{"id":60391,"date":"2024-06-17T11:20:55","date_gmt":"2024-06-17T03:20:55","guid":{"rendered":"http:\/\/www.biocloudservice.com\/wordpress\/?p=60391"},"modified":"2024-06-17T11:20:55","modified_gmt":"2024-06-17T03:20:55","slug":"%e6%83%b3%e8%a6%81%e4%b8%80%e9%94%ae%e6%90%9e%e5%ae%9a%e6%89%80%e6%9c%89%e5%8d%95%e7%bb%86%e8%83%9e%e6%95%b0%e6%8d%ae%e7%9a%84%e6%89%b9%e6%ac%a1%e6%95%88%e5%ba%94%ef%bc%9f%e9%99%a4%e9%9d%9e%e4%bd%a0","status":"publish","type":"post","link":"http:\/\/www.biocloudservice.com\/wordpress\/?p=60391","title":{"rendered":"\u60f3\u8981\u4e00\u952e\u641e\u5b9a\u6240\u6709\u5355\u7ec6\u80de\u6570\u636e\u7684\u6279\u6b21\u6548\u5e94\uff1f\u9664\u975e\u4f60\u7528Harmony"},"content":{"rendered":"<p><html><br \/>\n<head><br \/>\n<title><\/title><br \/>\n<meta charset=\"utf-8\"><br \/>\n<meta name=\"viewport\" 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target=\"_blank\" rel=\"noopener\">#\u751f\u4fe1\u5c0f\u767d\u76f8\u5173<\/a><\/p>\n<\/div>\n<p data-mpa-powered-by=\"yiban.io\"><img decoding=\"async\" class=\"rich_pages wxw-img\" data-galleryid=\"\" data-imgfileid=\"100012439\" data-ratio=\"0.23333333333333334\" data-s=\"300,640\" src=\"https:\/\/i0.wp.com\/www.biocloudservice.com\/wordpress\/wp-content\/uploads\/2024\/06\/1_rE2v0O5WiaUDJjgv5bxK2G1ePHyH2g-73.jpg?w=640\" onerror=\"this.src='https:\/\/mmbiz.qpic.cn\/sz_mmbiz_jpg\/zcicibWZessAysHY49vPGCraibakiaNq6hQgn8C5MfvVLQGxlNZPEia2PajKAzrE2v0O5WiaUDJjgv5bxK2G1ePHyH2g\/640?wx_fmt=jpeg'\" data-type=\"jpeg\" data-w=\"1080\" style=\"font-family: &quot;Helvetica Neue&quot;, Helvetica, &quot;Hiragino Sans GB&quot;, &quot;Microsoft YaHei&quot;, Arial, sans-serif;font-size: 15px;letter-spacing: 0.578px;text-align: center;\"  data-recalc-dims=\"1\" \/><span style=\"font-family: &quot;Helvetica Neue&quot;, Helvetica, &quot;Hiragino Sans GB&quot;, &quot;Microsoft YaHei&quot;, Arial, 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style=\"font-family: &quot;Helvetica Neue&quot;, Helvetica, &quot;Hiragino Sans GB&quot;, &quot;Microsoft YaHei&quot;, Arial, sans-serif;font-size: 15px;\">Harmony\u5de5\u5177\u5305\u53bb\u6279\u6b21\u6548\u5e94\u7684\u539f\u7406\uff1a<\/span><\/p>\n<p><span style=\"font-family: &quot;Helvetica Neue&quot;, Helvetica, &quot;Hiragino Sans GB&quot;, &quot;Microsoft YaHei&quot;, Arial, sans-serif;font-size: 15px;\">Harmony \u662f\u4e00\u79cd\u7528\u4e8e\u5355\u7ec6\u80de RNA-\u6d4b\u5e8f\u6570\u636e (scRNA-seq) \u7684\u6279\u6b21\u6548\u5e94\u4fee\u6b63\u65b9\u6cd5\u3002\u7531\u4e8e\u5b83\u662f\u5728\u5355\u7ec6\u80de\u8f6c\u5f55\u7ec4\u5b66\u4e2d\u4f7f\u7528\u7684\uff0c\u5c0f\u679c\u7b80\u8981\u6982\u62ec\u4e00\u4e0b\u5b83\u7684\u5de5\u4f5c\u539f\u7406\u3002<\/span><img decoding=\"async\" loading=\"lazy\" class=\"rich_pages wxw-img\" data-imgfileid=\"100012441\" data-ratio=\"0.4648148148148148\" src=\"https:\/\/i0.wp.com\/www.biocloudservice.com\/wordpress\/wp-content\/uploads\/2024\/06\/2_AK0icvZEOEHlWI2icBuXkOVUicnDzw.png?resize=553%2C257\" onerror=\"this.src='https:\/\/mmbiz.qpic.cn\/sz_mmbiz_png\/zcicibWZessAxPqeNQsFjm2HibIuSld9Nh9HBVNmNPFqe3dREOiaH0R7HruK1LKAK0icvZEOEHlWI2icBuXkOVUicnDzw\/640?wx_fmt=png'\" data-type=\"png\" data-w=\"1080\" height=\"257 .1400146484375\" width=\"553 .739990234375\"  data-recalc-dims=\"1\" \/><\/p>\n<p><span style=\"font-family: &quot;Helvetica Neue&quot;, Helvetica, &quot;Hiragino Sans GB&quot;, &quot;Microsoft YaHei&quot;, Arial, sans-serif;font-size: 15px;\">\u2022&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; \u9996\u5148\uff0c\u4f7f\u7528\u4e3b\u6210\u5206\u5206\u6790\uff08PCA\uff09\u5c06\u7ec6\u80de\u5d4c\u5165\u5230\u4f4e\u7ef4\u7a7a\u95f4\u4e2d\u3002&nbsp; &nbsp;<\/span><o:page><\/o:page><\/p>\n<p><span style=\"font-family: &quot;Helvetica Neue&quot;, Helvetica, &quot;Hiragino Sans GB&quot;, &quot;Microsoft YaHei&quot;, Arial, sans-serif;font-size: 15px;\">\u2022&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; \u7136\u540e\uff0c\u4f7f\u7528\u6a21\u7cca\u805a\u7c7b\u5c06\u6bcf\u4e2a\u7ec6\u80de\u5206\u914d\u5230\u591a\u4e2a\u805a\u7c7b\u4e2d\uff0c\u540c\u65f6\u4f7f\u7528\u4e00\u4e2a\u60e9\u7f5a\u9879\u6765\u6700\u5927\u5316\u6bcf\u4e2a\u805a\u7c7b\u5185\u6570\u636e\u96c6\u7684\u591a\u6837\u6027\u3002<\/span><\/p>\n<p><span style=\"font-family: &quot;Helvetica Neue&quot;, Helvetica, &quot;Hiragino Sans GB&quot;, &quot;Microsoft YaHei&quot;, Arial, sans-serif;font-size: 15px;\">\u2022&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; \u63a5\u7740\uff0c\u8ba1\u7b97\u6bcf\u4e2a\u805a\u7c7b\u7684\u5168\u5c40\u8d28\u5fc3\uff0c\u4ee5\u53ca\u6bcf\u4e2a\u805a\u7c7b\u7684\u6570\u636e\u96c6\u7279\u5b9a\u8d28\u5fc3\u3002<\/span><\/p>\n<p><span style=\"font-family: &quot;Helvetica Neue&quot;, Helvetica, &quot;Hiragino Sans GB&quot;, &quot;Microsoft YaHei&quot;, Arial, sans-serif;font-size: 15px;\">\u2022&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; \u7136\u540e\uff0c\u6839\u636e\u8d28\u5fc3\u8ba1\u7b97\u6bcf\u4e2a\u6570\u636e\u96c6\u7684\u6821\u6b63\u56e0\u5b50\u3002<\/span><\/p>\n<p><span style=\"font-family: &quot;Helvetica Neue&quot;, Helvetica, &quot;Hiragino Sans GB&quot;, &quot;Microsoft YaHei&quot;, Arial, sans-serif;font-size: 15px;\">\u2022&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; \u6700\u540e\uff0c\u4f7f\u7528\u7279\u5b9a\u4e8e\u7ec6\u80de\u7684\u56e0\u5b50\u6821\u6b63\u6bcf\u4e2a\u7ec6\u80de\uff1a\u7531\u5728\u6a21\u7cca\u805a\u7c7b\u4e2d\u8fdb\u884c\u7684\u8f6f\u5206\u914d\u52a0\u6743\u7684\u6570\u636e\u96c6\u6821\u6b63\u56e0\u5b50\u7684\u7ebf\u6027\u7ec4\u5408\u3002<\/span><\/p>\n<p><span