{"id":60048,"date":"2024-06-17T10:44:15","date_gmt":"2024-06-17T02:44:15","guid":{"rendered":"http:\/\/www.biocloudservice.com\/wordpress\/?p=60048"},"modified":"2024-06-17T10:44:15","modified_gmt":"2024-06-17T02:44:15","slug":"%e8%9b%8b%e7%99%bd%e8%b4%a8%e7%bb%84%e5%ad%a6%e7%9a%84%e7%91%9e%e5%a3%ab%e5%86%9b%e5%88%80%ef%bc%9ampwr%e8%ae%a9%e5%ae%9e%e9%aa%8c%e5%88%86%e6%9e%90%e5%8f%98%e5%be%97%e5%a6%82%e6%ad%a4%e7%ae%80-2","status":"publish","type":"post","link":"http:\/\/www.biocloudservice.com\/wordpress\/?p=60048","title":{"rendered":"\u86cb\u767d\u8d28\u7ec4\u5b66\u7684\u745e\u58eb\u519b\u5200\uff1ampwR\u8ba9\u5b9e\u9a8c\u5206\u6790\u53d8\u5f97\u5982\u6b64\u7b80\u5355\uff01"},"content":{"rendered":"


\n
\n<\/title><br \/>\n<meta charset=\"utf-8\"><br \/>\n<meta name=\"viewport\" content=\"width=device-width,initial-scale=1.0,maximum-scale=1.0,user-scalable=0,viewport-fit=cover\"><\/p>\n<style>\n*{margin:0;padding:0}html{-ms-text-size-adjust:100%;-webkit-text-size-adjust:100%;line-height:1.6}img{z-index:999;position:relative;max-width:100%;margin:10px 0;}body{letter-spacing:.034em}h1,h2,h3,h4,h5,h6{font-weight:400;font-size:16px}a{color:#576b95;text-decoration:none;-webkit-tap-highlight-color:rgba(0,0,0,0)}td,th{word-wrap:break-word;padding:5px 10px;border:1px solid #DDD;}table{margin-bottom:10px;border-collapse:collapse;display:table;width:100%!important;}.appmsg_skin_default .rich_media_area_primary{background-color:#fff}.appmsg_skin_default .rich_media_area_primary .weui-loadmore_line .weui-loadmore__tips{background-color:#fff}.rich_media_area_primary{padding:20px 16px 12px;background-color:#fafafa}@media (max-width:375px){.rich_media_area_primary{padding:20px 60px 15px 60px}.rich_media_area_extra{padding:0 60px 21px 60px}}@media (min-width:1024px){.rich_media_area_primary_inner,.rich_media_area_extra_inner,body{max-width:677px;margin-left:auto;margin-right:auto}.rich_media_area_primary{padding-top:32px}}.rich_media{padding:20px;overflow:hidden;}.appmsg_skin_default .rich_media_area_primary{background-color:#fff}.appmsg_skin_default .rich_media_area_primary .weui-loadmore_line .weui-loadmore__tips{background-color:#fff}@media screen and (min-width:1024px){.rich_media_area_primary_inner,.rich_media_area_extra_inner{max-width:677px;margin-left:auto;margin-right:auto}.rich_media_area_primary{padding-top:32px}}.rich_media_content{overflow:hidden;color:#333;font-size:17px;word-wrap:break-word;-webkit-hyphens:auto;-ms-hyphens:auto;hyphens:auto;text-align:justify;position:relative;z-index:0}.rich_media_content *{max-width:100%!important;box-sizing:border-box!important;-webkit-box-sizing:border-box!important;word-wrap:break-word!important}.rich_media_content p{clear:both;min-height:1em}.rich_media_content em{font-style:italic}.rich_media_content fieldset{min-width:0}.rich_media_content .list-paddingleft-1,.rich_media_content .list-paddingleft-2,.rich_media_content .list-paddingleft-3{padding-left:2.2em}.rich_media_content .list-paddingleft-1 .list-paddingleft-2,.rich_media_content .list-paddingleft-2 .list-paddingleft-2,.rich_media_content .list-paddingleft-3 .list-paddingleft-2{padding-left:30px}.rich_media_content .list-paddingleft-1{padding-left:1.2em}.rich_media_content .list-paddingleft-3{padding-left:3.2em}.rich_media_content .code-snippet,.rich_media_content .code-snippet__fix{max-width:1000%!important}.rich_media_content .code-snippet *,.rich_media_content .code-snippet__fix *{max-width:1000%!important}.rich_media_title{font-size:22px;line-height:1.4;margin-bottom:13px;padding-bottom:13px;border-bottom:1px solid #e7e7eb;}@supports(-webkit-overflow-scrolling:touch){.rich_media_title{font-weight:700}}.rich_media_meta{display:inline-block;vertical-align:middle;padding:0 0 10px 0;font-size:15px;-webkit-tap-highlight-color:rgba(0,0,0,0)}.rich_media_meta.icon_appmsg_tag{margin-right:0px}.rich_media_meta.meta_tag_text{margin-right:0}.rich_media_meta_list em{font-style:normal}.rich_media_meta_text{color:#a5a5a5;}p{margin:0;}.msgBox{margin-top:20px;padding-top:20px;padding-left:50px;overflow:hidden;border-top:2px dashed #09a2ff;}.msg{padding-top:7px;clear:both;}.msgBody{float:right;width:100%;margin-left:55px;padding-bottom:15px;border-bottom:1px dashed #e0e0e0;}.userHeadImg{float:left;margin-left:-50px;}.userHeadImg img{width:40px;height:40px;margin-right:10px;border-radius:3px;}.userName{color:#888888;line-height:24px;font-size:14px;margin:5px 0 5px 0;height:24px;}.replyBody,.autherBody{color:#565656;font-size:15px;}.replyIcon{border-left:4px solid #33ab01;margin-right:5px;}.ad{text-decoration:none;color:#d6d4d4;font-size:12px;}.msgBodyReply{padding-top:5px;}.userName span{float:right;color:#afafaf;font-size:14px;}code{text-align:left;font-size:14px;display:block;white-space:pre;display:-webkit-box;display:-webkit-flex;display:flex;position:relative;}.code-snippet__fix{font-size:14px;margin:10px 0;display:block;color:#333;position:relative;background-color:rgba(0,0,0,0.03);border:1px solid #f0f0f0;border-radius:2px;display:-webkit-box;display:-webkit-flex;display:flex;padding-left:25px;line-height:26px}.code-snippet__fix code{text-align:left;font-size:14px;display:block;white-space:pre;display:-webkit-box;display:-webkit-flex;display:flex;position:relative;font-family:Consolas,\"Liberation Mono\",Menlo,Courier,monospace}.code-snippet__comment,.code-snippet__quote{color:#afafaf;font-style:italic}.code-snippet__keyword,.code-snippet__selector-tag,.code-snippet__subst{color:#ca7d37}.code-snippet__number,.code-snippet__literal,.code-snippet__variable,.code-snippet__template-variable,.code-snippet__tag .code-snippet__attr{color:#0e9ce5}.code-snippet__string,.code-snippet__doctag{color:#d14}.code-snippet__title,.code-snippet__section,.code-snippet__selector-id{color:#d14}.code-snippet__subst{font-weight:normal}.code-snippet__type,.code-snippet__class .code-snippet__title{color:#0e9ce5}.code-snippet__tag,.code-snippet__name,.code-snippet__attribute{color:#0e9ce5;font-weight:normal}.code-snippet__regexp,.code-snippet__link{color:#ca7d37}.code-snippet__symbol,.code-snippet__bullet{color:#d14}.code-snippet__built_in,.code-snippet__builtin-name{color:#ca7d37}.code-snippet__meta{color:#afafaf}.code-snippet__deletion{background:#fdd}.code-snippet__addition{background:#dfd}.code-snippet__emphasis{font-style:italic}.code-snippet__strong{font-weight:bold}.account_avatar{width:40px;height:40px;padding:0;}.account_info{display:-webkit-box;display:-webkit-flex;display:flex;-webkit-box-align:center;-webkit-align-items:center;padding:20px 0;align-items:center}.flex_bd{padding-left:14px;}.account_nickname{display:inline-block;vertical-align:middle;line-height:1.2;color:#576b95;font-size:14px}.account_desc{overflow:hidden;text-overflow:ellipsis;display:-webkit-box;-webkit-box-orient:vertical;-webkit-line-clamp:1;color:rgba(0,0,0,0.3);font-size:14px;line-height:1.2;padding-top:.4em}.msg_source_url{text-align:left;word-break:break-all;margin-top:20px;}.msg_source_url a{padding-right:10px;}.msg_source_url .url_text{color:#a8a8a8;}.video-desc{font-size:14px;margin-top:15px;color:#6c6c6c;}.msg_source_url{text-align:left;}.original_primary_card_tips{color:rgba(0,0,0,0.3);line-height:1.4;font-size:15px;}.weui-flex__item{margin-bottom:20px;padding:20px 16px;margin-top:16px;line-height:1.4;align-items:center;background-color:#f7f7f7;border-radius:8px;position:relative;}.original_primary_desc{color:rgba(0,0,0,0.5);font-size:14px;padding-top:4px;width:auto;overflow:hidden;text-overflow:ellipsis;}.msgBodyReplyList{border-top:1px solid #e1e1e1;margin-top:10px;}.msgBodyReplyListTop{border-top:0;}.reply_like_num{float:right;font-size:14px;color:#c7c7c7;}.msgData{margin-top:20px;color:#626262;}.msgData span{font-size:14px;padding-right:15px;}.msgData .likes{float:right;padding-right:0;}.js_text_content p{font-size:18px;}.rich_media_meta_link{font-size:15px;}blockquote {padding-left: 10px;border-left: 3px solid #dbdbdb;color: rgba(0,0,0,0.5);font-size: 15px;padding-top: 4px;margin: 1em 0;}.video_iframe{width:500px;height:400px;}.blockquote_info{color:#b5b5b5;margin-top:10px;}#copyright_logo{color:#bdbdbd;}.rich_media_meta_list{margin-bottom:10px;}.reprint{background:#efefef;border-radius:5px;padding:8px;color:#1f1f1f;}.reprint a{word-break:break-all;}.topic{color:#8e8e8e;background:#f7f7f7;border-radius:5px;padding:10px 8px;}.topic a{padding-right:5px;}.topic p{margin-bottom:5px;}\n<\/style>\n<link href=\"https:\/\/www.juyifx.cn\/config\/css\/wxArticle.css\" rel=\"stylesheet\"\/>\n<\/head><script>\nvar data={\"mp\":\"\u751f\u4fe1\u679c\",\"title\":\"\u86cb\u767d\u8d28\u7ec4\u5b66\u7684\u745e\u58eb\u519b\u5200\uff1ampwR\u8ba9\u5b9e\u9a8c\u5206\u6790\u53d8\u5f97\u5982\u6b64\u7b80\u5355\uff01\",\"time\":\"2023-12-11 19:00:50\",\"timeStamp\":\"1702292450\"};\n<\/script><br \/>\n<body><\/p>\n<div class=\"rich_media\">\n<h1 class=\"rich_media_title\" id=\"activity-name\"><a href=\"http:\/\/mp.weixin.qq.com\/s?