},{"taxonomy":"post_tag","embeddable":true,"href":"http:\/\/www.biocloudservice.com\/wordpress\/index.php?rest_route=%2Fwp%2Fv2%2Ftags&post=59799"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}

{"id":59799,"date":"2024-06-17T08:47:04","date_gmt":"2024-06-17T00:47:04","guid":{"rendered":"http:\/\/www.biocloudservice.com\/wordpress\/?p=59799"},"modified":"2024-06-17T08:47:04","modified_gmt":"2024-06-17T00:47:04","slug":"%e5%a5%87%e6%80%9d%e5%a6%99%e6%83%b3%ef%bc%8c%e5%88%a9%e7%94%a8%e7%83%ad%e5%9b%be%e5%b1%95%e7%a4%ba%e5%a4%9a%e7%a7%8d%e5%85%8d%e7%96%ab%e6%b5%b8%e6%b6%a6%e7%ae%97%e6%b3%95%e5%88%86%e6%9e%90%e7%bb%93","status":"publish","type":"post","link":"http:\/\/www.biocloudservice.com\/wordpress\/?p=59799","title":{"rendered":"\u5947\u601d\u5999\u60f3\uff0c\u5229\u7528\u70ed\u56fe\u5c55\u793a\u591a\u79cd\u514d\u75ab\u6d78\u6da6\u7b97\u6cd5\u5206\u6790\u7ed3\u679c"},"content":{"rendered":"

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normal;\">\u4eca\u5929\u5c0f\u56fe\u4e3a\u5927\u5bb6\u5e26\u6765\u7684\u5206\u4eab\u7070\u5e38\u7070\u5e38\u6709\u7528\uff0c\u5bf9\u4e8e\u5f88\u591a\u5c0f\u4f19\u4f34\u6765\u8bf4\uff0c\u514d\u75ab\u6d78\u6da6\u5206\u6790\u662f\u975e\u5e38\u719f\u6089\u7684\u5206\u6790\uff0c\u8be5\u5206\u6790\u5728\u751f\u4fe1\u6587\u7ae0\u4e2d\u51fa\u73b0\u7684\u9891\u7387\u5f88\u9ad8\uff0c\u4eca\u5929\u5c0f\u56fe\u60f3\u5229\u7528pheatmap\u5305\u5bf9\u591a\u79cd\u514d\u75ab\u6d78\u6da6\u7b97\u6cd5\u7ed3\u679c\u8fdb\u884c\u5c55\u793a\uff0c\u975e\u5e38\u503c\u5f97\u5c0f\u767d\u5b66\u4e60\uff0c\u6709\u9700\u8981\u7684\u5c0f\u4f19\u4f34\u53ef\u4ee5\u8ddf\u7740\u5c0f\u56fe\u5f00\u59cb\u4eca\u5929\u7684\u5b66\u4e60\uff0c\u8bdd\u4e0d\u591a\u8bf4\u5f00\u59cb\u4eca\u5929\u7684\u5206\u4eab\u3002<\/p>\n<\/section>\n<p style=\"white-space: normal;\" powered-by=\"xiumi.us\"><br \/><\/p>\n<section style=\"display: flex;flex-flow: row;text-align: center;justify-content: center;margin-top: 10px;margin-bottom: 20px;\" powered-by=\"xiumi.us\">\n<section style=\"display: inline-block;vertical-align: top;width: auto;flex: 0 0 0%;align-self: stretch;height: auto;background-position: 0% 0%;background-repeat: repeat-y;background-size: 100%;background-attachment: scroll;background-image: url("https:\/\/mmbiz.qpic.cn\/sz_mmbiz_png\/2wJ7bWfS0QsE0WHvkWry2FKeMAYHpVCt8brBFuQJOwA66yBoR4MuicGc5JfuzSNKnk5A4XpDDRDY6Fdc1IfI0uw\/640?wx_fmt=png");\">\n<section style=\"\" powered-by=\"xiumi.us\">\n<section style=\"display: inline-block;width: 5px;height: 10px;vertical-align: top;overflow: hidden;\"><svg viewbox=\"0 0 1 1\" style=\"float:left;line-height:0;width:0;vertical-align:top;\"><\/svg><\/section>\n<\/section>\n<\/section>\n<section style=\"display: inline-block;vertical-align: top;width: auto;flex: 0 0 auto;align-self: stretch;min-width: 10%;height: auto;background-color: rgb(254, 227, 229);box-shadow: rgb(0, 0, 0) 0px 0px 0px;\">\n<section style=\"margin-right: 0%;margin-left: 0%;\" powered-by=\"xiumi.us\">\n<section style=\"color: rgb(84, 54, 54);padding-right: 10px;padding-left: 10px;text-align: justify;font-size: 17px;letter-spacing: 3px;\">\n<p style=\"white-space: normal;\"><strong>1\u3001\u51c6\u5907\u9700\u8981\u7684R\u5305<\/strong><\/p>\n<\/section>\n<\/section>\n<\/section>\n<section style=\"display: inline-block;vertical-align: top;width: auto;flex: 0 0 0%;align-self: stretch;height: auto;background-position: 0% 0%;background-repeat: repeat-y;background-size: 100%;background-attachment: scroll;background-image: url("https:\/\/mmbiz.qpic.cn\/sz_mmbiz_png\/2wJ7bWfS0QsE0WHvkWry2FKeMAYHpVCteKUSlkfZIziayljcNMICo3dSZwG48HuytqPVW4Ks40ibhMuicbHgk88Gg\/640?wx_fmt=png");\">\n<section style=\"\" powered-by=\"xiumi.us\">\n<section style=\"display: inline-block;width: 5px;height: 10px;vertical-align: top;overflow: hidden;\"><svg viewbox=\"0 0 1 