style=\"font-family: &quot;Helvetica Neue&quot;, Helvetica, &quot;Hiragino Sans GB&quot;, &quot;Microsoft YaHei&quot;, Arial, sans-serif;font-size: 15px;\">\u91cd\u590d\u4e0a\u8ff0\u6b65\u9aa4\u76f4\u5230\u6536\u655b\u3002<\/span><\/p>\n<p><span style=\"font-family: &quot;Helvetica Neue&quot;, Helvetica, &quot;Hiragino Sans GB&quot;, &quot;Microsoft YaHei&quot;, Arial, sans-serif;font-size: 15px;\">\u6240\u4ee5\uff0cHarmony \u7684\u5de5\u4f5c\u539f\u7406\u5c31\u662f\u901a\u8fc7\u627e\u51fa\u4e0d\u540c\u7ec6\u80de\u6279\u6b21\u4e4b\u95f4\u7684\u76f8\u4f3c\u57fa\u56e0\u8868\u8fbe\u6a21\u5f0f\uff0c\u5e76\u6839\u636e\u8fd9\u4e9b\u6a21\u5f0f\u8c03\u6574\u5b83\u4eec\u7684\u6570\u636e\uff0c\u4ece\u800c\u6d88\u9664\u6279\u6b21\u6548\u5e94\u3002\u60f3\u6df1\u5165\u4e86\u89e3\u7684\u5c0f\u4f19\u4f34\u53ef\u4ee5\u53bb\u770b\u539f\u6587\uff1a<\/span><span style=\"font-family: &quot;Helvetica Neue&quot;, Helvetica, &quot;Hiragino Sans GB&quot;, &quot;Microsoft YaHei&quot;, Arial, sans-serif;font-size: 15px;\">https:\/\/www.nature.com\/articles\/s41592-019-0619-0<\/span><\/p>\n<p><img decoding=\"async\" loading=\"lazy\" class=\"rich_pages wxw-img\" data-imgfileid=\"100012440\" data-ratio=\"0.38425925925925924\" src=\"https:\/\/i0.wp.com\/www.biocloudservice.com\/wordpress\/wp-content\/uploads\/2024\/06\/3_C0b7ZibwSiaLrgfF7DhzOA5ZCQJSBA.png?resize=553%2C212\" onerror=\"this.src='https:\/\/mmbiz.qpic.cn\/sz_mmbiz_png\/zcicibWZessAxPqeNQsFjm2HibIuSld9Nh9rHMV9wcIxdm6BJafNVibSkCrISUC0b7ZibwSiaLrgfF7DhzOA5ZCQJSBA\/640?wx_fmt=png'\" data-type=\"png\" data-w=\"1080\" height=\"212 .66998291015625\" width=\"553 .739990234375\"  data-recalc-dims=\"1\" \/><\/p>\n<p><span style=\"letter-spacing: 0.034em;font-family: &quot;Helvetica Neue&quot;, Helvetica, &quot;Hiragino Sans GB&quot;, &quot;Microsoft YaHei&quot;, Arial, sans-serif;font-size: 15px;\"><\/span><span style=\"font-family: &quot;Helvetica Neue&quot;, Helvetica, &quot;Hiragino Sans GB&quot;, &quot;Microsoft YaHei&quot;, Arial, sans-serif;font-size: 15px;letter-spacing: 0.034em;\">\u9996\u5148\uff0c\u8ba9\u6211\u4eec\u6765\u4e86\u89e3\u4e00\u4e0bHarmony\u5305\u7684\u5b89\u88c5\u6b65\u9aa4\u3002\u5728R\u73af\u5883\u4e2d\uff0c\u60a8\u53ef\u4ee5\u4f7f\u7528\u4ee5\u4e0b\u4ee3\u7801\u5b89\u88c5\u8be5\u5305\uff1a<\/span><\/p>\n<p><span style=\"font-family: &quot;Helvetica Neue&quot;, Helvetica, &quot;Hiragino Sans GB&quot;, &quot;Microsoft YaHei&quot;, Arial, sans-serif;font-size: 15px;letter-spacing: 0.034em;\"><img decoding=\"async\" class=\"rich_pages wxw-img\" data-galleryid=\"\" data-imgfileid=\"100012444\" data-ratio=\"0.38981481481481484\" data-s=\"300,640\" src=\"https:\/\/i0.wp.com\/www.biocloudservice.com\/wordpress\/wp-content\/uploads\/2024\/06\/4_IWicymEetCc6Enf2BkUE4Yz1Ya5e5w-8.png?w=640\" onerror=\"this.src='https:\/\/mmbiz.qpic.cn\/sz_mmbiz_png\/zcicibWZessAyuYsqlJnQUJvnS2iciaDibtfbdV0VmHlriaSjYwjFPLp1BLjokHIWicymEetCc6Enf2BkUE4Yz1Ya5e5w\/640?wx_fmt=png'\" data-type=\"png\" data-w=\"1080\" style=\"letter-spacing: 0.578px;text-wrap: wrap;text-align: center;\"  data-recalc-dims=\"1\" \/><\/span><\/p>\n<section class=\"code-snippet__fix code-snippet__js\">\n<ul class=\"code-snippet__line-index code-snippet__js\">\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<\/ul>\n<pre class=\"code-snippet__js\" data-lang=\"php\"><code><span class=\"code-snippet_outer\"> \u5982\u679c\u60a8\u5c1a\u672a\u5b89\u88c5BiocManager\uff0c\u8bf7\u5148\u5b89\u88c5<\/span><\/code><code><span class=\"code-snippet_outer\"><span class=\"code-snippet__keyword\">if<\/span> (!requireNamespace(<span class=\"code-snippet__string\">\"BiocManager\"<\/span>, quietly = <span class=\"code-snippet__keyword\">TRUE<\/span>))<\/span><\/code><code><span class=\"code-snippet_outer\">  install.packages(<span class=\"code-snippet__string\">\"BiocManager\"<\/span>)<\/span><\/code><code><span class=\"code-snippet_outer\"><span class=\"code-snippet__comment\"># \u5b89\u88c5Harmony\u5305<\/span><\/span><\/code><code><span class=\"code-snippet_outer\">BiocManager::install(<span class=\"code-snippet__string\">\"Harmony\"<\/span>)<\/span><\/code><\/pre>\n<\/section>\n<p><span style=\"font-family: &quot;Helvetica Neue&quot;, Helvetica, &quot;Hiragino Sans GB&quot;, &quot;Microsoft YaHei&quot;, Arial, sans-serif;font-size: 15px;\">\u5c0fTip<\/span><\/p>\n<p><span style=\"font-family: &quot;Helvetica Neue&quot;, Helvetica, &quot;Hiragino Sans GB&quot;, &quot;Microsoft YaHei&quot;, Arial, sans-serif;font-size: 15px;\">\u5047\u5982\u8fd8\u5b89\u88c5\u4e0d\u4e0a\uff0c\u4e5f\u53ef\u4ee5\u7528\u5c0f\u679c\u4e4b\u524d\u4ecb\u7ecd\u7684devtools\u4e00\u952e\u5b89\u88c5<\/span><span style=\"font-family: &quot;Helvetica Neue&quot;, Helvetica, &quot;Hiragino Sans GB&quot;, &quot;Microsoft YaHei&quot;, Arial, sans-serif;font-size: 15px;letter-spacing: 0.034em;\"><\/span><\/p>\n<section class=\"code-snippet__fix code-snippet__js\">\n<ul class=\"code-snippet__line-index code-snippet__js\">\n<li><\/li>\n<li><\/li>\n<\/ul>\n<pre class=\"code-snippet__js\" data-lang=\"javascript\"><code><span class=\"code-snippet_outer\">library(devtools)<\/span><\/code><code><span class=\"code-snippet_outer\">install_github(<span class=\"code-snippet__string\">\"immunogenomics\/harmony\"<\/span>)&nbsp;<\/span><\/code><\/pre>\n<\/section>\n<p><span