__biz=Mzg3OTg3MjQyNg==&mid=2247497335&idx=1&sn=a1e37dd94750ac9b389aedd9ad521a0f&chksm=cf7f66b2f808efa41dbc0c05251796fefc6da78cde6ec4a24a19d6cd2b597e02fbd7c9372f78#rd\" target=\"_blank\" rel=\"noopener\">\u86cb\u767d\u8d28\u7ec4\u5b66\u7684\u745e\u58eb\u519b\u5200\uff1ampwR\u8ba9\u5b9e\u9a8c\u5206\u6790\u53d8\u5f97\u5982\u6b64\u7b80\u5355\uff01<\/a><\/h1>\n<div id=\"meta_content\" class=\"rich_media_meta_list\"><span id=\"copyright_logo\" class=\"wx_tap_link js_wx_tap_highlight rich_media_meta icon_appmsg_tag appmsg_title_tag weui-wa-hotarea\">\u539f\u521b  <\/span><span class=\"rich_media_meta rich_media_meta_text\">\u5c0f\u679c  <\/span><span class=\"rich_media_meta rich_media_meta_nickname\" id=\"profileBt\"><a href=\"javascript:void(0);\" class=\"wx_tap_link js_wx_tap_highlight weui-wa-hotarea\" id=\"js_name\">\u751f\u4fe1\u679c  <\/a><\/span><em id=\"publish_time\" class=\"rich_media_meta rich_media_meta_text\">2023-12-11 19:00:50<\/em><\/div>\n<p><content><\/p>\n<div class=\"topic\">\n<p>\u6536\u5f55\u4e8e\u8bdd\u9898<\/p>\n<p><a href=\"https:\/\/mp.weixin.qq.com\/mp\/appmsgalbum?__biz=Mzg3OTg3MjQyNg==&action=getalbum&album_id=2812010014583390210#wechat_redirect\" title=\"R\u4ee3\u7801\" target=\"_blank\" rel=\"noopener\">#R\u4ee3\u7801<\/a><a href=\"https:\/\/mp.weixin.qq.com\/mp\/appmsgalbum?__biz=Mzg3OTg3MjQyNg==&action=getalbum&album_id=3138206666342268940#wechat_redirect\" title=\"\u751f\u4fe1\u5c0f\u767d\u76f8\u5173\" target=\"_blank\" rel=\"noopener\">#\u751f\u4fe1\u5c0f\u767d\u76f8\u5173<\/a><a href=\"https:\/\/mp.weixin.qq.com\/mp\/appmsgalbum?__biz=Mzg3OTg3MjQyNg==&action=getalbum&album_id=2821072943068839938#wechat_redirect\" title=\"\u751f\u4fe1\u7ed8\u56fe\" target=\"_blank\" rel=\"noopener\">#\u751f\u4fe1\u7ed8\u56fe<\/a><\/p>\n<\/div>\n<p style=\"text-align: center;\" data-mpa-powered-by=\"yiban.io\"><img decoding=\"async\" class=\"rich_pages wxw-img\" data-galleryid=\"\" data-ratio=\"0.2222222222222222\" data-s=\"300,640\" src=\"\u56fe\u7247\/\u751f\u4fe1\u679c_2023-12-11_\u86cb\u767d\u8d28\u7ec4\u5b66\u7684\u745e\u58eb\u519b\u5200\uff1ampwR\u8ba9\u5b9e\u9a8c\u5206\u6790\u53d8\u5f97\u5982\u6b64\u7b80\u5355\uff01\/1_nZ9BoUDAog4hwrgRXhX2CacicblwOw.png\" onerror=\"this.src='https:\/\/mmbiz.qpic.cn\/sz_mmbiz_png\/zcicibWZessAwGdrv57cufRDxNe2qhVbSiczFibH5gcIaRXymelsKjDulrI1xnZ9BoUDAog4hwrgRXhX2CacicblwOw\/640?wx_fmt=png&from=appmsg'\" data-type=\"png\" data-w=\"900\" style=\"\" \/><\/p>\n<p><span style=\"font-size: 15px;letter-spacing: 0.034em;\"><span style=\"font-family: Cambria;font-variant-numeric: normal;font-variant-east-asian: normal;font-variant-alternates: normal;font-variant-position: normal;\">\u5927\u5bb6\u597d\uff0c\u4eca\u5929\u5c0f\u679c\u8981\u7ed9\u5927\u5bb6\u4ecb\u7ecd\u7684\u662f\u4e00\u4e2a<\/span><span style=\"font-family: Cambria;font-variant-numeric: normal;font-variant-east-asian: normal;font-variant-alternates: normal;font-variant-position: normal;font-weight: bold;\">2023\u5e741\u67081\u65e5<\/span><span style=\"font-family: Cambria;font-variant-numeric: normal;font-variant-east-asian: normal;font-variant-alternates: normal;font-variant-position: normal;\">\u53d1\u8868\u5728<\/span><span style=\"font-family: Cambria;font-variant-numeric: normal;font-variant-east-asian: normal;font-variant-alternates: normal;font-variant-position: normal;font-weight: bold;font-style: italic;\">Bioinformatics<\/span><span style=\"font-family: Cambria;font-variant-numeric: normal;font-variant-east-asian: normal;font-variant-alternates: normal;font-variant-position: normal;\">\u671f\u520a\u4e0a\u540d\u4e3ampwR\u7684R\u5305\uff0c\u5b83\u7684\u4e3b\u8981\u76ee\u7684\u662f\u5bf9\u57fa\u4e8e\u8d28\u8c31\uff08MS\uff09\u7684\u86cb\u767d\u8d28\u7ec4\u5b66\u65e0\u6807\u7b7e\u5de5\u4f5c\u6d41\u7a0b\u8fdb\u884c\u6807\u51c6\u5316\u6bd4\u8f83\u3002\u65e0\u8bba\u4f60\u7684\u6570\u636e\u4f9d\u8d56\u6027\u6216\u975e\u6570\u636e\u4f9d\u8d56\u6027\u7684\u5149\u8c31\u83b7\u53d6\u65b9\u5f0f\uff0cmpwR\u90fd\u53ef\u4ee5\u5e2e\u52a9\u4f60\u8f7b\u677e\u6bd4\u8f83\u6837\u672c\u51c6\u5907\u7a0b\u5e8f\u3001\u6db2\u76f8\u8272\u8c31\uff08LC\uff09-MS\u8bbe\u7f6e\u7684\u7ec4\u5408\u4ee5\u53ca\u8f6f\u4ef6\u5185\u548c\u8f6f\u4ef6\u95f4\u7684\u5173\u952e\u6027\u80fd\u6307\u6807\u7684\u5dee\u5f02\u3002\u8fd9\u6b3e\u7528\u6237\u53cb\u597d\u7684\u8bbe\u8ba1\u4f7f\u5f97\u6211\u4eec\u53ef\u4ee5\u65b9\u4fbf\u5730\u6bd4\u8f83\u5404\u79cd\u5206\u6790\u4e2d\u8fd9\u4e9b\u56e0\u7d20\u7684\u5f71\u54cd\uff0c\u800c\u4e14\u53ef\u4ee5\u5bf9\u6bd4\u65e0\u9650\u6570\u91cf\u7684\u5206\u6790\u7ed3\u679c\u3002\u6b64\u5916\uff0cmpwR\u8fd8\u652f\u6301Bottom-up\u86cb\u767d\u8d28\u7ec4\u5b66\u5e38\u7528\u7684\u8f6f\u4ef6\u7684\u8f93\u51fa\uff0c\u5982ProteomeDiscoverer\u3001Spectronautil\u3001MaxQuant\u548cDIA-NN\u7b49\u3002<\/span><\/span><\/p>\n<p><span style=\"color: rgb(171, 25, 66);text-decoration: underline;\"><strong><em><span style=\"font-family:Cambria;\"><span style=\"color: rgb(171, 25, 66);text-decoration: underline;font-size: 15px;letter-spacing: 0.51px;\">\u516c\u4f17\u53f7\u56de\u590d111\u9886\u53d6\u4ee3\u7801\uff0c\u4ee3\u7801\u7f16\u53f7\uff1a231108<\/span><\/span><\/em><\/strong><\/span><span style=\"font-family:Cambria;\"><span style=\"font-size: 15px;letter-spacing: 0.51px;\"><\/span><\/span><\/p>\n<p><span style=\"font-family: Cambria;font-variant: normal;text-transform: none;font-size: 15px;\">\u4e0b\u9762\u5c0f\u679c\u5c31\u8981\u62d4\u51fa\u8fd9\u628a\u5b9d\u5200\uff0c\u770b\u770bmpwR\u7684\u950b\u8292\uff01\u6211\u5c06\u5e26\u9886\u5927\u5bb6\u4e86\u89e3\u5982\u4f55\u4f7f\u7528mpwR\u8fdb\u884c\u6570\u636e\u5bfc\u5165\u548c\u4e0b\u6e38\u5206\u6790\u3002\u6211\u4eec\u5c06\u4f1a\u91cd\u70b9\u4ecb\u7ecd\u5982\u4f55\u6807\u8bb0\u8bc6\u522b\u6570\u91cf\u3001\u6570\u636e\u5b8c\u6574\u6027\u3001\u5b9a\u91cf\u548c\u4fdd\u7559\u65f6\u95f4\u7cbe\u5ea6\u7b49\u7b49\u3002<\/span><span style=\"font-size: 12pt;text-indent: 0pt;letter-spacing: 0.034em;\"><\/span><\/p>\n<p><span style=\"font-family: \u5b8b\u4f53;font-variant: normal;text-transform: none;font-size: 15px;\">\u5b89\u88c5<\/span><span style=\"color: rgb(96, 160, 176);font-family: Consolas;font-style: italic;font-size: 15px;text-align: left;text-indent: 0pt;letter-spacing: 0.034em;\"><\/span><\/p>\n<section class=\"code-snippet__fix code-snippet__js\">\n<ul class=\"code-snippet__line-index code-snippet__js\">\n<li><\/li>\n<li><\/li>\n<\/ul>\n<pre class=\"code-snippet__js\" data-lang=\"cpp\"><code><span class=\"code-snippet_outer\"><span class=\"code-snippet__meta\"># install.packages(<span class=\"code-snippet__meta-string\">\"devtools\"<\/span>) <\/span><\/span><\/code><code><span class=\"code-snippet_outer\">devtools::install_github(<span class=\"code-snippet__string\">\"OKdll\/mpwR\"<\/span>, dependencies =TRUE)<\/span><\/code><\/pre>\n<\/section>\n<p><span style=\"font-family: \u5b8b\u4f53;font-variant: normal;text-transform: none;font-size: 15px;\">\u52a0\u8f7dr\u5305\u548c\u5bfc\u5165\u6570\u636e<\/span><\/p>\n<p><span style=\"font-family: Cambria;font-variant: normal;text-transform: none;font-size: 15px;\">\u9996\u5148\uff0c\u6211\u4eec\u9700\u8981\u52a0\u8f7d\u4e00\u4e9b\u5fc5\u8981\u7684R\u5305\uff1a<\/span><\/p>\n<section class=\"code-snippet__fix code-snippet__js\">\n<ul class=\"code-snippet__line-index code-snippet__js\">\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<\/ul>\n<pre class=\"code-snippet__js\"><code><span class=\"code-snippet_outer\">library(mpwR) <\/span><\/code><code><span class=\"code-snippet_outer\">library(flowTraceR) <\/span><\/code><code><span class=\"code-snippet_outer\">library(magrittr) <\/span><\/code><code><span class=\"code-snippet_outer\">library(dplyr) <\/span><\/code><code><span class=\"code-snippet_outer\">library(tidyr) <\/span><\/code><code><span class=\"code-snippet_outer\">library(stringr) <\/span><\/code><code><span class=\"code-snippet_outer\">library(tibble) <\/span><\/code><code><span class=\"code-snippet_outer\">library(ggplot2) <\/span><\/code><code><span class=\"code-snippet_outer\">library(flextable)<\/span><\/code><\/pre>\n<\/section>\n<p><span style=\"font-size: 15px;\"><span style=\"font-family: Consolas;font-variant: normal;text-transform: none;\"><\/span><\/span><\/p>\n<p><span style=\"font-size: 15px;\"><span style=\"font-family: Cambria;font-variant: normal;text-transform: none;\">\u63a5\u4e0b\u6765\uff0c\u6211\u4eec\u9700\u8981\u5bfc\u5165\u6570\u636e\u3002\u53ef\u4ee5\u4f7f\u7528<\/span>prepare_mpwR<span style=\"font-family: Cambria;font-variant: normal;text-transform: none;\">\u51fd\u6570\u6765\u5b8c\u6210\u8fd9\u4e2a\u4efb\u52a1\u3002\u8bf7\u5c06\u6240\u6709\u8f93\u51fa\u6587\u4ef6\u653e\u5728\u4e00\u4e2a\u6587\u4ef6\u5939\u4e2d\uff0c\u5e76\u6309\u7167\u547d\u540d\u6307\u5357\u5bf9\u6587\u4ef6\u8fdb\u884c\u547d\u540d\u3002\u4e0d\u5141\u8bb8\u4f7f\u7528\u5176\u4ed6\u6587\u4ef6\u6216\u5b50\u6587\u4ef6\u5939\u3002<\/span><\/span><\/p>\n<section class=\"code-snippet__fix code-snippet__js\">\n<ul class=\"code-snippet__line-index code-snippet__js\">\n<li><\/li>\n<\/ul>\n<pre class=\"code-snippet__js\" data-lang=\"nginx\"><code><span class=\"code-snippet_outer\"><span class=\"code-snippet__attribute\">files<\/span> <-prepare_mpwR(path =<span class=\"code-snippet__string\">\"Path_to_Folder_with_files\"<\/span>)<\/span><\/code><\/pre>\n<\/section>\n<p><span style=\"font-size: 15px;\"><span style=\"font-family: Cambria;font-variant: normal;text-transform: none;\">\u4e3a\u4e86\u8ba9\u5927\u5bb6\u66f4\u597d\u5730\u7406\u89e3\u5de5\u4f5c\u6d41\u7a0b\uff0c\u5c0f\u679c\u5c31\u76f4\u63a5\u7528\u793a\u4f8b\u6570\u636e\u6765\u6f14\u793a\u3002\u6211\u4eec\u53ef\u4ee5\u4f7f\u7528<\/span>create_example<span style=\"font-family: Cambria;font-variant: normal;text-transform: none;\">\u51fd\u6570\u6765\u521b\u5efa\u793a\u4f8b\u6587\u4ef6\uff1a<\/span><\/span><\/p>\n<section class=\"code-snippet__fix code-snippet__js\">\n<ul class=\"code-snippet__line-index code-snippet__js\">\n<li><\/li>\n<\/ul>\n<pre class=\"code-snippet__js\" data-lang=\"nginx\"><code><span class=\"code-snippet_outer\"><span class=\"code-snippet__attribute\">files<\/span> <-create_example()<\/span><\/code><\/pre>\n<\/section>\n<p><span style=\"font-family: Cambria;font-variant: normal;text-transform: none;font-size: 15px;\">\u901a\u8fc7\u4ee5\u4e0a\u6b65\u9aa4\uff0c\u6211\u4eec\u5c31\u53ef\u4ee5\u4f7f\u7528mpwR\u5b8c\u6210\u6570\u636e\u5bfc\u5165\u4e86\u3002<\/span><\/p>\n<section class=\"code-snippet__fix code-snippet__js\">\n<ul class=\"code-snippet__line-index code-snippet__js\">\n<li><\/li>\n<\/ul>\n<pre class=\"code-snippet__js\"><code><span class=\"code-snippet_outer\">Identifications\u6570\u91cf<\/span><\/code><\/pre>\n<\/section>\n<p><span style=\"font-size: 15px;\"><span style=\"font-family: Cambria;font-variant: normal;text-transform: none;\">\u5982\u4f55\u786e\u5b9a\u8bc6\u522b\u6570\u91cf\uff1f\u53ef\u4ee5\u4f7f\u7528<\/span>get_ID_Report<span style=\"font-family: Cambria;font-variant: normal;text-transform: none;\">\u51fd\u6570\u6765\u5b8c\u6210\u8fd9\u4e2a\u4efb\u52a1\u3002<\/span><\/span><\/p>\n<p><span style=\"font-size: 15px;\"><span style=\"font-family: Cambria;font-variant: normal;text-transform: none;\"><img decoding=\"async\" class=\"rich_pages wxw-img\" data-galleryid=\"\" data-imgfileid=\"100012854\" data-ratio=\"0.38981481481481484\" data-s=\"300,640\" src=\"\u56fe\u7247\/\u751f\u4fe1\u679c_2023-12-11_\u86cb\u767d\u8d28\u7ec4\u5b66\u7684\u745e\u58eb\u519b\u5200\uff1ampwR\u8ba9\u5b9e\u9a8c\u5206\u6790\u53d8\u5f97\u5982\u6b64\u7b80\u5355\uff01\/2_IWicymEetCc6Enf2BkUE4Yz1Ya5e5w.png\" onerror=\"this.src='https:\/\/mmbiz.qpic.cn\/sz_mmbiz_png\/zcicibWZessAyuYsqlJnQUJvnS2iciaDibtfbdV0VmHlriaSjYwjFPLp1BLjokHIWicymEetCc6Enf2BkUE4Yz1Ya5e5w\/640?wx_fmt=png'\" data-type=\"png\" data-w=\"1080\" style=\"font-size: 15px;letter-spacing: 0.578px;text-wrap: wrap;font-family: "Helvetica Neue", Helvetica, "Hiragino Sans GB", "Microsoft YaHei", Arial, sans-serif;text-align: center;\" \/><\/span><\/span><\/p>\n<section class=\"code-snippet__fix code-snippet__js\">\n<ul class=\"code-snippet__line-index code-snippet__js\">\n<li><\/li>\n<\/ul>\n<pre class=\"code-snippet__js\" data-lang=\"xml\"><code><span class=\"code-snippet_outer\">ID_Reports <span class=\"code-snippet__tag\"><<span class=\"code-snippet__name\">-get_ID_Report(input_list<\/span> = <span class=\"code-snippet__string\">files)<\/span><\/span><\/span><\/code><\/pre>\n<\/section>\n<p><span style=\"font-family: Cambria;font-variant: normal;text-transform: none;font-size: 15px;\">\u8fd9\u4e2a\u51fd\u6570\u4f1a\u4e3a\u6bcf\u4e2a\u5206\u6790\u751f\u6210\u4e00\u4e2aID Report\uff0c\u5e76\u5c06\u5176\u5b58\u50a8\u5728\u4e00\u4e2a\u5217\u8868\u4e2d\u3002\u73b0\u5728\uff0c\u8ba9\u6211\u4eec\u6765\u770b\u4e00\u4e0b\u5982\u4f55\u8f7b\u677e\u8bbf\u95ee\u62a5\u544a\u4e2d\u7684\u6570\u636e\u3002\u5047\u8bbe\u6211\u4eec\u8981\u67e5\u770bDIA-NN\u7684\u62a5\u544a\uff1a<\/span><\/p>\n<section class=\"code-snippet__fix code-snippet__js\">\n<ul class=\"code-snippet__line-index code-snippet__js\">\n<li><\/li>\n<\/ul>\n<pre class=\"code-snippet__js\" data-lang=\"cpp\"><code><span class=\"code-snippet_outer\">flextable::flextable(ID_Reports[[<span class=\"code-snippet__string\">\"DIA-NN\"<\/span>]])<\/span><\/code><\/pre>\n<\/section>\n<p><span style=\"font-family: Cambria;font-variant: normal;text-transform: none;font-size: 15px;\"><img decoding=\"async\" loading=\"lazy\" class=\"rich_pages wxw-img\" data-imgfileid=\"100012691\" data-ratio=\"0.19814814814814816\" src=\"\u56fe\u7247\/\u751f\u4fe1\u679c_2023-12-11_\u86cb\u767d\u8d28\u7ec4\u5b66\u7684\u745e\u58eb\u519b\u5200\uff1ampwR\u8ba9\u5b9e\u9a8c\u5206\u6790\u53d8\u5f97\u5982\u6b64\u7b80\u5355\uff01\/3_XOT7owm7Hm7iciaHf68PJEibmItIhw.png\" onerror=\"this.src='https:\/\/mmbiz.qpic.cn\/sz_mmbiz_png\/zcicibWZessAyv5Zt69WdcXZibRz9fKGian3lG1Dx0eia4HuMxV9iamNCibGDZ0NuibXOT7owm7Hm7iciaHf68PJEibmItIhw\/640?wx_fmt=png'\" data-type=\"png\" data-w=\"1080\" height=\"110.98001098632812\" width=\"560.010009765625\" \/><\/span><\/p>\n<p><span style=\"font-family: Cambria;font-variant: normal;text-transform: none;font-size: 15px;\">\u63a5\u7740\u6211\u4eec\u770b\u770b\u5982\u4f55\u751f\u6210\u6761\u5f62\u56fe\u3002\u53ef\u4ee5\u4f7f\u7528plot_ID_barplot\u51fd\u6570\u6765\u5b8c\u6210\u8fd9\u4e2a\u4efb\u52a1\u3002<\/span><\/p>\n<section class=\"code-snippet__fix code-snippet__js\">\n<ul class=\"code-snippet__line-index code-snippet__js\">\n<li><\/li>\n<\/ul>\n<pre class=\"code-snippet__js\" data-lang=\"xml\"><code><span class=\"code-snippet_outer\">ID_Barplots <span class=\"code-snippet__tag\"><<span class=\"code-snippet__name\">-plot_ID_barplot(input_list<\/span> = <span class=\"code-snippet__string\">ID_Reports,<\/span> <span class=\"code-snippet__attr\">level<\/span> =<span class=\"code-snippet__string\">\"ProteinGroup.IDs\"<\/span>)<\/span><\/span><\/code><\/pre>\n<\/section>\n<p><span style=\"font-family: Cambria;font-variant: normal;text-transform: none;font-size: 15px;\">\u8fd9\u4e2a\u51fd\u6570\u4f1a\u6839\u636e\u8f93\u5165\u7684\u62a5\u544a\u5217\u8868\uff08ID_Reports\uff09\u548c\u5c42\u7ea7\uff08”ProteinGroup.IDs”\uff09\u751f\u6210\u6761\u5f62\u56fe\uff0c\u5e76\u5c06\u5b83\u4eec\u5b58\u50a8\u5728\u4e00\u4e2a\u5217\u8868\u4e2d\u3002\u73b0\u5728\uff0c\u8ba9\u6211\u4eec\u6765\u770b\u4e00\u4e0b\u5982\u4f55\u8f7b\u677e\u8bbf\u95ee\u5355\u4e2a\u6761\u5f62\u56fe\u3002\u5047\u8bbe\u6211\u4eec\u8981\u67e5\u770bDIA-NN\u7684\u6761\u5f62\u56fe\uff1a<\/span><\/p>\n<section class=\"code-snippet__fix code-snippet__js\">\n<ul class=\"code-snippet__line-index code-snippet__js\">\n<li><\/li>\n<\/ul>\n<pre class=\"code-snippet__js\" data-lang=\"javascript\"><code><span class=\"code-snippet_outer\">ID_Barplots[[<span class=\"code-snippet__string\">\"DIA-NN\"<\/span>]]<\/span><\/code><\/pre>\n<\/section>\n<p><span style=\"font-family: Cambria;font-variant: normal;text-transform: none;font-size: 15px;\"><img decoding=\"async\" loading=\"lazy\" class=\"rich_pages wxw-img\" data-imgfileid=\"100012688\" data-ratio=\"0.6175925925925926\" src=\"\u56fe\u7247\/\u751f\u4fe1\u679c_2023-12-11_\u86cb\u767d\u8d28\u7ec4\u5b66\u7684\u745e\u58eb\u519b\u5200\uff1ampwR\u8ba9\u5b9e\u9a8c\u5206\u6790\u53d8\u5f97\u5982\u6b64\u7b80\u5355\uff01\/4_dfGBJodlJkW0an1N5tGc8bBz1zXU3w.png\" onerror=\"this.src='https:\/\/mmbiz.qpic.cn\/sz_mmbiz_png\/zcicibWZessAyv5Zt69WdcXZibRz9fKGian3B34zWjuKS0o16OIKZ83JjJ6pdfGBJodlJkW0an1N5tGc8bBz1zXU3w\/640?wx_fmt=png'\" data-type=\"png\" data-w=\"1080\" height=\"346.010009765625\" width=\"560.010009765625\" \/><\/span><\/p>\n<p><span style=\"font-family: Cambria;font-variant: normal;text-transform: none;font-size: 15px;\">\u6211\u4eec\u8fd8\u53ef\u4ee5\u753b\u51fa\u7bb1\u7ebf\u56fe\u8fdb\u884c\u603b\u7ed3\u3002<\/span><span style=\"color: rgb(6, 40, 126);font-family: Consolas;font-size: 15px;text-indent: 0pt;letter-spacing: 0.034em;\"><\/span><\/p>\n<section class=\"code-snippet__fix code-snippet__js\">\n<ul class=\"code-snippet__line-index code-snippet__js\">\n<li><\/li>\n<\/ul>\n<pre class=\"code-snippet__js\" data-lang=\"javascript\"><code><span class=\"code-snippet_outer\">plot_ID_boxplot(input_list = ID_Reports, level =<span class=\"code-snippet__string\">\"ProteinGroup.IDs\"<\/span>)<\/span><\/code><\/pre>\n<\/section>\n<p><span style=\"font-family: Cambria;font-variant: normal;text-transform: none;font-size: 