1\" style=\"float:left;line-height:0;width:0;vertical-align:top;\"><\/svg><\/section>\n<\/section>\n<\/section>\n<\/section>\n<section class=\"code-snippet__fix code-snippet__js\">\n<ul class=\"code-snippet__line-index code-snippet__js\">\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<\/ul>\n<pre class=\"code-snippet__js\" data-lang=\"c\"><code><span class=\"code-snippet_outer\">#\u5b89\u88c5\u9700\u8981\u7684R\u5305<\/span><\/code><code><span class=\"code-snippet_outer\">BiocManager::install(<span class=\"code-snippet__string\">\"pheatmap\"<\/span>)<\/span><\/code><code><span class=\"code-snippet_outer\">install.packages(\u201ctidyverse\u201d)<\/span><\/code><code><span class=\"code-snippet_outer\">install.packages(<span class=\"code-snippet__string\">\"RColorBrewer\"<\/span>)<\/span><\/code><code><span class=\"code-snippet_outer\">install.packages(<span class=\"code-snippet__string\">\"gplots\"<\/span>)<\/span><\/code><code><span class=\"code-snippet_outer\">#\u52a0\u8f7d\u9700\u8981\u7684R\u5305<\/span><\/code><code><span class=\"code-snippet_outer\">library(pheatmap)<\/span><\/code><code><span class=\"code-snippet_outer\">library(RColorBrewer)<\/span><\/code><code><span class=\"code-snippet_outer\">library(immunedeconv)<\/span><\/code><code><span class=\"code-snippet_outer\">library(tidyverse)<\/span><\/code><code><span class=\"code-snippet_outer\">library(gplots)<\/span><\/code><\/pre>\n<\/section>\n<p style=\"white-space: normal;\" powered-by=\"xiumi.us\"><br \/><\/p>\n<section style=\"display: flex;flex-flow: row;text-align: center;justify-content: center;margin-top: 10px;margin-bottom: 20px;\" powered-by=\"xiumi.us\">\n<section style=\"display: inline-block;vertical-align: top;width: auto;flex: 0 0 0%;align-self: stretch;height: auto;background-position: 0% 0%;background-repeat: repeat-y;background-size: 100%;background-attachment: scroll;background-image: url("https:\/\/mmbiz.qpic.cn\/sz_mmbiz_png\/2wJ7bWfS0QsE0WHvkWry2FKeMAYHpVCt8brBFuQJOwA66yBoR4MuicGc5JfuzSNKnk5A4XpDDRDY6Fdc1IfI0uw\/640?wx_fmt=png");\">\n<section style=\"\" powered-by=\"xiumi.us\">\n<section style=\"display: inline-block;width: 5px;height: 10px;vertical-align: top;overflow: hidden;\"><svg viewbox=\"0 0 1 1\" style=\"float:left;line-height:0;width:0;vertical-align:top;\"><\/svg><\/section>\n<\/section>\n<\/section>\n<section style=\"display: inline-block;vertical-align: top;width: auto;flex: 0 0 auto;align-self: stretch;min-width: 10%;height: auto;background-color: rgb(254, 227, 229);box-shadow: rgb(0, 0, 0) 0px 0px 0px;\">\n<section style=\"margin-right: 0%;margin-left: 0%;\" powered-by=\"xiumi.us\">\n<section style=\"color: rgb(84, 54, 54);padding-right: 10px;padding-left: 10px;text-align: justify;font-size: 17px;letter-spacing: 3px;\">\n<p style=\"white-space: normal;\"><strong>2\u3001\u8bfb\u53d6\u8f93\u5165\u6570\u636e<\/strong><\/p>\n<\/section>\n<\/section>\n<\/section>\n<section style=\"display: inline-block;vertical-align: top;width: auto;flex: 0 0 0%;align-self: stretch;height: auto;background-position: 0% 0%;background-repeat: repeat-y;background-size: 100%;background-attachment: scroll;background-image: url("https:\/\/mmbiz.qpic.cn\/sz_mmbiz_png\/2wJ7bWfS0QsE0WHvkWry2FKeMAYHpVCteKUSlkfZIziayljcNMICo3dSZwG48HuytqPVW4Ks40ibhMuicbHgk88Gg\/640?wx_fmt=png");\">\n<section style=\"\" powered-by=\"xiumi.us\">\n<section style=\"display: inline-block;width: 5px;height: 10px;vertical-align: top;overflow: hidden;\"><svg viewbox=\"0 0 1 1\" style=\"float:left;line-height:0;width:0;vertical-align:top;\"><\/svg><\/section>\n<\/section>\n<\/section>\n<\/section>\n<section class=\"code-snippet__fix code-snippet__js\">\n<ul class=\"code-snippet__line-index code-snippet__js\">\n<li><\/li>\n<li><\/li>\n<\/ul>\n<pre class=\"code-snippet__js\" data-lang=\"c\"><code><span