style=\"font-family: &quot;Helvetica Neue&quot;, Helvetica, &quot;Hiragino Sans GB&quot;, &quot;Microsoft YaHei&quot;, Arial, sans-serif;font-size: 15px;\">\u5b89\u88c5\u5b8c\u6210\u540e\uff0c\u6211\u4eec\u53ef\u4ee5\u5f00\u59cb\u4f7f\u7528Harmony\u5305\u6765\u8c03\u6574\u6279\u6b21\u6548\u5e94\u3002<\/span><\/p>\n<p><span style=\"font-family: &quot;Helvetica Neue&quot;, Helvetica, &quot;Hiragino Sans GB&quot;, &quot;Microsoft YaHei&quot;, Arial, sans-serif;font-size: 15px;\">\u5b9e\u6218\u6f14\u7ec3\uff1a<\/span><\/p>\n<p><span style=\"font-family: &quot;Helvetica Neue&quot;, Helvetica, &quot;Hiragino Sans GB&quot;, &quot;Microsoft YaHei&quot;, Arial, sans-serif;font-size: 15px;\">\u4e0b\u8f7d\u793a\u4f8b\u6570\u636e\uff08\u5c0f\u679c\u5df2\u7ecf\u5e2e\u4f60\u627e\u597d\u4e86<\/span><\/p>\n<p><span style=\"font-family: &quot;Helvetica Neue&quot;, Helvetica, &quot;Hiragino Sans GB&quot;, &quot;Microsoft YaHei&quot;, Arial, sans-serif;font-size: 15px;\">\u767e\u5ea6\u4e91\u94fe\u63a5\uff1a<\/span><\/p>\n<p><span style=\"font-family: &quot;Helvetica Neue&quot;, Helvetica, &quot;Hiragino Sans GB&quot;, &quot;Microsoft YaHei&quot;, Arial, sans-serif;font-size: 15px;\">https:\/\/pan.baidu.com\/s\/1BcimNtpmfYPCXAzJDaBaUQ<\/span><\/p>\n<p><span style=\"font-family: &quot;Helvetica Neue&quot;, Helvetica, &quot;Hiragino Sans GB&quot;, &quot;Microsoft YaHei&quot;, Arial, sans-serif;font-size: 15px;\">\u63d0\u53d6\u7801\uff1alnfy<\/span><\/p>\n<p><span style=\"font-family: &quot;Helvetica Neue&quot;, Helvetica, &quot;Hiragino Sans GB&quot;, &quot;Microsoft YaHei&quot;, Arial, sans-serif;font-size: 15px;\"># \u5bfc\u5165\u6570\u636e, \u662f\u4e24\u4e2a\u7a00\u758f\u77e9\u9635<\/span><\/p>\n<section class=\"code-snippet__fix code-snippet__js\">\n<ul class=\"code-snippet__line-index code-snippet__js\">\n<li><\/li>\n<\/ul>\n<pre class=\"code-snippet__js\" data-lang=\"sql\"><code><span class=\"code-snippet_outer\"><span class=\"code-snippet__keyword\">load<\/span>(<span class=\"code-snippet__string\">'pbmc_test.RData'<\/span>)<\/span><\/code><\/pre>\n<\/section>\n<p><span style=\"font-family: &quot;Helvetica Neue&quot;, Helvetica, &quot;Hiragino Sans GB&quot;, &quot;Microsoft YaHei&quot;, Arial, sans-serif;font-size: 15px;letter-spacing: 0.034em;\"># \u5bfc\u5165\u6240\u9700<\/span><span style=\"font-family: &quot;Helvetica Neue&quot;, Helvetica, &quot;Hiragino Sans GB&quot;, &quot;Microsoft YaHei&quot;, Arial, sans-serif;font-size: 15px;letter-spacing: 0.034em;\">\u7684\u5e93<\/span><\/p>\n<section class=\"code-snippet__fix code-snippet__js\">\n<ul class=\"code-snippet__line-index code-snippet__js\">\n<li><\/li>\n<li><\/li>\n<\/ul>\n<pre class=\"code-snippet__js\"><code><span class=\"code-snippet_outer\">library(harmony)<\/span><\/code><code><span class=\"code-snippet_outer\">library(Seurat)<\/span><\/code><\/pre>\n<\/section>\n<p><span style=\"font-family: &quot;Helvetica Neue&quot;, Helvetica, &quot;Hiragino Sans GB&quot;, &quot;Microsoft YaHei&quot;, Arial, sans-serif;font-size: 15px;letter-spacing: 0.034em;\">#\u521b\u5efa\u4e00\u4e2aSeurat\u5bf9\u8c61\uff0c\u7528\u4e8e\u5b58\u50a8\u548c\u5206\u6790\u5355\u7ec6\u80de\u8f6c\u5f55\u7ec4\u6570\u636e\u3002<\/span><span style=\"font-family: &quot;Helvetica Neue&quot;, Helvetica, &quot;Hiragino Sans GB&quot;, &quot;Microsoft YaHei&quot;, Arial, sans-serif;font-size: 15px;letter-spacing: 0.034em;\">counts\u53c2\u6570\u662f\u6307\u5b9a\u8ba1\u6570\u77e9\u9635\uff0c\u8fd9\u91cc\u662f\u5c06\u4e24\u4e2a\u7a00\u758f\u77e9\u9635\uff08\u5206\u522b\u4ee3\u8868\u523a\u6fc0\u7ec4\u548c\u5bf9\u7167\u7ec4\u7684\u5355\u7ec6\u80de\u6570\u636e\uff09\u6309\u5217\u5408\u5e76\u3002<\/span><span style=\"font-family: &quot;Helvetica Neue&quot;, Helvetica, &quot;Hiragino Sans GB&quot;, &quot;Microsoft YaHei&quot;, Arial, sans-serif;font-size: 15px;letter-spacing: 0.034em;\">min.cells=5\uff0c\u8868\u793a\u53ea\u4fdd\u7559\u5728\u81f3\u5c115\u4e2a\u7ec6\u80de\u4e2d\u6709\u8868\u8fbe\u7684\u57fa\u56e0\u3002<\/span><span style=\"font-family: &quot;Helvetica Neue&quot;, Helvetica, &quot;Hiragino Sans GB&quot;, &quot;Microsoft YaHei&quot;, Arial, sans-serif;font-size: 15px;\"><\/span><\/p>\n<section class=\"code-snippet__fix code-snippet__js\">\n<ul class=\"code-snippet__line-index code-snippet__js\">\n<li><\/li>\n<\/ul>\n<pre class=\"code-snippet__js\" data-lang=\"xml\"><code><span class=\"code-snippet_outer\">pbmc <span class=\"code-snippet__tag\">&lt;<span class=\"code-snippet__name\">-<\/span> <span class=\"code-snippet__attr\">CreateSeuratObject<\/span>(<span class=\"code-snippet__attr\">counts<\/span> = <span class=\"code-snippet__string\">cbind(stim.sparse,<\/span> <span class=\"code-snippet__attr\">ctrl.sparse<\/span>), <span class=\"code-snippet__attr\">project<\/span> = <span class=\"code-snippet__string\">\"PBMC\"<\/span>, <span class=\"code-snippet__attr\">min.cells<\/span> = <span class=\"code-snippet__string\">5)<\/span><\/span><\/span><\/code><\/pre>\n<\/section>\n<p><span style=\"font-family: &quot;Helvetica Neue&quot;, Helvetica, &quot;Hiragino Sans GB&quot;, &quot;Microsoft YaHei&quot;, Arial, sans-serif;font-size: 15px;\">#\u7ed9Seurat\u5bf9\u8c61\u6dfb\u52a0\u65b0\u5217\uff0c\u5c06\u6bcf\u4e2a\u7ec6\u80de\u5206\u4e3a\u523a\u6fc0\u7ec4\u6216\u662f\u5bf9\u7167\u7ec4\u3002<\/span><\/p>\n<section class=\"code-snippet__fix code-snippet__js\">\n<ul class=\"code-snippet__line-index code-snippet__js\">\n<li><\/li>\n<\/ul>\n<pre class=\"code-snippet__js\" data-lang=\"css\"><code><span class=\"code-snippet_outer\"><span class=\"code-snippet__selector-tag\">pbmc<\/span>@<span class=\"code-snippet__keyword\">meta<\/span>.