15px;\"><img decoding=\"async\" loading=\"lazy\" class=\"rich_pages wxw-img\" data-imgfileid=\"100012689\" data-ratio=\"0.6175925925925926\" src=\"\u56fe\u7247\/\u751f\u4fe1\u679c_2023-12-11_\u86cb\u767d\u8d28\u7ec4\u5b66\u7684\u745e\u58eb\u519b\u5200\uff1ampwR\u8ba9\u5b9e\u9a8c\u5206\u6790\u53d8\u5f97\u5982\u6b64\u7b80\u5355\uff01\/5_hfAuKBWuGPMkugullPxsd7Eib7ZCzw.png\" onerror=\"this.src='https:\/\/mmbiz.qpic.cn\/sz_mmbiz_png\/zcicibWZessAyv5Zt69WdcXZibRz9fKGian3jRUWkFRpXI4PDqBdKWf84xf6HhfAuKBWuGPMkugullPxsd7Eib7ZCzw\/640?wx_fmt=png'\" data-type=\"png\" data-w=\"1080\" height=\"346.010009765625\" width=\"560.010009765625\" \/><\/span><span style=\"font-size: 15px;\">    <\/span><o:page><\/o:page><\/p>\n<p><span style=\"font-family: \u5b8b\u4f53;font-variant: normal;text-transform: none;font-size: 15px;\">\u6570\u636e\u5b8c\u6574\u6027<\/span><\/p>\n<p><span style=\"font-family: \u5b8b\u4f53;font-variant: normal;text-transform: none;font-size: 15px;\">\u62a5\u544a<\/span><\/p>\n<p><span style=\"font-size: 15px;\"><span style=\"font-family: Cambria;font-variant: normal;text-transform: none;\">\u9996\u5148\uff0c\u8ba9\u6211\u4eec\u6765\u4e86\u89e3\u4e00\u4e0b\u5982\u4f55\u751f\u6210\u6570\u636e\u5b8c\u6574\u6027\u62a5\u544a\u3002\u53ef\u4ee5\u4f7f\u7528<\/span>get_DC_Report<span style=\"font-family: Cambria;font-variant: normal;text-transform: none;\">\u51fd\u6570\u6765\u5b8c\u6210\u8fd9\u4e2a\u4efb\u52a1\u3002<\/span><\/span><\/p>\n<section class=\"code-snippet__fix code-snippet__js\">\n<ul class=\"code-snippet__line-index code-snippet__js\">\n<li><\/li>\n<li><\/li>\n<\/ul>\n<pre class=\"code-snippet__js\" data-lang=\"nginx\"><code><span class=\"code-snippet_outer\"><span class=\"code-snippet__attribute\">DC_Reports<\/span> <-get_DC_Report(input_list = files, metric =<span class=\"code-snippet__string\">\"absolute\"<\/span>) <\/span><\/code><code><span class=\"code-snippet_outer\">DC_Reports_perc <-get_DC_Report(input_list = files, metric =<span class=\"code-snippet__string\">\"percentage\"<\/span>)<\/span><\/code><\/pre>\n<\/section>\n<p><span style=\"font-family: Cambria;font-variant: normal;text-transform: none;font-size: 15px;\">\u8fd9\u4e2a\u51fd\u6570\u4f1a\u6839\u636e\u8f93\u5165\u7684\u6587\u4ef6\u5217\u8868\uff08files\uff09\u548c\u6307\u6807\uff08metric\uff09\u751f\u6210\u6570\u636e\u5b8c\u6574\u6027\u62a5\u544a\uff0c\u5e76\u5c06\u5b83\u4eec\u5b58\u50a8\u5728\u4e00\u4e2a\u5217\u8868\u4e2d\u3002\u73b0\u5728\uff0c\u8ba9\u6211\u4eec\u6765\u770b\u4e00\u4e0b\u5982\u4f55\u8f7b\u677e\u8bbf\u95ee\u5355\u4e2a\u6570\u636e\u5b8c\u6574\u6027\u62a5\u544a\u3002\u5047\u8bbe\u6211\u4eec\u8981\u67e5\u770bDIA-NN\u7684\u62a5\u544a\uff1a<\/span><\/p>\n<section class=\"code-snippet__fix code-snippet__js\">\n<ul class=\"code-snippet__line-index code-snippet__js\">\n<li><\/li>\n<\/ul>\n<pre class=\"code-snippet__js\" data-lang=\"cpp\"><code><span class=\"code-snippet_outer\">flextable::flextable(DC_Reports[[<span class=\"code-snippet__string\">\"DIA-NN\"<\/span>]]<\/span><\/code><\/pre>\n<\/section>\n<p><span style=\"font-family: Cambria;font-variant: normal;text-transform: none;font-size: 15px;\"><img decoding=\"async\" loading=\"lazy\" class=\"rich_pages wxw-img\" data-imgfileid=\"100012690\" data-ratio=\"0.17314814814814813\" src=\"\u56fe\u7247\/\u751f\u4fe1\u679c_2023-12-11_\u86cb\u767d\u8d28\u7ec4\u5b66\u7684\u745e\u58eb\u519b\u5200\uff1ampwR\u8ba9\u5b9e\u9a8c\u5206\u6790\u53d8\u5f97\u5982\u6b64\u7b80\u5355\uff01\/6_yReY9pQZ6R2SXeGhqNxclekmZrRicA.png\" onerror=\"this.src='https:\/\/mmbiz.qpic.cn\/sz_mmbiz_png\/zcicibWZessAyv5Zt69WdcXZibRz9fKGian3VicJOSSyqqRfic2Iu4d47FlSEaJyReY9pQZ6R2SXeGhqNxclekmZrRicA\/640?wx_fmt=png'\" data-type=\"png\" data-w=\"1080\" height=\"96.82000732421875\" width=\"560.010009765625\" \/><\/span><\/p>\n<p><span style=\"font-family: \u5b8b\u4f53;font-variant: normal;text-transform: none;font-size: 15px;\">\u53ef\u89c6\u5316<\/span><\/p>\n<p><span style=\"font-family: Cambria;font-variant: normal;text-transform: none;font-size: 15px;\">\u9664\u4e86\u67e5\u770b\u62a5\u544a\uff0c\u6211\u4eec\u8fd8\u53ef\u4ee5\u4f7f\u7528mpwR\u751f\u6210\u5404\u79cd\u53ef\u89c6\u5316\u56fe\u8868\u6765\u5c55\u793a\u6570\u636e\u5206\u6790\u7684\u7ed3\u679c\u3002\u53ef\u4ee5\u4f7f\u7528plot_DC_barplot\u51fd\u6570\u6765\u5b8c\u6210\u8fd9\u4e2a\u4efb\u52a1\u3002<\/span><\/p>\n<section class=\"code-snippet__fix code-snippet__js\">\n<ul class=\"code-snippet__line-index code-snippet__js\">\n<li><\/li>\n<\/ul>\n<pre class=\"code-snippet__js\" data-lang=\"xml\"><code><span class=\"code-snippet_outer\">DC_Barplots <span class=\"code-snippet__tag\"><<span class=\"code-snippet__name\">-plot_DC_barplot(input_list<\/span> = <span class=\"code-snippet__string\">DC_Reports,<\/span> <span class=\"code-snippet__attr\">level<\/span> =<span class=\"code-snippet__string\">\"ProteinGroup.IDs\"<\/span>, <span class=\"code-snippet__attr\">label<\/span> =<span class=\"code-snippet__string\">\"absolute\"<\/span>)<\/span><\/span><\/code><\/pre>\n<\/section>\n<p><span style=\"font-family: Cambria;font-variant: normal;text-transform: none;font-size: 15px;\">\u8fd9\u4e2a\u51fd\u6570\u4f1a\u6839\u636e\u8f93\u5165\u7684\u6570\u636e\u5b8c\u6574\u6027\u62a5\u544a\u5217\u8868\uff08DC_Reports\uff09\u548c\u5c42\u7ea7\uff08”ProteinGroup.IDs”\uff09\u751f\u6210\u6761\u5f62\u56fe\uff0c\u5e76\u4ee5\u53ef\u89c6\u5316\u7684\u65b9\u5f0f\u5c55\u793a\u6570\u636e\u5206\u6790\u7684\u7ed3\u679c\u3002<\/span><\/p>\n<p><span style=\"font-family: Cambria;font-variant: normal;text-transform: none;font-size: 15px;\">\u53ef\u4ee5\u901a\u8fc7\u4e0b\u9762\u7684\u4ee3\u7801\u753b\u51fa\u4e2a\u4f53\u7684\u67f1\u72b6\u56fe\u3002<\/span><\/p>\n<section class=\"code-snippet__fix code-snippet__js\">\n<ul class=\"code-snippet__line-index code-snippet__js\">\n<li><\/li>\n<\/ul>\n<pre class=\"code-snippet__js\" data-lang=\"javascript\"><code><span class=\"code-snippet_outer\">DC_Barplots[[<span class=\"code-snippet__string\">\"DIA-NN\"<\/span>]]<\/span><\/code><\/pre>\n<\/section>\n<p><span style=\"font-family: Cambria;font-variant: normal;text-transform: none;font-size: 15px;\"><img decoding=\"async\" loading=\"lazy\" class=\"rich_pages wxw-img\" data-imgfileid=\"100012687\" data-ratio=\"0.6175925925925926\" src=\"\u56fe\u7247\/\u751f\u4fe1\u679c_2023-12-11_\u86cb\u767d\u8d28\u7ec4\u5b66\u7684\u745e\u58eb\u519b\u5200\uff1ampwR\u8ba9\u5b9e\u9a8c\u5206\u6790\u53d8\u5f97\u5982\u6b64\u7b80\u5355\uff01\/7_iaoxCXtICK9WDS2LI6eN7aIfQCB6TQ.png\" onerror=\"this.src='https:\/\/mmbiz.qpic.cn\/sz_mmbiz_png\/zcicibWZessAyv5Zt69WdcXZibRz9fKGian3R16koU8M85iacpYkLntJGKDJQsiaoxCXtICK9WDS2LI6eN7aIfQCB6TQ\/640?wx_fmt=png'\" data-type=\"png\" data-w=\"1080\" height=\"346.010009765625\" width=\"560.010009765625\" \/><\/span><\/p>\n<p><span style=\"font-size: 15px;\"><span style=\"font-family: Cambria;font-variant: normal;text-transform: none;\">\u540c\u6837\u5730\uff0c\u6211\u4eec\u53ef\u4ee5\u4f7f\u7528<\/span>plot_DC_barplot<span style=\"font-family: Cambria;font-variant: normal;text-transform: none;\">\u51fd\u6570\u751f\u6210\u767e\u5206\u6bd4\u5f62\u5f0f\u7684\u6761\u5f62\u56fe\uff1a<\/span><\/span><\/p>\n<section class=\"code-snippet__fix code-snippet__js\">\n<ul class=\"code-snippet__line-index code-snippet__js\">\n<li><\/li>\n<\/ul>\n<pre class=\"code-snippet__js\" data-lang=\"nginx\"><code><span class=\"code-snippet_outer\"><span class=\"code-snippet__attribute\">DC_Barplots<\/span> <-plot_DC_barplot(input_list = DC_Reports_perc, level =<span class=\"code-snippet__string\">\"ProteinGroup.IDs\"<\/span>, label =<span class=\"code-snippet__string\">\"percentage\"<\/span>)[[<span class=\"code-snippet__string\">\"DIA-NN\"<\/span>]]<\/span><\/code><\/pre>\n<\/section>\n<p><span style=\"font-family: Cambria;font-variant: normal;text-transform: none;font-size: 15px;\">\u8fd9\u4e2a\u547d\u4ee4\u4f1a\u6839\u636e\u8f93\u5165\u7684\u6570\u636e\u5b8c\u6574\u6027\u62a5\u544a\u5217\u8868\uff08DC_Reports_perc\uff09\u548c\u5c42\u7ea7\uff08”ProteinGroup.IDs”\uff09\u751f\u6210\u767e\u5206\u6bd4\u5f62\u5f0f\u7684\u6761\u5f62\u56fe\uff0c\u5e76\u53ea\u663e\u793aDIA-NN\u7684\u7ed3\u679c\u3002<\/span><\/p>\n<p><span style=\"font-family: Cambria;font-variant: normal;text-transform: none;font-size: 15px;\"><img decoding=\"async\" loading=\"lazy\" class=\"rich_pages wxw-img\" data-imgfileid=\"100012694\" data-ratio=\"0.6175925925925926\" src=\"\u56fe\u7247\/\u751f\u4fe1\u679c_2023-12-11_\u86cb\u767d\u8d28\u7ec4\u5b66\u7684\u745e\u58eb\u519b\u5200\uff1ampwR\u8ba9\u5b9e\u9a8c\u5206\u6790\u53d8\u5f97\u5982\u6b64\u7b80\u5355\uff01\/8_gSeC0IethIGYmmflEOj0VaxBibmSqA.png\" onerror=\"this.src='https:\/\/mmbiz.qpic.cn\/sz_mmbiz_png\/zcicibWZessAyv5Zt69WdcXZibRz9fKGian38dnNd2oWWcZm0zeOWcDKCHwicWgSeC0IethIGYmmflEOj0VaxBibmSqA\/640?wx_fmt=png'\" data-type=\"png\" data-w=\"1080\" height=\"346.010009765625\" width=\"560.010009765625\" \/><\/span><span