class=\"code-snippet_outer\">#EXP.txt\u57fa\u56e0\u8868\u8fbe\u77e9\u9635\uff0c\u884c\u540d\u4e3a\u57fa\u56e0\u540d\uff0c\u5217\u540d\u4e3a\u6837\u672c\u540d<\/span><\/code><code><span class=\"code-snippet_outer\">dat <- read.table(<span class=\"code-snippet__string\">\"EXP.txt\"<\/span>,sep = <span class=\"code-snippet__string\">\"t\"<\/span>,row.names = <span class=\"code-snippet__number\">1<\/span>,header = T,stringsAsFactors = F,check.names = F)<\/span><\/code><\/pre>\n<\/section>\n<section style=\"text-align: center;margin-top: 10px;margin-bottom: 10px;line-height: 0;\" powered-by=\"xiumi.us\">\n<section style=\"vertical-align: middle;display: inline-block;line-height: 0;\"><img decoding=\"async\" class=\"rich_pages wxw-img\" data-ratio=\"0.287962962962963\" data-s=\"300,640\" data-type=\"jpeg\" data-w=\"1080\" style=\"vertical-align: middle;width: 100%;height: auto !important;\" src=\"https:\/\/i0.wp.com\/www.biocloudservice.com\/wordpress\/wp-content\/uploads\/2024\/06\/1_8aLhl6vJFdmZYPTP00wqqDSnRyXL1Q.jpg?w=640\" onerror=\"this.src='https:\/\/mmbiz.qpic.cn\/sz_mmbiz_jpg\/2wJ7bWfS0QsE0WHvkWry2FKeMAYHpVCtOwiccFicBQXCwKNUs2ibs9brF8G8aLhl6vJFdmZYPTP00wqqDSnRyXL1Q\/640?wx_fmt=jpeg'\" data-recalc-dims=\"1\" \/><\/section>\n<\/section>\n<p style=\"white-space: normal;\" powered-by=\"xiumi.us\"><br \/><\/p>\n<section class=\"code-snippet__fix code-snippet__js\">\n<ul class=\"code-snippet__line-index code-snippet__js\">\n<li><\/li>\n<li><\/li>\n<\/ul>\n<pre class=\"code-snippet__js\" data-lang=\"c\"><code><span class=\"code-snippet_outer\"><span class=\"code-snippet__meta\">#group.txt\uff0c\u98ce\u9669\u8bc4\u5206\u9ad8\u4f4e\u5206\u7ec4\u6837\u672c\u4fe1\u606f\u6587\u4ef6,\u7b2c\u4e00\u5217\u4e3a\u6837\u672c\u540d\uff0c\u7b2c\u4e8c\u5217\u4e3a\u9ad8\u4f4e\u5206\u7ec4\u4fe1\u606f<\/span><\/span><\/code><code><span class=\"code-snippet_outer\">ann <- read.table(<span class=\"code-snippet__string\">\"group.txt\"<\/span>,sep = <span class=\"code-snippet__string\">\"t\"<\/span>,header = T,stringsAsFactors = F,check.names = F)<\/span><\/code><\/pre>\n<\/section>\n<section style=\"text-align: center;margin-top: 10px;margin-bottom: 10px;line-height: 0;\" powered-by=\"xiumi.us\">\n<section style=\"vertical-align: middle;display: inline-block;line-height: 0;\"><img decoding=\"async\" class=\"rich_pages wxw-img\" data-ratio=\"0.29907407407407405\" data-s=\"300,640\" data-type=\"jpeg\" data-w=\"1080\" style=\"vertical-align: middle;width: 100%;height: auto !important;\" src=\"https:\/\/i0.wp.com\/www.biocloudservice.com\/wordpress\/wp-content\/uploads\/2024\/06\/2_x8gKKP6MtJz2IgDDKFPGt91HzW9gjg.jpg?w=640\" onerror=\"this.src='https:\/\/mmbiz.qpic.cn\/sz_mmbiz_jpg\/2wJ7bWfS0QsE0WHvkWry2FKeMAYHpVCtmor0kX1rcKTHYL2VYdQRBysNx8gKKP6MtJz2IgDDKFPGt91HzW9gjg\/640?wx_fmt=jpeg'\" data-recalc-dims=\"1\" \/><\/section>\n<\/section>\n<p style=\"white-space: normal;\" powered-by=\"xiumi.us\"><br \/><\/p>\n<section class=\"code-snippet__fix code-snippet__js\">\n<ul class=\"code-snippet__line-index code-snippet__js\">\n<li><\/li>\n<li><\/li>\n<\/ul>\n<pre class=\"code-snippet__js\" data-lang=\"c\"><code><span class=\"code-snippet_outer\">#\u5229\u7528xcell\u7b97\u6cd5\u8fdb\u884c\u514d\u75ab\u6d78\u6da6\u5206\u6790<\/span><\/code><code><span class=\"code-snippet_outer\">xcell<-immunedeconv::deconvolute(dat, <span class=\"code-snippet__string\">\"xcell\"<\/span>)<\/span><\/code><\/pre>\n<\/section>\n<section style=\"text-align: center;margin-top: 10px;margin-bottom: 10px;line-height: 0;\" powered-by=\"xiumi.us\">\n<section style=\"vertical-align: middle;display: inline-block;line-height: 0;\"><img decoding=\"async\" class=\"rich_pages wxw-img\" data-ratio=\"0.2796296296296296\" data-s=\"300,640\" data-type=\"jpeg\" data-w=\"1080\" style=\"vertical-align: middle;width: 100%;height: auto !important;\" src=\"https:\/\/i0.wp.com\/www.biocloudservice.com\/wordpress\/wp-content\/uploads\/2024\/06\/3_qRj6Ow8lgTzthp5MbtIgOkx1Aiaclg.jpg?w=640\" onerror=\"this.src='https:\/\/mmbiz.qpic.cn\/sz_mmbiz_jpg\/2wJ7bWfS0QsE0WHvkWry2FKeMAYHpVCt3p26XqSu9Ww27Xu4Km5Vl7BuTqRj6Ow8lgTzthp5MbtIgOkx1Aiaclg\/640?wx_fmt=jpeg'\" data-recalc-dims=\"1\" \/><\/section>\n<\/section>\n<p style=\"white-space: normal;\" powered-by=\"xiumi.us\"><br \/><\/p>\n<section class=\"code-snippet__fix code-snippet__js\">\n<ul class=\"code-snippet__line-index code-snippet__js\">\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<\/ul>\n<pre class=\"code-snippet__js\" data-lang=\"c\"><code><span class=\"code-snippet_outer\">#\u5c06\u6570\u636e\u7c7b\u578b\u8f6c\u5316\u4e3a\u6570\u636e\u6846<\/span><\/code><code><span class=\"code-snippet_outer\">xcell<-as.data.frame(xcell)<\/span><\/code><code><span class=\"code-snippet_outer\">#\u6dfb\u52a0\u514d\u75ab\u6d78\u6da6\u7b97\u6cd5\u540d\u79f0<\/span><\/code><code><span class=\"code-snippet_outer\">xcell$cell_type<-paste0(xcell$cell_type,<span class=\"code-snippet__string\">\"_XCELL\"<\/span>)<\/span><\/code><code><span class=\"code-snippet_outer\">#\u6dfb\u52a0\u65b0\u7684\u5217\u540d<\/span><\/code><code><span class=\"code-snippet_outer\">xcell$Immunemethod<-<span class=\"code-snippet__string\">\"XCELL\"<\/span><\/span><\/code><code><span class=\"code-snippet_outer\">#\u5229\u7528epic\u7b97\u6cd5\u8fdb\u884c\u514d\u75ab\u6d78\u6da6\u5206\u6790<\/span><\/code><code><span class=\"code-snippet_outer\">epic<-immunedeconv::deconvolute(dat, <span class=\"code-snippet__string\">\"epic\"<\/span>)<\/span><\/code><\/pre>\n<\/section>\n<section style=\"text-align: center;margin-top: 10px;margin-bottom: 10px;line-height: 0;\" powered-by=\"xiumi.us\">\n<section style=\"vertical-align: middle;display: inline-block;line-height: 0;\"><img decoding=\"async\" data-ratio=\"0.2462962962962963\" data-s=\"300,640\" data-type=\"jpeg\" data-w=\"1080\" style=\"vertical-align: middle;width: 100%;height: auto !important;\" src=\"https:\/\/i0.wp.com\/www.biocloudservice.com\/wordpress\/wp-content\/uploads\/2024\/06\/4_90DKibfBoic8HWibg6as0RzSJ2VRQQ.jpg?w=640\" onerror=\"this.src='https:\/\/mmbiz.qpic.cn\/sz_mmbiz_jpg\/2wJ7bWfS0QsE0WHvkWry2FKeMAYHpVCtx1ozrFKVXiaXqV3P5MMEHwkHyOX990DKibfBoic8HWibg6as0RzSJ2VRQQ\/640?wx_fmt=jpeg'\" data-recalc-dims=\"1\" \/><\/section>\n<\/section>\n<p style=\"white-space: normal;\" powered-by=\"xiumi.us\"><br \/><\/p>\n<section class=\"code-snippet__fix code-snippet__js\">\n<ul class=\"code-snippet__line-index code-snippet__js\">\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<\/ul>\n<pre class=\"code-snippet__js\" data-lang=\"c\"><code><span class=\"code-snippet_outer\">#\u5c06\u6570\u636e\u7c7b\u578b\u8f6c\u5316\u4e3a\u6570\u636e\u6846<\/span><\/code><code><span class=\"code-snippet_outer\">epic<-as.data.frame(epic)<\/span><\/code><code><span class=\"code-snippet_outer\">#\u6dfb\u52a0\u514d\u75ab\u6d78\u6da6\u7b97\u6cd5\u540d\u79f0<\/span><\/code><code><span class=\"code-snippet_outer\">epic$cell_type<-paste0(epic$cell_type,<span class=\"code-snippet__string\">\"_EPIC\"<\/span>)<\/span><\/code><code><span class=\"code-snippet_outer\">#\u6dfb\u52a0\u65b0\u7684\u5217\u540d<\/span><\/code><code><span class=\"code-snippet_outer\">epic$Immunemethod<-<span class=\"code-snippet__string\">\"EPIC\"<\/span><\/span><\/code><code><span class=\"code-snippet_outer\">#\u5229\u7528mcp_counter\u7b97\u6cd5\u8fdb\u884c\u514d\u75ab\u6d78\u6da6\u5206\u6790<\/span><\/code><code><span class=\"code-snippet_outer\">mcp_counter<-immunedeconv::deconvolute(dat,<span class=\"code-snippet__string\">\"mcp_counter\"<\/span>)<\/span><\/code><\/pre>\n<\/section>\n<section style=\"text-align: center;margin-top: 10px;margin-bottom: 10px;line-height: 