<span class=\"code-snippet__keyword\">data<\/span>$<span class=\"code-snippet__keyword\">group<\/span> &lt;- c(rep(<span class=\"code-snippet__string\">\"STIM\"<\/span>, ncol(stim.sparse)), rep(<span class=\"code-snippet__string\">\"CTRL\"<\/span>, ncol(ctrl.sparse)))<\/span><\/code><\/pre>\n<\/section>\n<p><span style=\"font-family: &quot;Helvetica Neue&quot;, Helvetica, &quot;Hiragino Sans GB&quot;, &quot;Microsoft YaHei&quot;, Arial, sans-serif;font-size: 15px;letter-spacing: 0.034em;\">#\u5bf9\u77e9\u9635\u8fdb\u884c\u5f52\u4e00\u5316\u5904\u7406\uff0c\u4f7f\u6bcf\u4e2a\u7ec6\u80de\u7684\u57fa\u56e0\u8868\u8fbe\u91cf\u53ef\u4ee5\u5728\u4e0d<\/span><span style=\"font-family: &quot;Helvetica Neue&quot;, Helvetica, &quot;Hiragino Sans GB&quot;, &quot;Microsoft YaHei&quot;, Arial, sans-serif;font-size: 15px;letter-spacing: 0.034em;\">\u540c\u7ec6\u80de\u4e4b\u95f4\u8fdb\u884c\u6bd4\u8f83\u3002<\/span><span style=\"font-family: &quot;Helvetica Neue&quot;, Helvetica, &quot;Hiragino Sans GB&quot;, &quot;Microsoft YaHei&quot;, Arial, sans-serif;font-size: 15px;letter-spacing: 0.034em;\">verbose\u53c2\u6570\u6307\u662f\u5426\u6253\u5370\u51fa\u8be6\u7ec6\u4fe1\u606f\u3002<\/span><span style=\"font-family: &quot;Helvetica Neue&quot;, Helvetica, &quot;Hiragino Sans GB&quot;, &quot;Microsoft YaHei&quot;, Arial, sans-serif;font-size: 15px;\"><\/span><\/p>\n<section class=\"code-snippet__fix code-snippet__js\">\n<ul class=\"code-snippet__line-index code-snippet__js\">\n<li><\/li>\n<\/ul>\n<pre class=\"code-snippet__js\" data-lang=\"php\"><code><span class=\"code-snippet_outer\">pbmc &lt;- Seurat::NormalizeData(pbmc,verbose = <span class=\"code-snippet__keyword\">FALSE<\/span>)<\/span><\/code><\/pre>\n<\/section>\n<p><span style=\"font-family: &quot;Helvetica Neue&quot;, Helvetica, &quot;Hiragino Sans GB&quot;, &quot;Microsoft YaHei&quot;, Arial, sans-serif;font-size: 15px;\">#\u627e\u51fa\u4e0d\u540c\u7ec6\u80de\u4e4b\u95f4\u6709\u663e\u8457\u5dee\u5f02\u7684\u57fa\u56e0\u3002\uff0c\u7528\u4e8e\u540e\u7eed\u7684\u805a\u7c7b\u548c\u964d\u7ef4\u5206\u6790\u3002selection.method\u53c2\u6570\u662f\u6307\u5b9a\u9009\u62e9\u65b9\u6cd5\uff0c\u8fd9\u91cc\u662f&#8221;vst&#8221;\uff0c\u610f\u601d\u662f\u4f7f\u7528\u65b9\u5dee\u7a33\u5b9a\u5316\u53d8\u6362\uff08variance stabilizing transformation\uff09\u3002nfeatures\u53c2\u6570\u662f\u6307\u5b9a\u8981\u9009\u62e9\u7684\u7279\u5f81\u57fa\u56e0\u6570\u76ee\uff0c\u8fd9\u91cc\u662f2000\u3002&nbsp; &nbsp;<\/span><o:page><\/o:page><\/p>\n<section class=\"code-snippet__fix code-snippet__js\">\n<ul class=\"code-snippet__line-index code-snippet__js\">\n<li><\/li>\n<\/ul>\n<pre class=\"code-snippet__js\" data-lang=\"xml\"><code><span class=\"code-snippet_outer\">pbmc <span class=\"code-snippet__tag\">&lt;<span class=\"code-snippet__name\">-<\/span> <span class=\"code-snippet__attr\">FindVariableFeatures<\/span>(<span class=\"code-snippet__attr\">pbmc<\/span>, <span class=\"code-snippet__attr\">selection.method<\/span> = <span class=\"code-snippet__string\">\"vst\"<\/span>, <span class=\"code-snippet__attr\">nfeatures<\/span> = <span class=\"code-snippet__string\">2000)<\/span><\/span><\/span><\/code><\/pre>\n<\/section>\n<p><span style=\"font-family: &quot;Helvetica Neue&quot;, Helvetica, &quot;Hiragino Sans GB&quot;, &quot;Microsoft YaHei&quot;, Arial, sans-serif;font-size: 15px;letter-spacing: 0.034em;\">#\u5c06\u6240\u6709\u57fa\u56e0<\/span><span style=\"font-family: &quot;Helvetica Neue&quot;, Helvetica, &quot;Hiragino Sans GB&quot;, &quot;Microsoft YaHei&quot;, Arial, sans-serif;font-size: 15px;letter-spacing: 0.034em;\">\u7684\u540d\u79f0\u8d4b\u503c\u7ed9\u4e00\u4e2a\u53d8\u91cf<\/span><span style=\"font-family: &quot;Helvetica Neue&quot;, Helvetica, &quot;Hiragino Sans GB&quot;, &quot;Microsoft YaHei&quot;, Arial, sans-serif;font-size: 15px;\"><\/span><\/p>\n<section class=\"code-snippet__fix code-snippet__js\">\n<ul class=\"code-snippet__line-index code-snippet__js\">\n<li><\/li>\n<\/ul>\n<pre class=\"code-snippet__js\" data-lang=\"css\"><code><span class=\"code-snippet_outer\"><span class=\"code-snippet__selector-tag\">all<\/span><span class=\"code-snippet__selector-class\">.genes<\/span> &lt;<span class=\"code-snippet__selector-tag\">-<\/span> <span class=\"code-snippet__selector-tag\">rownames<\/span>(<span class=\"code-snippet__selector-tag\">pbmc<\/span>)<\/span><\/code><\/pre>\n<\/section>\n<p><span style=\"font-family: &quot;Helvetica Neue&quot;, Helvetica, &quot;Hiragino Sans GB&quot;, &quot;Microsoft YaHei&quot;, Arial, sans-serif;font-size: 15px;letter-spacing: 0.034em;\">#\u5bf9\u53d8\u5f02\u7279\u5f81\u57fa\u56e0\u8fdb\u884c\u6807\u51c6\u5316\u5904\u7406\uff0c\u4f7f\u6bcf\u4e2a\u57fa\u56e0\u7684\u8868\u8fbe\u91cf\u6709\u4e00\u4e2a\u5747\u503c\u4e3a0\uff0c\u6807\u51c6\u5dee\u4e3a1\u7684\u6b63\u6001\u5206\u5e03\u3002<\/span><span style=\"font-family: &quot;Helvetica Neue&quot;, Helvetica, &quot;Hiragino Sans GB&quot;, &quot;Microsoft YaHei&quot;, Arial, sans-serif;font-size: 15px;letter-spacing: 0.034em;\">\u8fd9\u6837\u53ef\u4ee5\u6d88\u9664\u4e0d\u540c\u57fa\u56e0\u4e4b\u95f4\u7684\u91cf\u7eb2\u5dee\u5f02\uff0c\u4e5f\u53ef\u4ee5\u51cf\u5c11\u5f02\u5e38\u503c\u7684\u5f71\u54cd\u3002<\/span><span