style=\"font-size: 15px;\">    <\/span><o:page><\/o:page><\/p>\n<p><span style=\"font-family: \u5b8b\u4f53;font-variant: normal;text-transform: none;font-size: 15px;\">\u6c47\u603b<\/span><\/p>\n<p><span style=\"font-size: 15px;\"><span style=\"font-family: Cambria;font-variant: normal;text-transform: none;\">\u6c47\u603b\u4fe1\u606f\u53ef\u4ee5\u901a\u8fc7<\/span>plot_DC_stacked_barplot<span style=\"font-family: Cambria;font-variant: normal;text-transform: none;\">\u751f\u6210\u5806\u53e0\u67f1\u72b6\u56fe\u3002<\/span><\/span><\/p>\n<p><span style=\"font-family: \u5b8b\u4f53;font-variant: normal;text-transform: none;font-size: 15px;\">\u7edd\u5bf9\u503c<\/span><\/p>\n<section class=\"code-snippet__fix code-snippet__js\">\n<ul class=\"code-snippet__line-index code-snippet__js\">\n<li><\/li>\n<\/ul>\n<pre class=\"code-snippet__js\" data-lang=\"javascript\"><code><span class=\"code-snippet_outer\">plot_DC_stacked_barplot(input_list = DC_Reports, level =<span class=\"code-snippet__string\">\"ProteinGroup.IDs\"<\/span>, label =<span class=\"code-snippet__string\">\"absolute\"<\/span>)<\/span><\/code><\/pre>\n<\/section>\n<p><span style=\"font-family: Cambria;font-variant: normal;text-transform: none;font-size: 15px;\"><img decoding=\"async\" loading=\"lazy\" class=\"rich_pages wxw-img\" data-imgfileid=\"100012697\" data-ratio=\"0.6175925925925926\" src=\"\u56fe\u7247\/\u751f\u4fe1\u679c_2023-12-11_\u86cb\u767d\u8d28\u7ec4\u5b66\u7684\u745e\u58eb\u519b\u5200\uff1ampwR\u8ba9\u5b9e\u9a8c\u5206\u6790\u53d8\u5f97\u5982\u6b64\u7b80\u5355\uff01\/9_CeY13MAcFqGCr1kGZQIUsIqqrUjYdw.png\" onerror=\"this.src='https:\/\/mmbiz.qpic.cn\/sz_mmbiz_png\/zcicibWZessAyv5Zt69WdcXZibRz9fKGian3FRWlKeCR16RicYKK2o4CtShhWCeY13MAcFqGCr1kGZQIUsIqqrUjYdw\/640?wx_fmt=png'\" data-type=\"png\" data-w=\"1080\" height=\"346.0100402832031\" width=\"560.010009765625\" \/><\/span><\/p>\n<p><span style=\"font-family: \u5b8b\u4f53;font-variant: normal;text-transform: none;font-size: 15px;\">\u767e\u5206\u6bd4<\/span><\/p>\n<section class=\"code-snippet__fix code-snippet__js\">\n<ul class=\"code-snippet__line-index code-snippet__js\">\n<li><\/li>\n<\/ul>\n<pre class=\"code-snippet__js\" data-lang=\"javascript\"><code><span class=\"code-snippet_outer\">plot_DC_stacked_barplot(input_list = DC_Reports_perc, level =<span class=\"code-snippet__string\">\"ProteinGroup.IDs\"<\/span>, label =<span class=\"code-snippet__string\">\"percentage\"<\/span>)<\/span><\/code><\/pre>\n<\/section>\n<p><span style=\"font-family: Cambria;font-variant: normal;text-transform: none;font-size: 15px;\"><img decoding=\"async\" loading=\"lazy\" class=\"rich_pages wxw-img\" data-imgfileid=\"100012699\" data-ratio=\"0.6175925925925926\" src=\"\u56fe\u7247\/\u751f\u4fe1\u679c_2023-12-11_\u86cb\u767d\u8d28\u7ec4\u5b66\u7684\u745e\u58eb\u519b\u5200\uff1ampwR\u8ba9\u5b9e\u9a8c\u5206\u6790\u53d8\u5f97\u5982\u6b64\u7b80\u5355\uff01\/10_fvtgk7n1qZRfu4sEkA764GT2HFHmmg.png\" onerror=\"this.src='https:\/\/mmbiz.qpic.cn\/sz_mmbiz_png\/zcicibWZessAyv5Zt69WdcXZibRz9fKGian3Dnxygicw09FLH1pd5ppTAx7zPfvtgk7n1qZRfu4sEkA764GT2HFHmmg\/640?wx_fmt=png'\" data-type=\"png\" data-w=\"1080\" height=\"346.010009765625\" width=\"560.010009765625\" \/><\/span><\/p>\n<p><span style=\"font-family: Calibri;font-variant: normal;text-transform: none;font-size: 15px;\">Missed Cleavages<\/span><\/p>\n<p><span style=\"font-family: \u5b8b\u4f53;font-variant: normal;text-transform: none;font-size: 15px;\">\u62a5\u544a<\/span><\/p>\n<p><span style=\"font-size: 15px;\"><span style=\"font-family: Cambria;font-variant: normal;text-transform: none;\">\u6211\u4eec\u53ef\u4ee5\u7528<\/span>get_MC_Report<span style=\"font-family: Cambria;font-variant: normal;text-transform: none;\"> \u51fd\u6570\u67e5\u770bMissed Cleavages\u7684\u7edd\u5bf9\u503c\u6216\u8005\u767e\u5206\u6bd4\u3002<\/span><\/span><\/p>\n<section class=\"code-snippet__fix code-snippet__js\">\n<ul class=\"code-snippet__line-index code-snippet__js\">\n<li><\/li>\n<li><\/li>\n<\/ul>\n<pre class=\"code-snippet__js\" data-lang=\"nginx\"><code><span class=\"code-snippet_outer\"><span class=\"code-snippet__attribute\">MC_Reports<\/span> <-get_MC_Report(input_list = files, metric =<span class=\"code-snippet__string\">\"absolute\"<\/span>) <\/span><\/code><code><span class=\"code-snippet_outer\">MC_Reports_perc <-get_MC_Report(input_list = files, metric =<span class=\"code-snippet__string\">\"percentage\"<\/span>)<\/span><\/code><\/pre>\n<\/section>\n<p><span style=\"font-family: Cambria;font-variant: normal;text-transform: none;font-size: 15px;\">\u7ed3\u679c\u4f1a\u88ab\u5b58\u50a8\u5728list\u4e2d\uff0c\u6211\u4eec\u53ef\u4ee5\u76f4\u63a5\u6839\u636e\u7d22\u5f15\u67e5\u770b\u3002<\/span><\/p>\n<section class=\"code-snippet__fix code-snippet__js\">\n<ul class=\"code-snippet__line-index code-snippet__js\">\n<li><\/li>\n<\/ul>\n<pre class=\"code-snippet__js\" data-lang=\"cpp\"><code><span class=\"code-snippet_outer\">flextable::flextable(MC_Reports[[<span class=\"code-snippet__string\">\"Spectronaut\"<\/span>]])<\/span><\/code><\/pre>\n<\/section>\n<p><span style=\"font-family: Cambria;font-variant: normal;text-transform: none;font-size: 15px;\"><img decoding=\"async\" loading=\"lazy\" class=\"rich_pages wxw-img\" data-imgfileid=\"100012700\" data-ratio=\"0.5527156549520766\" src=\"\u56fe\u7247\/\u751f\u4fe1\u679c_2023-12-11_\u86cb\u767d\u8d28\u7ec4\u5b66\u7684\u745e\u58eb\u519b\u5200\uff1ampwR\u8ba9\u5b9e\u9a8c\u5206\u6790\u53d8\u5f97\u5982\u6b64\u7b80\u5355\uff01\/11_HX6iarQFTtwmRgPZoJuMHjmSyD3evg.png\" onerror=\"this.src='https:\/\/mmbiz.qpic.cn\/sz_mmbiz_png\/zcicibWZessAyv5Zt69WdcXZibRz9fKGian363ibiaACjQf4Lgf7TlMaiclex6icWHX6iarQFTtwmRgPZoJuMHjmSyD3evg\/640?wx_fmt=png'\" data-type=\"png\" data-w=\"626\" height=\"309.5299987792969\" width=\"560.010009765625\" \/><\/span><\/p>\n<p><span style=\"font-family: \u5b8b\u4f53;font-variant: normal;text-transform: none;font-size: 15px;\">\u53ef\u89c6\u5316<\/span><\/p>\n<p><span style=\"font-family: \u5b8b\u4f53;font-variant: normal;text-transform: none;font-size: 15px;\">\u4e2a\u4f53<\/span><\/p>\n<p><span style=\"font-family: \u5b8b\u4f53;font-variant: normal;text-transform: none;font-size: 15px;\">\u7edd\u5bf9\u503c<\/span><\/p>\n<p><span style=\"font-family: Cambria;font-variant: normal;text-transform: none;font-size: 15px;\">\u6bcf\u4e2aMC\u62a5\u544a\u53ef\u4ee5\u7528plot_MC_barplot\u4ece\u524d\u4f53\u5230\u86cb\u767d\u7ec4\u6c34\u5e73\u7ed8\u5236\u3002\u751f\u6210\u7684\u6761\u5f62\u56fe\u5b58\u50a8\u5728\u4e00\u4e2a\u5217\u8868\u4e2d\u3002<\/span><\/p>\n<section class=\"code-snippet__fix code-snippet__js\">\n<ul class=\"code-snippet__line-index code-snippet__js\">\n<li><\/li>\n<\/ul>\n<pre class=\"code-snippet__js\" data-lang=\"xml\"><code><span class=\"code-snippet_outer\">MC_Barplots <span class=\"code-snippet__tag\"><<span class=\"code-snippet__name\">-plot_MC_barplot(input_list<\/span> = <span class=\"code-snippet__string\">MC_Reports,<\/span> <span class=\"code-snippet__attr\">label<\/span> =<span class=\"code-snippet__string\">\"absolute\"<\/span>)<\/span><\/span><\/code><\/pre>\n<\/section>\n<p><span style=\"font-family: Cambria;font-variant: normal;text-transform: none;font-size: 15px;\">\u63a5\u7740\u4e5f\u662f\u901a\u8fc7\u7d22\u5f15\u6765\u8bbf\u95ee\u3002<\/span><\/p>\n<section class=\"code-snippet__fix code-snippet__js\">\n<ul class=\"code-snippet__line-index code-snippet__js\">\n<li><\/li>\n<\/ul>\n<pre class=\"code-snippet__js\" data-lang=\"javascript\"><code><span class=\"code-snippet_outer\">MC_Barplots[[<span class=\"code-snippet__string\">\"Spectronaut\"<\/span>]]<\/span><\/code><\/pre>\n<\/section>\n<p><span style=\"font-family: Cambria;font-variant: normal;text-transform: none;font-size: 15px;\"><img decoding=\"async\" loading=\"lazy\" class=\"rich_pages wxw-img\" data-imgfileid=\"100012696\" data-ratio=\"0.6175925925925926\" src=\"\u56fe\u7247\/\u751f\u4fe1\u679c_2023-12-11_\u86cb\u767d\u8d28\u7ec4\u5b66\u7684\u745e\u58eb\u519b\u5200\uff1ampwR\u8ba9\u5b9e\u9a8c\u5206\u6790\u53d8\u5f97\u5982\u6b64\u7b80\u5355\uff01\/12_dojMUC6KfkickFicSA8a3kapW3qUFQ.png\" onerror=\"this.src='https:\/\/mmbiz.qpic.cn\/sz_mmbiz_png\/zcicibWZessAyv5Zt69WdcXZibRz9fKGian3tzt9sVrBXzl9FQrGFESOKVAt4NdojMUC6KfkickFicSA8a3kapW3qUFQ\/640?wx_fmt=png'\" data-type=\"png\" data-w=\"1080\" height=\"346.010009765625\" width=\"560.010009765625\" \/><\/span><\/p>\n<p><span style=\"font-family: \u5b8b\u4f53;font-variant: normal;text-transform: none;font-size: 15px;\">\u767e\u5206\u6bd4<\/span><\/p>\n<section class=\"code-snippet__fix code-snippet__js\">\n<ul class=\"code-snippet__line-index