0;\" powered-by=\"xiumi.us\">\n<section style=\"vertical-align: middle;display: inline-block;line-height: 0;\"><img decoding=\"async\" class=\"rich_pages wxw-img\" data-ratio=\"0.28703703703703703\" data-s=\"300,640\" data-type=\"jpeg\" data-w=\"1080\" style=\"vertical-align: middle;width: 100%;height: auto !important;\" src=\"https:\/\/i0.wp.com\/www.biocloudservice.com\/wordpress\/wp-content\/uploads\/2024\/06\/5_2tUCtZl2qcdR0Osy554NQLEx84V6WA.jpg?w=640\" onerror=\"this.src='https:\/\/mmbiz.qpic.cn\/sz_mmbiz_jpg\/2wJ7bWfS0QsE0WHvkWry2FKeMAYHpVCt9z1FMuoqazZPJ9JLZ2ASAXaZ2tUCtZl2qcdR0Osy554NQLEx84V6WA\/640?wx_fmt=jpeg'\" data-recalc-dims=\"1\" \/><\/section>\n<\/section>\n<p style=\"white-space: normal;\" powered-by=\"xiumi.us\"><br \/><\/p>\n<section class=\"code-snippet__fix code-snippet__js\">\n<ul class=\"code-snippet__line-index code-snippet__js\">\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<\/ul>\n<pre class=\"code-snippet__js\" data-lang=\"c\"><code><span class=\"code-snippet_outer\">#\u5c06\u6570\u636e\u7c7b\u578b\u8f6c\u5316\u4e3a\u6570\u636e\u6846<\/span><\/code><code><span class=\"code-snippet_outer\">mcp_counter<-as.data.frame(mcp_counter)<\/span><\/code><code><span class=\"code-snippet_outer\">#\u6dfb\u52a0\u514d\u75ab\u6d78\u6da6\u7b97\u6cd5\u540d\u79f0<\/span><\/code><code><span class=\"code-snippet_outer\">mcp_counter$cell_type<-paste0(mcp_counter$cell_type,<span class=\"code-snippet__string\">\"_MCPCOUNTER\"<\/span>)<\/span><\/code><code><span class=\"code-snippet_outer\">##\u6dfb\u52a0\u65b0\u7684\u5217\u540d<\/span><\/code><code><span class=\"code-snippet_outer\">mcp_counter$Immunemethod<-<span class=\"code-snippet__string\">\"MCPCOUNTER\"<\/span><\/span><\/code><code><span class=\"code-snippet_outer\">#\u5408\u5e76xcell,epic\u548cmcp_counter\u4e09\u79cd\u7b97\u6cd5\u514d\u75ab\u7ec6\u80de\u77e9\u9635<\/span><\/code><code><span class=\"code-snippet_outer\">Immune<-rbind(xcell,epic,mcp_counter)<\/span><\/code><code><span class=\"code-snippet_outer\">#\u63d0\u53d6\u514d\u75ab\u7ec6\u80de\u77e9\u9635<\/span><\/code><code><span class=\"code-snippet_outer\"><span class=\"code-snippet__keyword\">final<\/span><-select(Immune,-Immunemethod)<\/span><\/code><code><span class=\"code-snippet_outer\">#\u628a\u5217\u540d\u6539\u6210\u884c\u540d<\/span><\/code><code><span class=\"code-snippet_outer\"><span class=\"code-snippet__keyword\">final<\/span><-column_to_rownames(<span class=\"code-snippet__keyword\">final<\/span>,var=<span class=\"code-snippet__string\">\"cell_type\"<\/span>)<\/span><\/code><code><span class=\"code-snippet_outer\">#\u5339\u914d\u9ad8\u4f4e\u98ce\u9669\u7ec4\u6837\u672c\u4fe1\u606f<\/span><\/code><code><span class=\"code-snippet_outer\">Immunesample<-match(ann$sample,colnames(<span class=\"code-snippet__keyword\">final<\/span>))<\/span><\/code><code><span class=\"code-snippet_outer\"><span class=\"code-snippet__keyword\">final<\/span><-<span class=\"code-snippet__keyword\">final<\/span>[,Immunesample]<\/span><\/code><code><span class=\"code-snippet_outer\"># \u5b9a\u4e49\u989c\u8272<\/span><\/code><code><span class=\"code-snippet_outer\"><span class=\"code-snippet__number\">3.<\/span>\u7ed8\u5236\u514d\u75ab\u7ec6\u80de\u70ed\u56fe<\/span><\/code><code><span class=\"code-snippet_outer\">methods.col <- brewer.pal(n = length(unique(Immune$immMethod)),name = <span class=\"code-snippet__string\">\"Paired\"<\/span>)<\/span><\/code><code><span class=\"code-snippet_outer\"># \u521b\u5efa\u6ce8\u91ca<\/span><\/code><code><span class=\"code-snippet_outer\"># \u5217\u6ce8\u91ca\uff0c\u4f4d\u4e8e\u70ed\u56fe\u9876\u7aef<\/span><\/code><code><span class=\"code-snippet_outer\">annCol <- data.frame(RiskType = ann$group,<\/span><\/code><code><span class=\"code-snippet_outer\"> # \u4ee5\u4e0a\u662frisk score\u548crisk