style=\"font-family: &quot;Helvetica Neue&quot;, Helvetica, &quot;Hiragino Sans GB&quot;, &quot;Microsoft YaHei&quot;, Arial, sans-serif;font-size: 15px;letter-spacing: 0.034em;\">features\u53c2\u6570\u662f\u6307\u5b9a\u8981\u8fdb\u884c\u6807\u51c6\u5316\u7684\u57fa\u56e0\u5217\u8868\uff0c\u8fd9\u91cc\u662f\u4e4b\u524d\u5b58\u50a8\u7684\u6240\u6709\u57fa\u56e0\u3002<\/span><span style=\"font-family: &quot;Helvetica Neue&quot;, Helvetica, &quot;Hiragino Sans GB&quot;, &quot;Microsoft YaHei&quot;, Arial, sans-serif;font-size: 15px;\"><\/span><\/p>\n<section class=\"code-snippet__fix code-snippet__js\">\n<ul class=\"code-snippet__line-index code-snippet__js\">\n<li><\/li>\n<\/ul>\n<pre class=\"code-snippet__js\" data-lang=\"apache\"><code><span class=\"code-snippet_outer\"><span class=\"code-snippet__attribute\">pbmc<\/span> &lt;- ScaleData(pbmc, features = <span class=\"code-snippet__literal\">all<\/span>.genes)<\/span><\/code><\/pre>\n<\/section>\n<p><span style=\"font-family: &quot;Helvetica Neue&quot;, Helvetica, &quot;Hiragino Sans GB&quot;, &quot;Microsoft YaHei&quot;, Arial, sans-serif;font-size: 15px;letter-spacing: 0.034em;\">#\u964d\u7ef4\u805a\u7c7b<\/span><span style=\"font-family: &quot;Helvetica Neue&quot;, Helvetica, &quot;Hiragino Sans GB&quot;, &quot;Microsoft YaHei&quot;, Arial, sans-serif;font-size: 15px;\"><\/span><\/p>\n<p><span style=\"font-family: &quot;Helvetica Neue&quot;, Helvetica, &quot;Hiragino Sans GB&quot;, &quot;Microsoft YaHei&quot;, Arial, sans-serif;font-size: 15px;\">#\u4f7f\u7528\u4e3b\u6210\u5206\u5206\u6790\uff08principal component analysis\uff09\u5c06\u9ad8\u7ef4\u7684\u6570\u636e\u6295\u5f71\u5230\u4f4e\u7ef4\u7684\u7a7a\u95f4\u4e2d\uff0c\u5f62\u6210\u4e00\u7ec4\u4e92\u76f8\u6b63\u4ea4\u7684\u4e3b\u6210\u5206\uff08principal components\uff09\uff0c\u6bcf\u4e2a\u4e3b\u6210\u5206\u90fd\u4ee3\u8868\u4e86\u6570\u636e\u4e2d\u7684\u4e00\u4e2a\u65b9\u5dee\u6700\u5927\u7684\u65b9\u5411\u3002npcs\u53c2\u6570\u662f\u6307\u5b9a\u8981\u4fdd\u7559\u7684\u4e3b\u6210\u5206\u6570\u76ee\uff0c\u8fd9\u91cc\u662f30\u3002<\/span><\/p>\n<section class=\"code-snippet__fix code-snippet__js\">\n<ul class=\"code-snippet__line-index code-snippet__js\">\n<li><\/li>\n<\/ul>\n<pre class=\"code-snippet__js\" data-lang=\"xml\"><code><span class=\"code-snippet_outer\">pbmc <span class=\"code-snippet__tag\">&lt;<span class=\"code-snippet__name\">-<\/span> <span class=\"code-snippet__attr\">RunPCA<\/span>(<span class=\"code-snippet__attr\">pbmc<\/span>, <span class=\"code-snippet__attr\">npcs<\/span> = <span class=\"code-snippet__string\">50)<\/span><\/span><\/span><\/code><\/pre>\n<\/section>\n<p><span style=\"font-family: &quot;Helvetica Neue&quot;, Helvetica, &quot;Hiragino Sans GB&quot;, &quot;Microsoft YaHei&quot;, Arial, sans-serif;font-size: 15px;letter-spacing: 0.034em;\"># \u6839\u636e\u4e3b\u6210\u5206\u8ba1\u7b97\u6bcf\u4e2a\u7ec6\u80de\u4e0e\u5176\u4ed6\u7ec6\u80de\u4e4b\u95f4\u7684\u76f8\u4f3c\u5ea6\uff0c\u5e76\u6784\u5efa\u4e00\u4e2a\u90bb\u63a5\u77e9\u9635\u3002<\/span><span style=\"font-family: &quot;Helvetica Neue&quot;, Helvetica, &quot;Hiragino Sans GB&quot;, &quot;Microsoft YaHei&quot;, Arial, sans-serif;font-size: 15px;letter-spacing: 0.034em;\">dims\u53c2\u6570\u662f\u6307\u5b9a\u8981\u4f7f\u7528\u7684\u4e3b\u6210\u5206\u8303\u56f4\uff0c\u8fd9\u91cc\u662f1\u523030\u3002<\/span><span style=\"font-family: &quot;Helvetica Neue&quot;, Helvetica, &quot;Hiragino Sans GB&quot;, &quot;Microsoft YaHei&quot;, Arial, sans-serif;font-size: 15px;\"><\/span><\/p>\n<section class=\"code-snippet__fix code-snippet__js\">\n<ul class=\"code-snippet__line-index code-snippet__js\">\n<li><\/li>\n<\/ul>\n<pre class=\"code-snippet__js\" data-lang=\"xml\"><code><span class=\"code-snippet_outer\">pbmc <span class=\"code-snippet__tag\">&lt;<span class=\"code-snippet__name\">-<\/span> <span class=\"code-snippet__attr\">FindNeighbors<\/span>(<span class=\"code-snippet__attr\">pbmc<\/span>, <span class=\"code-snippet__attr\">dims<\/span> = <span class=\"code-snippet__string\">1:30)<\/span><\/span><\/span><\/code><\/pre>\n<\/section>\n<p><span style=\"font-family: &quot;Helvetica Neue&quot;, Helvetica, &quot;Hiragino Sans GB&quot;, &quot;Microsoft YaHei&quot;, Arial, sans-serif;font-size: 15px;letter-spacing: 0.034em;\"># \u6839\u636e\u90bb\u63a5\u77e9\u9635\u5bf9\u7ec6\u80de\u8fdb\u884c\u805a\u7c7b\uff0c\u4e5f\u5c31\u662f\u5c06\u76f8\u4f3c\u5ea6\u9ad8\u7684\u7ec6\u80de\u5212\u5206\u4e3a\u4e00\u4e2a\u7fa4\u4f53\u3002<\/span><span style=\"font-family: &quot;Helvetica Neue&quot;, Helvetica, &quot;Hiragino Sans GB&quot;, &quot;Microsoft YaHei&quot;, Arial, sans-serif;font-size: 15px;letter-spacing: 0.034em;\">resolution\u53c2\u6570\u662f\u6307\u5b9a\u805a\u7c7b\u7684\u7cbe\u5ea6\uff0c\u4e5f\u5c31\u662f\u51b3\u5b9a\u805a\u7c7b\u4e2a\u6570\u7684\u53c2\u6570\uff0c\u6570\u503c\u8d8a\u5927\u805a\u7c7b\u4e2a\u6570\u8d8a\u591a\u3002<\/span><span style=\"font-family: &quot;Helvetica Neue&quot;, Helvetica, &quot;Hiragino Sans GB&quot;, &quot;Microsoft YaHei&quot;, Arial, sans-serif;font-size: 15px;\"><\/span><\/p>\n<section class=\"code-snippet__fix code-snippet__js\">\n<ul class=\"code-snippet__line-index code-snippet__js\">\n<li><\/li>\n<\/ul>\n<pre class=\"code-snippet__js\" data-lang=\"xml\"><code><span class=\"code-snippet_outer\">pbmc <span class=\"code-snippet__tag\">&lt;<span