code-snippet__js\">\n<li><\/li>\n<\/ul>\n<pre class=\"code-snippet__js\" data-lang=\"javascript\"><code><span class=\"code-snippet_outer\">plot_MC_barplot(input_list = MC_Reports_perc, label =<span class=\"code-snippet__string\">\"percentage\"<\/span>)[[<span class=\"code-snippet__string\">\"Spectronaut\"<\/span>]]<\/span><\/code><\/pre>\n<\/section>\n<p><span style=\"font-family: Cambria;font-variant: normal;text-transform: none;font-size: 15px;\"><img decoding=\"async\" loading=\"lazy\" class=\"rich_pages wxw-img\" data-imgfileid=\"100012706\" data-ratio=\"0.6175925925925926\" src=\"\u56fe\u7247\/\u751f\u4fe1\u679c_2023-12-11_\u86cb\u767d\u8d28\u7ec4\u5b66\u7684\u745e\u58eb\u519b\u5200\uff1ampwR\u8ba9\u5b9e\u9a8c\u5206\u6790\u53d8\u5f97\u5982\u6b64\u7b80\u5355\uff01\/13_JK52MJOX1B5TLxGWBFmrmmGMMnlqJQ.png\" onerror=\"this.src='https:\/\/mmbiz.qpic.cn\/sz_mmbiz_png\/zcicibWZessAyv5Zt69WdcXZibRz9fKGian3fjdUYibMsSVDr3mPCD7gLRc2uJK52MJOX1B5TLxGWBFmrmmGMMnlqJQ\/640?wx_fmt=png'\" data-type=\"png\" data-w=\"1080\" height=\"346.010009765625\" width=\"560.010009765625\" \/><\/span><\/p>\n<p><span style=\"font-family: \u5b8b\u4f53;font-variant: normal;text-transform: none;font-size: 15px;\">\u603b\u7ed3<\/span><\/p>\n<p><span style=\"font-size: 15px;\"><span style=\"font-family: Cambria;font-variant: normal;text-transform: none;\">\u540c\u6837\u662f\u901a\u8fc7\u5806\u53e0\u6761\u5f62\u56fe\u7684\u65b9\u6cd5\u6765\u5448\u73b0\u3002<\/span>    <\/span><o:page><\/o:page><\/p>\n<p><span style=\"font-family: \u5b8b\u4f53;font-variant: normal;text-transform: none;font-size: 15px;\">\u7edd\u5bf9\u503c<\/span><\/p>\n<section class=\"code-snippet__fix code-snippet__js\">\n<ul class=\"code-snippet__line-index code-snippet__js\">\n<li><\/li>\n<\/ul>\n<pre class=\"code-snippet__js\" data-lang=\"javascript\"><code><span class=\"code-snippet_outer\">plot_MC_stacked_barplot(input_list = MC_Reports, label =<span class=\"code-snippet__string\">\"absolute\"<\/span>)<\/span><\/code><\/pre>\n<\/section>\n<p><span style=\"font-family: Cambria;font-variant: normal;text-transform: none;font-size: 15px;\"><img decoding=\"async\" loading=\"lazy\" class=\"rich_pages wxw-img\" data-imgfileid=\"100012707\" data-ratio=\"0.6175925925925926\" src=\"\u56fe\u7247\/\u751f\u4fe1\u679c_2023-12-11_\u86cb\u767d\u8d28\u7ec4\u5b66\u7684\u745e\u58eb\u519b\u5200\uff1ampwR\u8ba9\u5b9e\u9a8c\u5206\u6790\u53d8\u5f97\u5982\u6b64\u7b80\u5355\uff01\/14_iamviaV43gUuOpjW3k64E7bDNyibjg.png\" onerror=\"this.src='https:\/\/mmbiz.qpic.cn\/sz_mmbiz_png\/zcicibWZessAyv5Zt69WdcXZibRz9fKGian3FAZ6YwoyibYkpR86Bmic3KMxAe2dPiamviaV43gUuOpjW3k64E7bDNyibjg\/640?wx_fmt=png'\" data-type=\"png\" data-w=\"1080\" height=\"346.010009765625\" width=\"560.010009765625\" \/><\/span><\/p>\n<p><span style=\"font-family: \u5b8b\u4f53;font-variant: normal;text-transform: none;font-size: 15px;\">\u767e\u5206\u6bd4<\/span><\/p>\n<section class=\"code-snippet__fix code-snippet__js\">\n<ul class=\"code-snippet__line-index code-snippet__js\">\n<li><\/li>\n<\/ul>\n<pre class=\"code-snippet__js\" data-lang=\"javascript\"><code><span class=\"code-snippet_outer\">plot_MC_stacked_barplot(input_list = MC_Reports_perc, label =<span class=\"code-snippet__string\">\"percentage\"<\/span>)<\/span><\/code><\/pre>\n<\/section>\n<p><span style=\"font-family: Cambria;font-variant: normal;text-transform: none;font-size: 15px;\"><img decoding=\"async\" loading=\"lazy\" class=\"rich_pages wxw-img\" data-imgfileid=\"100012709\" data-ratio=\"0.6175925925925926\" src=\"\u56fe\u7247\/\u751f\u4fe1\u679c_2023-12-11_\u86cb\u767d\u8d28\u7ec4\u5b66\u7684\u745e\u58eb\u519b\u5200\uff1ampwR\u8ba9\u5b9e\u9a8c\u5206\u6790\u53d8\u5f97\u5982\u6b64\u7b80\u5355\uff01\/15_LIZ2P9A6Nyxs9qY5y3R1qnSd99OJfg.png\" onerror=\"this.src='https:\/\/mmbiz.qpic.cn\/sz_mmbiz_png\/zcicibWZessAyv5Zt69WdcXZibRz9fKGian36jkCMRrAEBd7MBUHcMXIvFfpLIZ2P9A6Nyxs9qY5y3R1qnSd99OJfg\/640?wx_fmt=png'\" data-type=\"png\" data-w=\"1080\" height=\"346.010009765625\" width=\"560.010009765625\" \/><\/span><span style=\"font-size: 15px;\">    <\/span><o:page><\/o:page><\/p>\n<p><span style=\"font-family: \u5b8b\u4f53;font-variant: normal;text-transform: none;font-size: 15px;\">\u4fdd\u6301\u65f6\u95f4\u7cbe\u5ea6<\/span><\/p>\n<p><span style=\"font-family: \u5b8b\u4f53;font-variant: normal;text-transform: none;font-size: 15px;\">\u51c6\u5907<\/span><\/p>\n<p><span style=\"font-size: 15px;\"><span style=\"font-family: Cambria;font-variant: normal;text-transform: none;\">\u53d8\u5f02\u7cfb\u6570(CV)\u53ef\u4ee5\u901a\u8fc7<\/span>get_CV_RT<span style=\"font-family: Cambria;font-variant: normal;text-transform: none;\">\u8ba1\u7b97\u3002<\/span><\/span><span style=\"font-family: Consolas;font-size: 15px;text-align: left;text-indent: 0pt;letter-spacing: 0.034em;caret-color: transparent;\"><\/span><\/p>\n<section class=\"code-snippet__fix code-snippet__js\">\n<ul class=\"code-snippet__line-index code-snippet__js\">\n<li><\/li>\n<\/ul>\n<pre class=\"code-snippet__js\" data-lang=\"xml\"><code><span class=\"code-snippet_outer\">CV_RT <span class=\"code-snippet__tag\"><<span class=\"code-snippet__name\">-get_CV_RT(input_list<\/span> = <span class=\"code-snippet__string\">files)<\/span><\/span><\/span><\/code><\/pre>\n<\/section>\n<p><br \/><\/p>\n<p><span style=\"font-family: \u5b8b\u4f53;font-variant: normal;text-transform: none;font-size: 15px;\">\u53ef\u89c6\u5316<\/span><\/p>\n<section class=\"code-snippet__fix code-snippet__js\">\n<ul class=\"code-snippet__line-index code-snippet__js\">\n<li><\/li>\n<\/ul>\n<pre class=\"code-snippet__js\" data-lang=\"javascript\"><code><span class=\"code-snippet_outer\">plot_CV_density(input_list = CV_RT, cv_col =<span class=\"code-snippet__string\">\"RT\"<\/span>)<\/span><\/code><\/pre>\n<\/section>\n<p><span style=\"font-family: Cambria;font-variant: normal;text-transform: none;font-size: 15px;\"><img decoding=\"async\" loading=\"lazy\" class=\"rich_pages wxw-img\" data-imgfileid=\"100012710\" data-ratio=\"0.6175925925925926\" src=\"\u56fe\u7247\/\u751f\u4fe1\u679c_2023-12-11_\u86cb\u767d\u8d28\u7ec4\u5b66\u7684\u745e\u58eb\u519b\u5200\uff1ampwR\u8ba9\u5b9e\u9a8c\u5206\u6790\u53d8\u5f97\u5982\u6b64\u7b80\u5355\uff01\/16_14rmHib6uAfWYO2wWBXx1KqxIESm5w.png\" onerror=\"this.src='https:\/\/mmbiz.qpic.cn\/sz_mmbiz_png\/zcicibWZessAyv5Zt69WdcXZibRz9fKGian3S4xjQDl4SLsjbJOVDjwpoDu9X14rmHib6uAfWYO2wWBXx1KqxIESm5w\/640?wx_fmt=png'\" data-type=\"png\" data-w=\"1080\" height=\"346.0100402832031\" width=\"560.010009765625\" \/><\/span><\/p>\n<p><span style=\"font-family: \u5b8b\u4f53;font-variant: normal;text-transform: none;font-size: 15px;\">\u5b9a\u91cf\u7cbe\u5ea6<\/span><\/p>\n<p><span style=\"font-family: \u5b8b\u4f53;font-variant: normal;text-transform: none;font-size: 15px;\">\u80bd\u6c34\u5e73<\/span><\/p>\n<p><span style=\"font-family: \u5b8b\u4f53;font-variant: normal;text-transform: none;font-size: 15px;\">\u51c6\u5907<\/span><\/p>\n<section class=\"code-snippet__fix code-snippet__js\">\n<ul class=\"code-snippet__line-index code-snippet__js\">\n<li><\/li>\n<\/ul>\n<pre class=\"code-snippet__js\" data-lang=\"xml\"><code><span class=\"code-snippet_outer\">CV_LFQ_Pep <span class=\"code-snippet__tag\"><<span class=\"code-snippet__name\">-get_CV_LFQ_pep(input_list<\/span> = <span class=\"code-snippet__string\">files)<\/span><\/span><\/span><\/code><\/pre>\n<\/section>\n<p><span style=\"font-family: \u5b8b\u4f53;font-variant: normal;text-transform: none;font-size: 15px;\">\u53ef\u89c6\u5316<\/span><\/p>\n<section class=\"code-snippet__fix code-snippet__js\">\n<ul class=\"code-snippet__line-index code-snippet__js\">\n<li><\/li>\n<\/ul>\n<pre class=\"code-snippet__js\" data-lang=\"javascript\"><code><span class=\"code-snippet_outer\">plot_CV_density(input_list = CV_LFQ_Pep, cv_col =<span class=\"code-snippet__string\">\"Pep_quant\"<\/span>)<\/span><\/code><\/pre>\n<\/section>\n<p><o:page><\/o:page><\/p>\n<p><span style=\"font-family: Cambria;font-variant: normal;text-transform: none;font-size: 15px;\"><img decoding=\"async\" loading=\"lazy\" class=\"rich_pages wxw-img\" data-imgfileid=\"100012708\" data-ratio=\"0.6175925925925926\" src=\"\u56fe\u7247\/\u751f\u4fe1\u679c_2023-12-11_\u86cb\u767d\u8d28\u7ec4\u5b66\u7684\u745e\u58eb\u519b\u5200\uff1ampwR\u8ba9\u5b9e\u9a8c\u5206\u6790\u53d8\u5f97\u5982\u6b64\u7b80\u5355\uff01\/17_ah3yWhU26CoL4iboRmpKM0rVcYU5KA.png\" onerror=\"this.src='https:\/\/mmbiz.qpic.cn\/sz_mmbiz_png\/zcicibWZessAyv5Zt69WdcXZibRz9fKGian3xKMrpTxSeLFQBr5GMOOaiaPibMUiah3yWhU26CoL4iboRmpKM0rVcYU5KA\/640?wx_fmt=png'\" data-type=\"png\" data-w=\"1080\" height=\"346.010009765625\" width=\"560.010009765625\" \/><\/span><\/p>\n<section class=\"code-snippet__fix code-snippet__js\">\n<ul class=\"code-snippet__line-index