type\u4e24\u79cd\u6ce8\u91ca\uff0c\u53ef\u4ee5\u6309\u7167\u8fd9\u6837\u7684\u683c\u5f0f\u7ee7\u7eed\u6dfb\u52a0\u66f4\u591a\u79cd\u7c7b\u7684\u6ce8\u91ca\u4fe1\u606f\uff0c\u8bb0\u5f97\u5728\u4e0b\u9762\u7684annColors\u91cc\u8bbe\u7f6e\u989c\u8272<\/span><\/code><code><span class=\"code-snippet_outer\"> row.names = ann$sample,<\/span><\/code><code><span class=\"code-snippet_outer\"> stringsAsFactors = F)<\/span><\/code><code><span class=\"code-snippet_outer\"><br \/><\/span><\/code><code><span class=\"code-snippet_outer\"># \u884c\u6ce8\u91ca\uff0c\u4f4d\u4e8e\u70ed\u56fe\u5de6\u4fa7<\/span><\/code><code><span class=\"code-snippet_outer\">annRow<-data.frame(Methods=factor(Immune$Immunemethod,levels=unique(Immune$Immunemethod)),<\/span><\/code><code><span class=\"code-snippet_outer\">row.names = Immune$cell_type,<\/span><\/code><code><span class=\"code-snippet_outer\"> stringsAsFactors = F)<\/span><\/code><code><span class=\"code-snippet_outer\"><br \/><\/span><\/code><code><span class=\"code-snippet_outer\"># \u4e3a\u5404\u6ce8\u91ca\u4fe1\u606f\u8bbe\u7f6e\u989c\u8272<\/span><\/code><code><span class=\"code-snippet_outer\">annColors <- <span class=\"code-snippet__built_in\">list<\/span>(Methods = c(<span class=\"code-snippet__string\">\"XCELL\"<\/span> = methods.col[<span class=\"code-snippet__number\">1<\/span>],<\/span><\/code><code><span class=\"code-snippet_outer\"> <span class=\"code-snippet__string\">\"EPIC\"<\/span> = methods.col[<span class=\"code-snippet__number\">2<\/span>],<\/span><\/code><code><span class=\"code-snippet_outer\"> <span class=\"code-snippet__string\">\"MCPCOUNTER\"<\/span> = methods.col[<span class=\"code-snippet__number\">3<\/span>]),<\/span><\/code><code><span class=\"code-snippet_outer\"> # \u4e0b\u9762\u662f\u5217\u6ce8\u91ca\u7684\u989c\u8272\uff0c\u53ef\u4f9d\u6b64\u8bbe\u7f6e\u66f4\u591a\u6ce8\u91ca\u7684\u989c\u8272<\/span><\/code><code><span class=\"code-snippet_outer\"> <span class=\"code-snippet__string\">\"RiskType\"<\/span> = c(<span class=\"code-snippet__string\">\"High\"<\/span> = <span class=\"code-snippet__string\">\"red\"<\/span>,<span class=\"code-snippet__string\">\"Low\"<\/span> = <span class=\"code-snippet__string\">\"blue\"<\/span>))<\/span><\/code><code><span class=\"code-snippet_outer\"><br \/><\/span><\/code><code><span class=\"code-snippet_outer\"># \u6570\u636e\u6807\u51c6\u5316<\/span><\/code><code><span class=\"code-snippet_outer\">indata <- <span class=\"code-snippet__keyword\">final<\/span>[,colSums(<span class=\"code-snippet__keyword\">final<\/span>) > <span class=\"code-snippet__number\">0<\/span>] # \u786e\u4fdd\u6ca1\u6709\u5bcc\u96c6\u5168\u4e3a<span class=\"code-snippet__number\">0<\/span>\u7684\u7ec6\u80de<\/span><\/code><code><span class=\"code-snippet_outer\">#\u786e\u5b9a\u514d\u75ab\u7ec6\u80de\u542b\u91cf\u8303\u56f4<\/span><\/code><code><span class=\"code-snippet_outer\">standarize.fun <- function(indata=<span class=\"code-snippet__literal\">NULL<\/span>, halfwidth=<span class=\"code-snippet__literal\">NULL<\/span>, centerFlag=T, scaleFlag=T) { <\/span><\/code><code><span class=\"code-snippet_outer\"> outdata=t(scale(t(indata), center=centerFlag, scale=scaleFlag))<\/span><\/code><code><span class=\"code-snippet_outer\"> <span class=\"code-snippet__keyword\">if<\/span> (!is.null(halfwidth)) {<\/span><\/code><code><span class=\"code-snippet_outer\"> outdata[outdata>halfwidth]=halfwidth<\/span><\/code><code><span class=\"code-snippet_outer\"> outdata[outdata<(-halfwidth)]= -halfwidth<\/span><\/code><code><span class=\"code-snippet_outer\"> }<\/span><\/code><code><span class=\"code-snippet_outer\"> <span class=\"code-snippet__keyword\">return<\/span>(outdata)<\/span><\/code><code><span class=\"code-snippet_outer\">}<\/span><\/code><code><span class=\"code-snippet_outer\">plotdata <- standarize.fun(indata,halfwidth = <span class=\"code-snippet__number\">2<\/span>)<\/span><\/code><code><span class=\"code-snippet_outer\"><span class=\"code-snippet__meta\"># pheatmap\u7ed8\u56fe<\/span><\/span><\/code><code><span class=\"code-snippet_outer\">pheatmap::pheatmap(mat = as.matrix(plotdata), # \u6807\u51c6\u5316\u540e\u7684\u6570\u503c\u77e9\u9635<\/span><\/code><code><span class=\"code-snippet_outer\"> border_color = NA, # \u65e0\u8fb9\u6846\u8272<\/span><\/code><code><span class=\"code-snippet_outer\"> color = bluered(<span class=\"code-snippet__number\">64<\/span>), # \u70ed\u56fe\u989c\u8272\u4e3a\u7ea2\u84dd<\/span><\/code><code><span class=\"code-snippet_outer\"> cluster_rows = F, # \u884c\u4e0d\u805a\u7c7b<\/span><\/code><code><span class=\"code-snippet_outer\"> cluster_cols = F, # \u5217\u4e0d\u805a\u7c7b<\/span><\/code><code><span class=\"code-snippet_outer\"> show_rownames = T, # \u663e\u793a\u884c\u540d<\/span><\/code><code><span class=\"code-snippet_outer\"> show_colnames = F, # \u4e0d\u663e\u793a\u5217\u540d<\/span><\/code><code><span class=\"code-snippet_outer\"> annotation_col = annCol, # \u5217\u6ce8\u91ca<\/span><\/code><code><span class=\"code-snippet_outer\"> annotation_row = annRow, # \u884c\u6ce8\u91ca<\/span><\/code><code><span class=\"code-snippet_outer\"> annotation_colors = annColors, # \u6ce8\u91ca\u989c\u8272<\/span><\/code><code><span class=\"code-snippet_outer\"> gaps_col = table(annCol$RiskType)[<span class=\"code-snippet__number\">2<\/span>], # \u5217\u5206\u5272<\/span><\/code><code><span class=\"code-snippet_outer\"> gaps_row = cumsum(table(annRow$Methods)), # \u884c\u5206\u5272<\/span><\/code><code><span class=\"code-snippet_outer\"> cellwidth = <span class=\"code-snippet__number\">0.8<\/span>, # \u5143\u7d20\u5bbd\u5ea6<\/span><\/code><code><span class=\"code-snippet_outer\"> cellheight = <span class=\"code-snippet__number\">10<\/span>, # \u5143\u7d20\u9ad8\u5ea6<\/span><\/code><code><span class=\"code-snippet_outer\"> filename = <span class=\"code-snippet__string\">\"immune_heatmap_by_pheatmap.pdf\"<\/span>)#\u4fdd\u5b58\u56fe\u7247<\/span><\/code><\/pre>\n<\/section>\n<section style=\"text-align: center;margin-top: 10px;margin-bottom: 10px;line-height: 0;\" powered-by=\"xiumi.us\">\n<section style=\"vertical-align: middle;display: inline-block;line-height: 0;\"><img decoding=\"async\" class=\"rich_pages wxw-img\" data-ratio=\"1.3875\" data-s=\"300,640\" data-type=\"jpeg\" data-w=\"480\" style=\"vertical-align: middle;width: 100%;height: auto !important;\" src=\"https:\/\/i0.wp.com\/www.biocloudservice.com\/wordpress\/wp-content\/uploads\/2024\/06\/6_uQaibQaw52uBm83KFWGa6DhxeAbMBQ.jpg?w=640\" onerror=\"this.src='https:\/\/mmbiz.qpic.cn\/sz_mmbiz_jpg\/2wJ7bWfS0QsE0WHvkWry2FKeMAYHpVCtBTEABUtKSzlvRuVCjQEX1O5iaxuQaibQaw52uBm83KFWGa6DhxeAbMBQ\/640?wx_fmt=jpeg'\" data-recalc-dims=\"1\" \/><\/section>\n<\/section>\n<section style=\"font-size: 15px;line-height: 1.8;letter-spacing: 1.5px;\" powered-by=\"xiumi.us\">\n<p 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normal;\">\u514d\u75ab\u6d78\u6da6\u76f8\u5173\u5206\u6790\u5185\u5bb9\uff0c\u4f8b\u5982\u5355\u6837\u672c\u5bcc\u96c6\u7b97\u6cd5\u5206\u6790\u514d\u75ab\u6d78\u6da6\u4e30\u5ea6(http:\/\/www.biocloudservice.com\/106\/106.php)\uff0c\u8ba1\u7b9764\u79cd\u514d\u75ab\u7ec6\u80de\u76f8\u5bf9\u542b\u91cf(http:\/\/www.biocloudservice.com\/107\/107.php)\uff0cpanImmune\u514d\u75ab\u6d78\u6da6\u5206\u6790(http:\/\/www.biocloudservice.com\/782\/782.php)\u7b49\u90fd\u53ef\u4ee5\u7528\u672c\u516c\u53f8\u65b0\u5f00\u53d1\u7684\u96f6\u4ee3\u7801\u4e91\u5e73\u53f0\u751f\u4fe1\u5206\u6790\u5c0f\u5de5\u5177\uff0c\u4e00\u952e\u5b8c\u6210\u8be5\u5206\u6790\u5965\uff0c\u611f\u5174\u8da3\u7684\u5c0f\u4f19\u4f34\u6b22\u8fce\u6765\u5c1d\u8bd5\u5965\uff0c\u7f51\u5740\uff1ahttp:\/\/www.biocloudservice.com\/home.html\u3002\u4eca\u5929\u5c0f\u56fe\u7684\u5206\u4eab\u5c31\u5230\u8fd9\u91cc\uff0c\u4e0b\u671f\u5728\u89c1\u5965\u3002<\/p>\n<p