class=\"code-snippet__name\">-<\/span> <span class=\"code-snippet__attr\">FindClusters<\/span>(<span class=\"code-snippet__attr\">pbmc<\/span>, <span class=\"code-snippet__attr\">resolution<\/span> = <span class=\"code-snippet__string\">0.3)<\/span><\/span><\/span><\/code><\/pre>\n<\/section>\n<p><span style=\"font-family: &quot;Helvetica Neue&quot;, Helvetica, &quot;Hiragino Sans GB&quot;, &quot;Microsoft YaHei&quot;, Arial, sans-serif;font-size: 15px;\"># \u5bf9\u805a\u7c7b\u540e\u7684\u6570\u636e\u8fdb\u884cUMAP\uff08uniform manifold approximation and projection\uff09\u4ee5\u4fbf\u4e8e\u5728\u4e8c\u7ef4\u6216\u4e09\u7ef4\u7a7a\u95f4\u4e2d\u53ef\u89c6\u5316\u7ec6\u80de\u7fa4\u4f53\u3002<\/span><\/p>\n<section class=\"code-snippet__fix code-snippet__js\">\n<ul class=\"code-snippet__line-index code-snippet__js\">\n<li><\/li>\n<\/ul>\n<pre class=\"code-snippet__js\" data-lang=\"xml\"><code><span class=\"code-snippet_outer\">pbmc <span class=\"code-snippet__tag\">&lt;<span class=\"code-snippet__name\">-<\/span> <span class=\"code-snippet__attr\">RunUMAP<\/span>(<span class=\"code-snippet__attr\">pbmc<\/span>, <span class=\"code-snippet__attr\">dims<\/span> = <span class=\"code-snippet__string\">1:30)<\/span><\/span><\/span><\/code><\/pre>\n<\/section>\n<p><span style=\"font-family: &quot;Helvetica Neue&quot;, Helvetica, &quot;Hiragino Sans GB&quot;, &quot;Microsoft YaHei&quot;, Arial, sans-serif;font-size: 15px;\"># \u6309\u5206\u7ec4\u548c\u805a\u7c7b\u6570\u76ee\u7ed8\u5236\u7ec4\u522bumap\u56fe &nbsp; &nbsp;<\/span><\/p>\n<section class=\"code-snippet__fix code-snippet__js\">\n<ul class=\"code-snippet__line-index code-snippet__js\">\n<li><\/li>\n<li><\/li>\n<\/ul>\n<pre class=\"code-snippet__js\" data-lang=\"cs\"><code><span class=\"code-snippet_outer\">p1 &lt;- DimPlot(pbmc, reduction = <span class=\"code-snippet__string\">\"umap\"<\/span>,<span class=\"code-snippet__keyword\">group<\/span>.<span class=\"code-snippet__keyword\">by<\/span> = <span class=\"code-snippet__string\">\"group\"<\/span>, pt.size=<span class=\"code-snippet__number\">0.5<\/span>, label = F,repel = TRUE)<\/span><\/code><code><span class=\"code-snippet_outer\">p2 &lt;- DimPlot(pbmc, reduction = <span class=\"code-snippet__string\">\"umap\"<\/span>,<span class=\"code-snippet__keyword\">group<\/span>.<span class=\"code-snippet__keyword\">by<\/span> = <span class=\"code-snippet__string\">\"seurat_clusters\"<\/span>, pt.size=<span class=\"code-snippet__number\">0.5<\/span>, label = F,repel = TRUE)<\/span><\/code><\/pre>\n<\/section>\n<p><img decoding=\"async\" loading=\"lazy\" class=\"rich_pages wxw-img\" data-imgfileid=\"100012438\" data-ratio=\"0.5\" src=\"https:\/\/i0.wp.com\/www.biocloudservice.com\/wordpress\/wp-content\/uploads\/2024\/06\/5_e2a7poVwMFWicDcfVxPku9J5RBPDZA.png?resize=393%2C196\" onerror=\"this.src='https:\/\/mmbiz.qpic.cn\/sz_mmbiz_png\/zcicibWZessAxPqeNQsFjm2HibIuSld9Nh95wRsnZzA7XUvus89Em2tblFFIe2a7poVwMFWicDcfVxPku9J5RBPDZA\/640?wx_fmt=png'\" data-type=\"png\" data-w=\"902\" height=\"196 .66998291015625\" style=\"font-size: var(--articleFontsize);letter-spacing: 0.034em;\" width=\"393 .3399658203125\"  data-recalc-dims=\"1\" \/><span style=\"font-family: &quot;Helvetica Neue&quot;, Helvetica, &quot;Hiragino Sans GB&quot;, &quot;Microsoft YaHei&quot;, Arial, sans-serif;font-size: 15px;\"><\/span><\/p>\n<p><span style=\"font-family: &quot;Helvetica Neue&quot;, Helvetica, &quot;Hiragino Sans GB&quot;, &quot;Microsoft YaHei&quot;, Arial, sans-serif;font-size: 15px;\">\u53ef\u4ee5\u53d1\u73b0\u672a\u7ecf\u6821\u6b63\u7684\u6570\u636e\u96c6\u4e4b\u95f4\u5b58\u5728\u660e\u663e\u5dee\u5f02<\/span><\/p>\n<p><span style=\"font-family: &quot;Helvetica Neue&quot;, Helvetica, &quot;Hiragino Sans GB&quot;, &quot;Microsoft YaHei&quot;, Arial, sans-serif;font-size: 15px;\"># \u4f7f\u7528RunHarmony\u51fd\u6570\u53bb\u6279\u6b21<\/span><\/p>\n<p><span style=\"font-family: &quot;Helvetica Neue&quot;, Helvetica, &quot;Hiragino Sans GB&quot;, &quot;Microsoft YaHei&quot;, Arial, sans-serif;font-size: 15px;\">#\u6309\u7167\u6837\u672c\u7ec4\u522b\u53bb\u6279\u6b21\uff0c\u8fd9\u91cc\u4f7f\u7528\u4e86\u7ba1\u9053\u51fd\u6570%&gt;%\uff0c\u5373\u628a\u51fd\u6570\u5de6\u8fb9\u7684\u503c\u53d1\u7ed9\u53f3\u8fb9\u505a\u540e\u7eed\u5904\u7406\u3002<\/span><\/p>\n<section class=\"code-snippet__fix code-snippet__js\">\n<ul class=\"code-snippet__line-index code-snippet__js\">\n<li><\/li>\n<\/ul>\n<pre class=\"code-snippet__js\" data-lang=\"ini\"><code><span class=\"code-snippet_outer\"><span class=\"code-snippet__attr\">pbmc<\/span> = pbmc %&gt;% RunHarmony(<span class=\"code-snippet__string\">\"group\"<\/span>, plot_convergence = <span class=\"code-snippet__literal\">TRUE<\/span>)<\/span><\/code><\/pre>\n<\/section>\n<p><img decoding=\"async\" loading=\"lazy\" class=\"rich_pages wxw-img\" data-imgfileid=\"100012437\" data-ratio=\"0.877030162412993\" src=\"https:\/\/i0.wp.com\/www.biocloudservice.com\/wordpress\/wp-content\/uploads\/2024\/06\/6_K00iaXY6ibytm8icpXbc7icbj0JzOw.png?resize=206%2C180\" onerror=\"this.src='https:\/\/mmbiz.qpic.cn\/sz_mmbiz_png\/zcicibWZessAxPqeNQsFjm2HibIuSld9Nh92VwCHrFL0m7N1fJ97ia2kuUtIALrvK00iaXY6ibytm8icpXbc7icbj0JzOw\/640?wx_fmt=png'\" data-type=\"png\" data-w=\"431\" height=\"180 .66998291015625\" width=\"206 .0\"  data-recalc-dims=\"1\" \/><img decoding=\"async\" loading=\"lazy\" class=\"rich_pages