code-snippet__js\">\n<li><\/li>\n<\/ul>\n<pre class=\"code-snippet__js\"><code><span class=\"code-snippet_outer\">Proteingroup-level<\/span><\/code><\/pre>\n<\/section>\n<p><span style=\"font-family: \u5b8b\u4f53;font-variant: normal;text-transform: none;font-size: 15px;\">\u51c6\u5907<\/span><\/p>\n<section class=\"code-snippet__fix code-snippet__js\">\n<ul class=\"code-snippet__line-index code-snippet__js\">\n<li><\/li>\n<\/ul>\n<pre class=\"code-snippet__js\" data-lang=\"xml\"><code><span class=\"code-snippet_outer\">CV_LFQ_PG <span class=\"code-snippet__tag\"><<span class=\"code-snippet__name\">-get_CV_LFQ_pg(input_list<\/span> = <span class=\"code-snippet__string\">files)<\/span><\/span><\/span><\/code><\/pre>\n<\/section>\n<p><span style=\"font-family: \u5b8b\u4f53;font-variant: normal;text-transform: none;font-size: 15px;\">\u53ef\u89c6\u5316<\/span><\/p>\n<section class=\"code-snippet__fix code-snippet__js\">\n<ul class=\"code-snippet__line-index code-snippet__js\">\n<li><\/li>\n<\/ul>\n<pre class=\"code-snippet__js\" data-lang=\"javascript\"><code><span class=\"code-snippet_outer\">plot_CV_density(input_list = CV_LFQ_PG, cv_col =<span class=\"code-snippet__string\">\"PG_quant\"<\/span>)<\/span><\/code><\/pre>\n<\/section>\n<p><span style=\"font-size: 15px;\"><span style=\"font-family: Consolas;font-variant: normal;text-transform: none;\"><\/span><\/span><\/p>\n<p><span style=\"font-family: Cambria;font-variant: normal;text-transform: none;font-size: 15px;\"><img decoding=\"async\" loading=\"lazy\" class=\"rich_pages wxw-img\" data-imgfileid=\"100012719\" data-ratio=\"0.6175925925925926\" src=\"https:\/\/i0.wp.com\/www.biocloudservice.com\/wordpress\/wp-content\/uploads\/2024\/06\/18_O83tELzMicjI7PRRDXDL984u2hWMZA.png?resize=560%2C346\" onerror=\"this.src='https:\/\/mmbiz.qpic.cn\/sz_mmbiz_png\/zcicibWZessAyv5Zt69WdcXZibRz9fKGian37ra6aVSlHfIZg6KgjqCIOZxRTO83tELzMicjI7PRRDXDL984u2hWMZA\/640?wx_fmt=png'\" data-type=\"png\" data-w=\"1080\" height=\"346 .010009765625\" width=\"560 .010009765625\" data-recalc-dims=\"1\" \/><\/span><span style=\"font-size: 15px;\">   <\/span><o:page><\/o:page><\/p>\n<section class=\"code-snippet__fix code-snippet__js\">\n<ul class=\"code-snippet__line-index code-snippet__js\">\n<li><\/li>\n<\/ul>\n<pre class=\"code-snippet__js\" data-lang=\"nginx\"><code><span class=\"code-snippet_outer\"><span class=\"code-snippet__attribute\">Upset<\/span> Plot<\/span><\/code><\/pre>\n<\/section>\n<p><span style=\"font-family: \u5b8b\u4f53;font-variant: normal;text-transform: none;font-size: 15px;\">\u51c6\u5907<\/span><\/p>\n<section class=\"code-snippet__fix code-snippet__js\">\n<ul class=\"code-snippet__line-index code-snippet__js\">\n<li><\/li>\n<\/ul>\n<pre class=\"code-snippet__js\" data-lang=\"xml\"><code><span class=\"code-snippet_outer\">Upset_prepared <span class=\"code-snippet__tag\"><<span class=\"code-snippet__name\">-get_Upset_list(input_list<\/span> = <span class=\"code-snippet__string\">files,<\/span> <span class=\"code-snippet__attr\">level<\/span> =<span class=\"code-snippet__string\">\"ProteinGroup.IDs\"<\/span>)<\/span><\/span><\/code><\/pre>\n<\/section>\n<p><span style=\"font-size: 15px;\"><span style=\"font-family: Consolas;font-variant: normal;text-transform: none;\"><\/span><\/span><\/p>\n<p><span style=\"font-family: \u5b8b\u4f53;font-variant: normal;text-transform: none;font-size: 15px;\">\u53ef\u89c6\u5316<\/span><span style=\"color: rgb(6, 40, 126);font-family: Consolas;font-size: 15px;text-align: left;text-indent: 0pt;letter-spacing: 0.034em;\"><\/span><\/p>\n<section class=\"code-snippet__fix code-snippet__js\">\n<ul class=\"code-snippet__line-index code-snippet__js\">\n<li><\/li>\n<\/ul>\n<pre class=\"code-snippet__js\" data-lang=\"javascript\"><code><span class=\"code-snippet_outer\">plot_Upset(input_list = Upset_prepared, label =<span class=\"code-snippet__string\">\"ProteinGroup.IDs\"<\/span>)<\/span><\/code><\/pre>\n<\/section>\n<p><span style=\"font-size: 15px;\"><span style=\"font-family: Consolas;font-variant: normal;text-transform: none;\"><\/span><\/span><\/p>\n<p><span style=\"font-family: Cambria;font-variant: normal;text-transform: none;font-size: 15px;\"><img decoding=\"async\" loading=\"lazy\" class=\"rich_pages wxw-img\" data-imgfileid=\"100012718\" data-ratio=\"0.6175925925925926\" src=\"\u56fe\u7247\/\u751f\u4fe1\u679c_2023-12-11_\u86cb\u767d\u8d28\u7ec4\u5b66\u7684\u745e\u58eb\u519b\u5200\uff1ampwR\u8ba9\u5b9e\u9a8c\u5206\u6790\u53d8\u5f97\u5982\u6b64\u7b80\u5355\uff01\/19_Nyd1MKzBm4ZpGribJ7Do6Fm95hicJA.png\" onerror=\"this.src='https:\/\/mmbiz.qpic.cn\/sz_mmbiz_png\/zcicibWZessAyv5Zt69WdcXZibRz9fKGian3VRdWn4XmPaV1xKicUGnXfPC8jIDNyd1MKzBm4ZpGribJ7Do6Fm95hicJA\/640?wx_fmt=png'\" data-type=\"png\" data-w=\"1080\" height=\"346.0100402832031\" width=\"560.010009765625\" \/><\/span><\/p>\n<p><span style=\"font-family: \u5b8b\u4f53;font-variant: normal;text-transform: none;font-size: 15px;\">\u603b\u7ed3<\/span><\/p>\n<p><span style=\"font-family: Cambria;font-variant: normal;text-transform: none;font-size: 15px;\">mpwR\u63d0\u4f9b\u4e86\u4e00\u4e2a\u7cfb\u7edf\u7684\u65b9\u6cd5\u6765\u6bd4\u8f83\u86cb\u767d\u8d28\u7ec4\u5de5\u4f5c\u6d41\u7a0b\uff0c\u5e76\u4f7f\u7814\u7a76\u4eba\u5458\u80fd\u591f\u83b7\u53d6\u6709\u5173\u9274\u5b9a\u3001\u6570\u636e\u5b8c\u6574\u6027\u3001\u5b9a\u91cf\u7cbe\u786e\u6027\u548c\u5176\u4ed6\u6027\u80fd\u6307\u6807\u3002\u5927\u5bb6\u4e4b\u540e\u8fdb\u884c\u86cb\u767d\u8d28\u7ec4\u76f8\u5173\u7684\u7814\u7a76\u65f6\u4e0d\u8981\u5fd8\u8bb0\u4e86mpwR\u8fd9\u628a\u745e\u58eb\u519b\u5200\u54e6\uff01<\/span><\/p>\n<p><span style=\"font-family: \u5b8b\u4f53;font-variant: normal;text-transform: none;font-size: 15px;\">\u53c2\u8003\u6587\u732e<\/span><\/p>\n<p><span style=\"font-family: Cambria;font-variant: normal;text-transform: none;font-size: 15px;\">[1] Kardell O, Breimann S, Hauck SM. mpwR: an R package for comparing performance of mass spectrometry-based proteomic workflows. Bioinformatics. 2023 Jun 1;39(6):btad358. doi: 10.1093\/bioinformatics\/btad358. PMID: 37267150; PMCID: PMC10265443.<\/span><\/p>\n<p><span style=\"font-family: Cambria;font-variant: normal;text-transform: none;font-size: 15px;\">[2] <\/span><span style=\"font-family: Cambria;font-variant: normal;text-transform: none;text-decoration: none;font-size: 15px;\">https:\/\/okdll.github.io\/mpwR\/articles\/Workflow.html<\/span><\/p>\n<section powered-by=\"xiumi.us\" style=\"margin-bottom: 0px;\">\n<section>\n<section powered-by=\"xiumi.us\">\n<section>\n<section powered-by=\"xiumi.us\">\n<section>\n<section powered-by=\"xiumi.us\">\n<section>\n<section>\n<p style=\"text-align: center;\"><a target=\"_blank\" href=\"http:\/\/mp.weixin.qq.com\/s?__biz=Mzg3OTg3MjQyNg==&mid=2247496554&idx=2&sn=e9bce5306709facbe58419cfd0a970e5&chksm=cf7f63aff808eab9333eb868d90020ad6a4e42481c690f1cf8234006a7e479b4bfe6bde6e537&scene=21#wechat_redirect\" textvalue=\"\u4f60\u5df2\u9009\u4e2d\u4e86\u6dfb\u52a0\u94fe\u63a5\u7684\u5185\u5bb9\" linktype=\"text\" imgurl=\"\" imgdata=\"null\" data-itemshowtype=\"0\" tab=\"innerlink\" data-linktype=\"1\" rel=\"noopener\"><span class=\"js_jump_icon h5_image_link\"><img decoding=\"async\" class=\"rich_pages wxw-img\" data-galleryid=\"\" data-imgfileid=\"100013686\" data-ratio=\"0.35444444444444445\" data-s=\"300,640\" src=\"https:\/\/i0.wp.com\/www.biocloudservice.com\/wordpress\/wp-content\/uploads\/2024\/06\/20_thFQOgQyssQC5z0JC8vHib67rtI8DA.jpg?w=640\" onerror=\"this.src='https:\/\/mmbiz.qpic.cn\/sz_mmbiz_jpg\/zcicibWZessAwkToGOGI4N8c4iaZcg02J3icy1xq0FfHysk9tmTIkDIW8ia32uthFQOgQyssQC5z0JC8vHib67rtI8DA\/640?wx_fmt=jpeg&from=appmsg'\" data-type=\"jpeg\" data-w=\"900\" style=\"\" data-recalc-dims=\"1\" \/><\/span><\/a><\/p>\n<\/section>\n<\/section>\n<\/section>\n<\/section>\n<\/section>\n<\/section>\n<\/section>\n<\/section>\n<\/section>\n<p style=\"margin-top: 0pt;margin-bottom: 0pt;margin-left: 0pt;letter-spacing: 0.578px;text-indent: 0pt;text-wrap: wrap;text-align: justify;line-height: normal;font-size: 12pt;font-family: helvetica;color: rgb(0, 0, 0);break-after: auto;\"><span style=\"font-family: \u5b8b\u4f53;font-size: 12pt;text-indent: 0pt;color: rgba(0, 0, 0, 0.9);letter-spacing: 0.034em;\"><\/span><span style=\"font-family: "Helvetica Neue", Helvetica, "Hiragino Sans GB", "Microsoft YaHei", Arial, sans-serif;font-size: 15px;color: rgba(0, 0, 0, 0.9);letter-spacing: 0.034em;text-align: justify;\"><\/span><span style=\"font-size: var(--articleFontsize);letter-spacing: 0.034em;color: rgba(0, 0, 0, 0.9);font-family: mp-quote, -apple-system-font, BlinkMacSystemFont, "Helvetica Neue", "PingFang SC", "Hiragino Sans GB", "Microsoft YaHei UI", "Microsoft YaHei", Arial, sans-serif;text-align: justify;\"><\/span><span style=\"font-size: 15px;\"><img