style=\"white-space: normal;\"><br 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data-linktype=\"2\" rel=\"noopener\">\u4e0d\u7528\u82b1\u94b1\u5c31\u80fd\u5b66\u5230\u7684GWAS\u6570\u636e\u901a\u8def\u5206\u6790-MAGMA \u53c8\u8d5a\u5230\u4e86\uff01<\/a><\/p>\n<\/section>\n<\/section>\n<\/section>\n<\/td>\n<\/tr>\n<tr opera-tn-ra-comp=\"_$.pages:0.layers:0.comps:27.classicTable1:3\" powered-by=\"xiumi.us\">\n<td colspan=\"1\" rowspan=\"1\" opera-tn-ra-cell=\"_$.pages:0.layers:0.comps:27.classicTable1:3.td@@0\" style=\"border-top: 0px none rgb(62, 62, 62);border-right: 0px none rgb(62, 62, 62);border-left: 0px none rgb(62, 62, 62);border-bottom-color: rgb(202, 198, 198);border-bottom-style: dashed;background-color: rgb(247, 247, 247);padding-right: 5px;padding-left: 5px;\" width=\"96.3700%\">\n<section style=\"text-align: center;justify-content: center;display: flex;flex-flow: row;\" powered-by=\"xiumi.us\">\n<section style=\"display: inline-block;width: 100%;vertical-align: middle;border-width: 0px;align-self: center;flex: 0 0 auto;\">\n<section style=\"font-size: 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powered-by=\"xiumi.us\">\ud83d\udc47\u70b9\u51fb\u9605\u8bfb\u539f\u6587\u8fdb\u5165\u7f51\u5740<\/p>\n<\/section>\n<p style=\"display: none;margin-bottom: 24px;\"><mp-style-type data-value=\"3\"><\/mp-style-type><\/p>\n<div class=\"msg_source_url\"><a href=\"http:\/\/www.biocloudservice.com\/home.html\" target=\"_blank\" rel=\"noopener\">\u9605\u8bfb\u539f\u6587<\/a><\/div>\n<p><\/content><\/p>\n<div class=\"msg_source_url\"><a href=\"http:\/\/www.biocloudservice.com\/home.html\" target=\"_blank\" rel=\"noopener\">\u9605\u8bfb\u539f\u6587<\/a><\/div>\n<\/div>\n<p><\/body><br \/>\n<\/html><\/p>\n","protected":false},"excerpt":{"rendered":"<p>\u5947\u601d\u5999\u60f3\uff0c\u5229\u7528\u70ed\u56fe\u5c55\u793a\u591a\u79cd\u514d\u75ab\u6d78\u6da6\u7b97\u6cd5\u5206\u6790\u7ed3\u679c \u5c0f\u56fe \u751f\u4fe1\u679c 20 […]<\/p>\n","protected":false},"author":1,"featured_media":0,"comment_status":"closed","ping_status":"","sticky":false,"template":"","format":"standard","meta":{"jetpack_post_was_ever_published":false,"_jetpack_newsletter_access":""},"categories":[1],"tags":[],"jetpack_featured_media_url":"","_links":{"self":[{"href":"http:\/\/www.biocloudservice.com\/wordpress\/index.php?rest_route=\/wp\/v2\/posts\/59799"}],"collection":[{"href":"http:\/\/www.biocloudservice.com\/wordpress\/index.php?rest_route=\/wp\/v2\/posts"}],"about":[{"href":"http:\/\/www.biocloudservice.com\/wordpress\/index.php?rest_route=\/wp\/v2\/types\/post"}],"author":[{"embeddable":true,"href":"http:\/\/www.biocloudservice.com\/wordpress\/index.php?rest_route=\/wp\/v2\/users\/1"}],"replies":[{"embeddable":true,"href":"http:\/\/www.biocloudservice.com\/wordpress\/index.php?rest_route=%2Fwp%2Fv2%2Fcomments&post=59799"}],"version-history":[{"count":1,"href":"http:\/\/www.biocloudservice.com\/wordpress\/index.php?rest_route=\/wp\/v2\/posts\/59799\/revisions"}],"predecessor-version":[{"id":59808,"href":"http:\/\/www.biocloudservice.com\/wordpress\/index.php?rest_route=\/wp\/v2\/posts\/59799\/revisions\/59808"}],"wp:attachment":[{"href":"http:\/\/www.biocloudservice.com\/wordpress\/index.php?rest_route=%2Fwp%2Fv2%2Fmedia&parent=59799"}],"wp:term":[{"taxonomy":"category","embeddable":true,"href":"http:\/\/www.biocloudservice.com\/wordpress\/index.php?rest_route=%2Fwp%2Fv2%2Fcategories&post=59799"},{"taxonomy":"post_tag","embeddable":true,"href":"http:\/\/www.biocloudservice.com\/wordpress\/index.php?rest_route=%2Fwp%2Fv2%2Ftags&post=59799"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}