wxw-img\" data-imgfileid=\"100012442\" data-ratio=\"0.9915611814345991\" src=\"https:\/\/i0.wp.com\/www.biocloudservice.com\/wordpress\/wp-content\/uploads\/2024\/06\/7_9QsJGwAyvPwQYcmDSxlxKHib4EQaOQ.png?resize=250%2C248\" onerror=\"this.src='https:\/\/mmbiz.qpic.cn\/sz_mmbiz_png\/zcicibWZessAxPqeNQsFjm2HibIuSld9Nh9DZXTiakeuJkRofBI40Nsrf4kLC9QsJGwAyvPwQYcmDSxlxKHib4EQaOQ\/640?wx_fmt=png'\" data-type=\"png\" data-w=\"474\" height=\"248 .66998291015625\" width=\"250 .79000854492188\"  data-recalc-dims=\"1\" \/><\/p>\n<p><span style=\"font-family: &quot;Helvetica Neue&quot;, Helvetica, &quot;Hiragino Sans GB&quot;, &quot;Microsoft YaHei&quot;, Arial, sans-serif;font-size: 15px;\">Harmony\u7b97\u6cd5\u5728\u8fdb\u884c\u4e866\u6b21\u8fed\u4ee3\u540e\u6536\u655b\uff0c\u6b64\u65f6\u5b83\u627e\u5230\u4e86\u4e00\u4e2a\u6700\u4f18\u7684\u89e3\u51b3\u65b9\u6848\uff0c\u4f7f\u5f97\u6570\u636e\u96c6\u4e4b\u95f4\u7684\u5dee\u5f02\u6700\u5c0f\u5316\uff0c\u800c\u7ec6\u80de\u7c7b\u578b\u4e4b\u95f4\u7684\u5dee\u5f02\u6700\u5927\u5316\u3002<\/span><\/p>\n<section class=\"code-snippet__fix code-snippet__js\">\n<ul class=\"code-snippet__line-index code-snippet__js\">\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<\/ul>\n<pre class=\"code-snippet__js\" data-lang=\"cs\"><code><span class=\"code-snippet_outer\"><span class=\"code-snippet__meta\">#\u91cd\u590d\u6807\u51c6\u6d41\u7a0b\uff0c\u53c2\u6570\u4e0d\u53d8<\/span><\/span><\/code><code><span class=\"code-snippet_outer\">pbmc2 &lt;- pbmc2 %&gt;%<\/span><\/code><code><span class=\"code-snippet_outer\">  RunUMAP(reduction = <span class=\"code-snippet__string\">\"harmony\"<\/span>, dims = <span class=\"code-snippet__number\">1<\/span>:<span class=\"code-snippet__number\">30<\/span>) %&gt;%<\/span><\/code><code><span class=\"code-snippet_outer\">  FindNeighbors(reduction = <span class=\"code-snippet__string\">\"harmony\"<\/span>, dims = <span class=\"code-snippet__number\">1<\/span>:<span class=\"code-snippet__number\">30<\/span>) %&gt;%    <\/span><\/code><code><span class=\"code-snippet_outer\">  FindClusters(resolution = <span class=\"code-snippet__number\">0.3<\/span>) %&gt;%<\/span><\/code><code><span class=\"code-snippet_outer\">  identity()<\/span><\/code><code><span class=\"code-snippet_outer\"><span class=\"code-snippet__meta\"># \u67e5\u770b\u6821\u6b63\u540e\u7684\u7ed3\u679c<\/span><\/span><\/code><code><span class=\"code-snippet_outer\">p3 &lt;- DimPlot(pbmc, reduction = <span class=\"code-snippet__string\">\"umap\"<\/span>,<span class=\"code-snippet__keyword\">group<\/span>.<span class=\"code-snippet__keyword\">by<\/span> = <span class=\"code-snippet__string\">\"group\"<\/span>, pt.size=<span class=\"code-snippet__number\">0.5<\/span>, label = F,repel = TRUE)<\/span><\/code><code><span class=\"code-snippet_outer\">p4 &lt;- DimPlot(pbmc, reduction = <span class=\"code-snippet__string\">\"umap\"<\/span>,<span class=\"code-snippet__keyword\">group<\/span>.<span class=\"code-snippet__keyword\">by<\/span> = <span class=\"code-snippet__string\">\"seurat_clusters\"<\/span>, pt.size=<span class=\"code-snippet__number\">0.5<\/span>, label = F,repel = TRUE)<\/span><\/code><\/pre>\n<\/section>\n<p><span style=\"font-family: &quot;Helvetica Neue&quot;, Helvetica, &quot;Hiragino Sans GB&quot;, &quot;Microsoft YaHei&quot;, Arial, sans-serif;font-size: 15px;\"><\/span><img decoding=\"async\" loading=\"lazy\" class=\"rich_pages wxw-img\" data-imgfileid=\"100012443\" data-ratio=\"0.5\" src=\"https:\/\/i0.wp.com\/www.biocloudservice.com\/wordpress\/wp-content\/uploads\/2024\/06\/8_cQPBD3dLgicrDIFsDZicBOwGE5SJxA.png?resize=553%2C276\" onerror=\"this.src='https:\/\/mmbiz.qpic.cn\/sz_mmbiz_png\/zcicibWZessAxPqeNQsFjm2HibIuSld9Nh9s2bILcPibM6rbx02GwdY75trhYOcQPBD3dLgicrDIFsDZicBOwGE5SJxA\/640?wx_fmt=png'\" data-type=\"png\" data-w=\"1080\" height=\"276 .8699951171875\" width=\"553 .739990234375\"  data-recalc-dims=\"1\" \/><\/p>\n<p><span style=\"font-family: &quot;Helvetica Neue&quot;, Helvetica, &quot;Hiragino Sans GB&quot;, &quot;Microsoft YaHei&quot;, Arial, sans-serif;font-size: 15px;\">#\u53bb\u6279\u6b21\u540e\u6837\u672c\u5206\u5e03\u7684\u6bd4\u8f83\u4e00\u81f4<\/span><span style=\"font-family: &quot;Helvetica Neue&quot;, Helvetica, &quot;Hiragino Sans GB&quot;, &quot;Microsoft YaHei&quot;, Arial, sans-serif;font-size: 15px;letter-spacing: 0.034em;\"><\/span><\/p>\n<p><span style=\"font-family: &quot;Helvetica Neue&quot;, Helvetica, &quot;Hiragino Sans GB&quot;, &quot;Microsoft YaHei&quot;, Arial, sans-serif;font-size: 15px;\">\u770b\uff0c\u662f\u4e0d\u662f\u975e\u5e38\u7b80\u5355\uff1fHarmony\u5305\u5c31\u662f\u8fd9\u4e48\u795e\u5947\uff0c\u53ef\u4ee5\u8ba9\u4f60\u8f7b\u677e\u5904\u7406\u548c\u6574\u5408\u591a\u4e2a\u7ec4\u5b66\u6570\u636e\u96c6\uff0c\u8ba9\u4f60\u7684\u7814\u7a76\u66f4\u52a0\u987a\u5229\u3002\u4f46\u662f\uff0c\u8bf7\u8bb0\u4f4f\uff0c\u8fd9\u53ea\u662f\u4e00\u4e2a\u57fa\u7840\u7684\u4f7f\u7528\u6559\u7a0b\uff0cHarmony\u5305\u7684\u5f3a\u5927\u529f\u80fd\u8fd8\u6709\u5f88\u591a\u7b49\u7740\u4f60\u53bb\u53d1\u6398\u3002\u6240\u4ee5\uff0c\u5c0f\u4f19\u4f34\u4eec\uff0c\u5982\u679c\u4f60\u4eec\u624b\u5934\u6709\u591a\u4e2a\u7ec4\u5b66\u6570\u636e\u96c6\u9700\u8981\u5904\u7406\uff0c\u90a3\u5c31\u8d76\u5feb\u52a8\u624b\u8bd5\u8bd5\u5427\uff01<\/span><\/p>\n<section powered-by=\"xiumi.us\" style=\"margin-bottom: 0px;letter-spacing: 0.578px;text-wrap: wrap;outline: 0px;font-family: system-ui, -apple-system, BlinkMacSystemFont, &quot;Helvetica Neue&quot;, &quot;PingFang SC&quot;, 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textvalue=\"1.