decoding=\"async\" class=\"rich_pages wxw-img\" data-imgfileid=\"100012811\" data-ratio=\"0.38981481481481484\" data-s=\"300,640\" src=\"https:\/\/i0.wp.com\/www.biocloudservice.com\/wordpress\/wp-content\/uploads\/2024\/06\/21_FbEg9fibwQicL8l2ExKOZZTmAHXabQ-2.png?w=640\" onerror=\"this.src='https:\/\/mmbiz.qpic.cn\/sz_mmbiz_png\/zcicibWZessAx3HetBkB7aOGibFWKqibqIATyC4zFibzCgdrxFwRep6cDMLIbA0FbEg9fibwQicL8l2ExKOZZTmAHXabQ\/640?wx_fmt=png'\" data-type=\"png\" data-w=\"1080\" style=\"font-size: var(--articleFontsize);letter-spacing: 0.034em;caret-color: rgba(0, 0, 0, 0);\" data-recalc-dims=\"1\" \/><\/span><\/p>\n<section powered-by=\"xiumi.us\" style=\"margin-bottom: 0px;letter-spacing: 0.578px;text-wrap: wrap;outline: 0px;font-family: system-ui, -apple-system, BlinkMacSystemFont, "Helvetica Neue", "PingFang SC", "Hiragino Sans GB", "Microsoft YaHei UI", "Microsoft YaHei", Arial, sans-serif;background-color: rgb(255, 255, 255);text-align: left;\">\n<section style=\"outline: 0px;font-size: 16px;\">\n<section powered-by=\"xiumi.us\" style=\"margin: 10px;outline: 0px;justify-content: flex-start;display: flex;flex-flow: row;\">\n<section style=\"padding-right: 10px;padding-left: 10px;outline: 0px;display: inline-block;width: 558px;vertical-align: top;border-style: dashed;border-width: 1px;border-color: rgb(62, 62, 62);align-self: flex-start;flex: 0 0 auto;\">\n<section powered-by=\"xiumi.us\" style=\"margin-top: 10px;margin-bottom: 10px;outline: 0px;\">\n<section style=\"outline: 0px;display: inline-block;width: 536px;border-width: 0px 0px 0px 10px;border-style: solid;border-left-color: rgb(144, 215, 236);border-right-color: rgb(46, 172, 109);box-shadow: rgb(0, 0, 0) 0px 0px 0px;border-bottom-left-radius: 0px;\">\n<section powered-by=\"xiumi.us\" style=\"padding-right: 3px;padding-left: 3px;outline: 0px;\">\n<section style=\"margin-top: 0.95em;margin-bottom: -0.65em;outline: 0px;display: inline-block;width: 520px;vertical-align: top;\">\n<section style=\"margin-top: -1em;padding: 3px 10px;outline: 0px;display: inline-block;vertical-align: top;color: rgb(0, 154, 68);\">\n<p style=\"outline: 0px;\"><strong style=\"outline: 0px;\">\u5f80\u671f\u63a8\u8350<\/strong><\/p>\n<\/section>\n<\/section>\n<\/section>\n<\/section>\n<\/section>\n<section powered-by=\"xiumi.us\" style=\"outline: 0px;text-align: justify;\">\n<section style=\"outline: 0px;letter-spacing: 0.578px;line-height: 1.75em;\"><a target=\"_blank\" href=\"http:\/\/mp.weixin.qq.com\/s?__biz=Mzg3OTg3MjQyNg==&mid=2247491794&idx=1&sn=2b7a4de95169c79202e44813885a8250&chksm=cf7f7017f808f9015689839fe4057fd418bf7b20eb1dfb5a28cd92e56a41b5605e62bfbc16fb&scene=21#wechat_redirect\" textvalue=\"1.\u642d\u5efa\u751f\u4fe1\u5206\u6790\u6d41\u6c34\u7ebf\uff0c\u5982\u5de5\u5382\u4e00\u683724\u5c0f\u65f6\u8fd0\u8f6cSnakemake\u2014\u2014\u8fdb\u9636\u547d\u4ee4\" linktype=\"text\" imgurl=\"\" imgdata=\"null\" data-itemshowtype=\"0\" tab=\"innerlink\" data-linktype=\"2\" hasload=\"1\" style=\"color: var(--weui-LINK);outline: 0px;cursor: pointer;font-size: 14px;\" rel=\"noopener\">1.\u642d\u5efa\u751f\u4fe1\u5206\u6790\u6d41\u6c34\u7ebf\uff0c\u5982\u5de5\u5382\u4e00\u683724\u5c0f\u65f6\u8fd0\u8f6cSnakemake\u2014\u2014\u8fdb\u9636\u547d\u4ee4<\/a><br style=\"outline: 0px;\" \/><\/section>\n<section style=\"outline: 0px;letter-spacing: 0.578px;line-height: 1.75em;\"><a target=\"_blank\" href=\"http:\/\/mp.weixin.qq.com\/s?__biz=Mzg3OTg3MjQyNg==&mid=2247491705&idx=1&sn=9ff9b6da28b3a256a99c6697d589be66&chksm=cf7f70bcf808f9aafd1019a0bba3dd3a55e2867dbb9a09203f13c2683adf867094637c405ed1&scene=21#wechat_redirect\" textvalue=\"2.\u6bd4blast\u8fd8\u4f18\u79c0\u7684\u5e8f\u5217\u6bd4\u5bf9\u5de5\u5177\uff1fHMMER\u6765\u4e86\" linktype=\"text\" imgurl=\"\" imgdata=\"null\" data-itemshowtype=\"0\" tab=\"innerlink\" data-linktype=\"2\" hasload=\"1\" style=\"color: var(--weui-LINK);outline: 0px;cursor: pointer;font-size: 14px;\" rel=\"noopener\">2.\u6bd4blast\u8fd8\u4f18\u79c0\u7684\u5e8f\u5217\u6bd4\u5bf9\u5de5\u5177\uff1fHMMER\u6765\u4e86<\/a><\/section>\n<section style=\"outline: 0px;letter-spacing: 0.578px;line-height: 1.75em;\"><a target=\"_blank\" href=\"http:\/\/mp.weixin.qq.com\/s?__biz=Mzg3OTg3MjQyNg==&mid=2247491909&idx=1&sn=902e34bcf53e605fba2b457ec6a33e36&chksm=cf7f7180f808f8961542f458a49da14e85d8831449fb65fbf2623d55affc564686a5422f56fd&scene=21#wechat_redirect\" textvalue=\"3.\u5bf9\u5355\u7ec6\u80de\u5206\u6790\u6beb\u65e0\u5934\u7eea\uff1f\u8ba9popsicleR\u9886\u4f60\u5165\u95e8\" linktype=\"text\" imgurl=\"\" imgdata=\"null\" data-itemshowtype=\"0\" tab=\"innerlink\" data-linktype=\"2\" hasload=\"1\" style=\"color: var(--weui-LINK);outline: 0px;cursor: pointer;font-size: 14px;\" rel=\"noopener\">3.\u5bf9\u5355\u7ec6\u80de\u5206\u6790\u6beb\u65e0\u5934\u7eea\uff1f\u8ba9popsicleR\u9886\u4f60\u5165\u95e8<\/a><\/section>\n<section style=\"outline: 0px;letter-spacing: 0.578px;line-height: 1.75em;\"><a target=\"_blank\" href=\"http:\/\/mp.weixin.qq.com\/s?__biz=Mzg3OTg3MjQyNg==&mid=2247491905&idx=1&sn=fb34ebd6282962c7803badaee7a39096&chksm=cf7f7184f808f8929608c0050344ad86193d0fc6455c1c18e16cc17bf4b37832b63d3b18284e&scene=21#wechat_redirect\" textvalue=\"4.\u5c0f\u679c\u5e26\u4f60\u7ed8\u5236ROC\u66f2\u7ebf\u8bc4\u4f30\u751f\u5b58\u9884\u6d4b\u80fd\u529b\" linktype=\"text\" imgurl=\"\" imgdata=\"null\" data-itemshowtype=\"0\" tab=\"innerlink\" data-linktype=\"2\" hasload=\"1\" style=\"color: var(--weui-LINK);outline: 0px;cursor: pointer;\" rel=\"noopener\"><span style=\"outline: 0px;font-size: 14px;\">4.\u5c0f\u679c\u5e26\u4f60\u7ed8\u5236ROC\u66f2\u7ebf\u8bc4\u4f30\u751f\u5b58\u9884\u6d4b\u80fd\u529b<\/span><\/a><\/section>\n<section style=\"outline: 0px;letter-spacing: 0.578px;line-height: 1.75em;\"><a target=\"_blank\" href=\"http:\/\/mp.weixin.qq.com\/s?__biz=Mzg3OTg3MjQyNg==&mid=2247493633&idx=1&sn=2263dfe7572c0bcf6816c2c1a37d79de&chksm=cf7f78c4f808f1d2209321d6ace39fde5fa60c0691b56f88eac21916f5a2872ce8ee345f1d5f&scene=21#wechat_redirect\" textvalue=\"\u8f6f\u4ef6\u5305\u5b89\u88c5\u3001\u6253\u602a\u5feb\u53c8\u597d\uff0c1024G\u5b58\u50a8\u7684\u751f\u4fe1\u670d\u52a1\u5668\uff1b\u8fd8\u6709\u6bd4\u8fd9\u66f4\u7701\u94b1\u7684\u561b\uff01\uff01\uff01\" linktype=\"text\" imgurl=\"\" imgdata=\"null\" data-itemshowtype=\"0\" tab=\"innerlink\" data-linktype=\"2\" hasload=\"1\" style=\"color: var(--weui-LINK);outline: 0px;cursor: pointer;letter-spacing: 0.578px;font-size: 14px;\" rel=\"noopener\">5.\u8f6f\u4ef6\u5305\u5b89\u88c5\u3001\u6253\u602a\u5feb\u53c8\u597d\uff0c1024G\u5b58\u50a8\u7684\u751f\u4fe1\u670d\u52a1\u5668\uff1b\u8fd8\u6709\u6bd4\u8fd9\u66f4\u7701\u94b1\u7684\u561b\uff01\uff01\uff01<\/a><\/section>\n<\/section>\n<\/section>\n<\/section>\n<\/section>\n<\/section>\n<p style=\"display: none;\"><mp-style-type data-value=\"3\"><\/mp-style-type><\/p>\n<p><\/content>\n<\/div>\n<p><\/body><br \/>\n<\/html><\/p>\n","protected":false},"excerpt":{"rendered":"<p>\u86cb\u767d\u8d28\u7ec4\u5b66\u7684\u745e\u58eb\u519b\u5200\uff1ampwR\u8ba9\u5b9e\u9a8c\u5206\u6790\u53d8\u5f97\u5982\u6b64\u7b80\u5355\uff01 \u539f\u521b  \u5c0f\u679c &nbsp […]<\/p>\n","protected":false},"author":1,"featured_media":0,"comment_status":"closed","ping_status":"","sticky":false,"template":"","format":"standard","meta":{"jetpack_post_was_ever_published":false,"_jetpack_newsletter_access":""},"categories":[1],"tags":[],"jetpack_featured_media_url":"","_links":{"self":[{"href":"http:\/\/www.biocloudservice.com\/wordpress\/index.php?rest_route=\/wp\/v2\/posts\/60048"}],"collection":[{"href":"http:\/\/www.biocloudservice.com\/wordpress\/index.php?rest_route=\/wp\/v2\/posts"}],"about":[{"href":"http:\/\/www.biocloudservice.com\/wordpress\/index.php?rest_route=\/wp\/v2\/types\/post"}],"author":[{"embeddable":true,"href":"http:\/\/www.biocloudservice.com\/wordpress\/index.php?rest_route=\/wp\/v2\/users\/1"}],"replies":[{"embeddable":true,"href":"http:\/\/www.biocloudservice.com\/wordpress\/index.php?rest_route=%2Fwp%2Fv2%2Fcomments&post=60048"}],"version-history":[{"count":1,"href":"http:\/\/www.biocloudservice.com\/wordpress\/index.php?rest_route=\/wp\/v2\/posts\/60048\/revisions"}],"predecessor-version":[{"id":60071,"href":"http:\/\/www.biocloudservice.com\/wordpress\/index.php?rest_route=\/wp\/v2\/posts\/60048\/revisions\/60071"}],"wp:attachment":[{"href":"http:\/\/www.biocloudservice.com\/wordpress\/index.php?rest_route=%2Fwp%2Fv2%2Fmedia&parent=60048"}],"wp:term":[{"taxonomy":"category","embeddable":true,"href":"http:\/\/www.biocloudservice.com\/wordpress\/index.php?rest_route=%2Fwp%2Fv2%2Fcategories&post=60048"},{"taxonomy":"post_tag","embeddable":true,"href":"http:\/\/www.biocloudservice.com\/wordpress\/index.php?rest_route=%2Fwp%2Fv2%2Ftags&post=60048"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}