\u642d\u5efa\u751f\u4fe1\u5206\u6790\u6d41\u6c34\u7ebf\uff0c\u5982\u5de5\u5382\u4e00\u683724\u5c0f\u65f6\u8fd0\u8f6cSnakemake\u2014\u2014\u8fdb\u9636\u547d\u4ee4\" linktype=\"text\" imgurl=\"\" imgdata=\"null\" data-itemshowtype=\"0\" tab=\"innerlink\" data-linktype=\"2\" hasload=\"1\" style=\"color: var(--weui-LINK);outline: 0px;cursor: pointer;font-size: 14px;\" rel=\"noopener\">1.\u642d\u5efa\u751f\u4fe1\u5206\u6790\u6d41\u6c34\u7ebf\uff0c\u5982\u5de5\u5382\u4e00\u683724\u5c0f\u65f6\u8fd0\u8f6cSnakemake\u2014\u2014\u8fdb\u9636\u547d\u4ee4<\/a><br style=\"outline: 0px;\"  \/><\/section>\n<section style=\"outline: 0px;letter-spacing: 0.578px;line-height: 1.75em;\"><a target=\"_blank\" href=\"http:\/\/mp.weixin.qq.com\/s?__biz=Mzg3OTg3MjQyNg==&amp;mid=2247491705&amp;idx=1&amp;sn=9ff9b6da28b3a256a99c6697d589be66&amp;chksm=cf7f70bcf808f9aafd1019a0bba3dd3a55e2867dbb9a09203f13c2683adf867094637c405ed1&amp;scene=21#wechat_redirect\" textvalue=\"2.\u6bd4blast\u8fd8\u4f18\u79c0\u7684\u5e8f\u5217\u6bd4\u5bf9\u5de5\u5177\uff1fHMMER\u6765\u4e86\" linktype=\"text\" imgurl=\"\" imgdata=\"null\" data-itemshowtype=\"0\" tab=\"innerlink\" data-linktype=\"2\" hasload=\"1\" style=\"color: var(--weui-LINK);outline: 0px;cursor: pointer;font-size: 14px;\" rel=\"noopener\">2.\u6bd4blast\u8fd8\u4f18\u79c0\u7684\u5e8f\u5217\u6bd4\u5bf9\u5de5\u5177\uff1fHMMER\u6765\u4e86<\/a><\/section>\n<section style=\"outline: 0px;letter-spacing: 0.578px;line-height: 1.75em;\"><a target=\"_blank\" href=\"http:\/\/mp.weixin.qq.com\/s?__biz=Mzg3OTg3MjQyNg==&amp;mid=2247491909&amp;idx=1&amp;sn=902e34bcf53e605fba2b457ec6a33e36&amp;chksm=cf7f7180f808f8961542f458a49da14e85d8831449fb65fbf2623d55affc564686a5422f56fd&amp;scene=21#wechat_redirect\" textvalue=\"3.\u5bf9\u5355\u7ec6\u80de\u5206\u6790\u6beb\u65e0\u5934\u7eea\uff1f\u8ba9popsicleR\u9886\u4f60\u5165\u95e8\" linktype=\"text\" imgurl=\"\" imgdata=\"null\" data-itemshowtype=\"0\" tab=\"innerlink\" data-linktype=\"2\" hasload=\"1\" style=\"color: var(--weui-LINK);outline: 0px;cursor: pointer;font-size: 14px;\" rel=\"noopener\">3.\u5bf9\u5355\u7ec6\u80de\u5206\u6790\u6beb\u65e0\u5934\u7eea\uff1f\u8ba9popsicleR\u9886\u4f60\u5165\u95e8<\/a><\/section>\n<section style=\"outline: 0px;letter-spacing: 0.578px;line-height: 1.75em;\"><a target=\"_blank\" href=\"http:\/\/mp.weixin.qq.com\/s?__biz=Mzg3OTg3MjQyNg==&amp;mid=2247491905&amp;idx=1&amp;sn=fb34ebd6282962c7803badaee7a39096&amp;chksm=cf7f7184f808f8929608c0050344ad86193d0fc6455c1c18e16cc17bf4b37832b63d3b18284e&amp;scene=21#wechat_redirect\" textvalue=\"4.\u5c0f\u679c\u5e26\u4f60\u7ed8\u5236ROC\u66f2\u7ebf\u8bc4\u4f30\u751f\u5b58\u9884\u6d4b\u80fd\u529b\" linktype=\"text\" imgurl=\"\" imgdata=\"null\" data-itemshowtype=\"0\" tab=\"innerlink\" data-linktype=\"2\" hasload=\"1\" style=\"color: var(--weui-LINK);outline: 0px;cursor: pointer;\" rel=\"noopener\"><span style=\"outline: 0px;font-size: 14px;\">4.\u5c0f\u679c\u5e26\u4f60\u7ed8\u5236ROC\u66f2\u7ebf\u8bc4\u4f30\u751f\u5b58\u9884\u6d4b\u80fd\u529b<\/span><\/a><\/section>\n<section style=\"outline: 0px;letter-spacing: 0.578px;line-height: 1.75em;\"><a target=\"_blank\" href=\"http:\/\/mp.weixin.qq.com\/s?__biz=Mzg3OTg3MjQyNg==&amp;mid=2247493633&amp;idx=1&amp;sn=2263dfe7572c0bcf6816c2c1a37d79de&amp;chksm=cf7f78c4f808f1d2209321d6ace39fde5fa60c0691b56f88eac21916f5a2872ce8ee345f1d5f&amp;scene=21#wechat_redirect\" textvalue=\"\u8f6f\u4ef6\u5305\u5b89\u88c5\u3001\u6253\u602a\u5feb\u53c8\u597d\uff0c1024G\u5b58\u50a8\u7684\u751f\u4fe1\u670d\u52a1\u5668\uff1b\u8fd8\u6709\u6bd4\u8fd9\u66f4\u7701\u94b1\u7684\u561b\uff01\uff01\uff01\" linktype=\"text\" imgurl=\"\" imgdata=\"null\" data-itemshowtype=\"0\" tab=\"innerlink\" data-linktype=\"2\" hasload=\"1\" style=\"color: var(--weui-LINK);outline: 0px;cursor: pointer;letter-spacing: 0.578px;font-size: 14px;\" rel=\"noopener\">5.\u8f6f\u4ef6\u5305\u5b89\u88c5\u3001\u6253\u602a\u5feb\u53c8\u597d\uff0c1024G\u5b58\u50a8\u7684\u751f\u4fe1\u670d\u52a1\u5668\uff1b\u8fd8\u6709\u6bd4\u8fd9\u66f4\u7701\u94b1\u7684\u561b\uff01\uff01\uff01<\/a><span style=\"letter-spacing: 0.578px;text-align: center;font-family: mp-quote, -apple-system-font, BlinkMacSystemFont, &quot;Helvetica Neue&quot;, &quot;PingFang SC&quot;, &quot;Hiragino Sans GB&quot;, &quot;Microsoft YaHei UI&quot;, &quot;Microsoft YaHei&quot;, Arial, sans-serif;font-size: var(--articleFontsize);\"><\/span><\/section>\n<\/section>\n<\/section>\n<\/section>\n<\/section>\n<\/section>\n<p style=\"margin-top: 0pt;margin-bottom: 0pt;margin-left: 0pt;letter-spacing: 0.578px;text-indent: 0pt;text-wrap: wrap;text-align: left;line-height: normal;font-size: 12pt;font-family: helvetica;color: rgb(0, 0, 0);break-after: auto;\"><span style=\"font-family: \u5b8b\u4f53;font-size: 12pt;text-indent: 0pt;color: rgba(0, 0, 0, 0.9);letter-spacing: 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none;\"><mp-style-type data-value=\"3\"><\/mp-style-type><\/p>\n<p><\/content>\n<\/div>\n<p><\/body><br \/>\n<\/html><\/p>\n","protected":false},"excerpt":{"rendered":"<p>\u60f3\u8981\u4e00\u952e\u641e\u5b9a\u6240\u6709\u5355\u7ec6\u80de\u6570\u636e\u7684\u6279\u6b21\u6548\u5e94\uff1f\u9664\u975e\u4f60\u7528Harmony \u539f\u521b&nbsp;&nbsp;\u5c0f\u679c&nbsp;&#038;n 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