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initial;border-style: none;border-color: initial;border-collapse: collapse;width: 100%;\">\n<thead>\n<tr>\n<td width=\"528\" valign=\"top\" style=\"border-top:none;border-left:none;border-bottom:none;border-right:none;padding:0pt 5.4pt 0pt 5.4pt;\">\n<p style=\"\"><span style=\"font-family: Cambria;font-variant: normal;text-transform: none;font-size: 15px;\">source<\/span><\/p>\n<\/td>\n<\/tr>\n<\/thead>\n<tbody>\n<tr>\n<td width=\"528\" valign=\"top\" style=\"border-top:none;border-left:none;border-bottom:none;border-right:none;padding:0pt 5.4pt 0pt 5.4pt;\">\n<p style=\"\"><span style=\"font-family: Cambria;font-variant: normal;text-transform: none;font-size: 15px;\">B<\/span><\/p>\n<\/td>\n<\/tr>\n<tr>\n<td width=\"528\" valign=\"top\" style=\"border-top:none;border-left:none;border-bottom:none;border-right:none;padding:0pt 5.4pt 0pt 5.4pt;\">\n<p style=\"\"><span style=\"font-family: Cambria;font-variant: normal;text-transform: none;font-size: 15px;\">B<\/span><\/p>\n<\/td>\n<\/tr>\n<tr>\n<td width=\"528\" valign=\"top\" style=\"border-top:none;border-left:none;border-bottom:none;border-right:none;padding:0pt 5.4pt 0pt 5.4pt;\">\n<p style=\"\"><span style=\"font-family: Cambria;font-variant: normal;text-transform: none;font-size: 15px;\">CD8 T<\/span><\/p>\n<\/td>\n<\/tr>\n<tr>\n<td width=\"528\" valign=\"top\" style=\"border-top:none;border-left:none;border-bottom:none;border-right:none;padding:0pt 5.4pt 0pt 5.4pt;\">\n<p style=\"\"><span style=\"font-family: Cambria;font-variant: normal;text-transform: none;font-size: 15px;\">B<\/span><\/p>\n<\/td>\n<\/tr>\n<tr>\n<td width=\"528\" valign=\"top\" style=\"border-top:none;border-left:none;border-bottom:none;border-right:none;padding:0pt 5.4pt 0pt 5.4pt;\">\n<p style=\"\"><span style=\"font-family: Cambria;font-variant: normal;text-transform: none;font-size: 15px;\">NK<\/span><\/p>\n<\/td>\n<\/tr>\n<tr>\n<td width=\"528\" valign=\"top\" style=\"border-top:none;border-left:none;border-bottom:none;border-right:none;padding:0pt 5.4pt 0pt 5.4pt;\">\n<p style=\"\"><span style=\"font-family: Cambria;font-variant: normal;text-transform: none;font-size: 15px;\">B<\/span><\/p>\n<\/td>\n<\/tr>\n<\/tbody>\n<\/table>\n<p style=\"margin-top: 9.0pt;margin-bottom: 9.0pt;text-align: left;margin-left: 0.0pt;text-indent: 0.0pt;line-height: normal;mso-pagination: widow-orphan;font-size: 12.0pt;font-family: Cambria;mso-fareast-font-family: 'Cambria';mso-fareast-language: EN-US;font-weight: normal;mso-bidi-font-weight: normal;\"><span style=\"font-size: 15px;\"><span style=\"font-family: Cambria;font-variant: normal;text-transform: none;\">\u5bf9\u4e8e\u67d0\u4e9b\u56fe\uff0c\u8fd8\u53ef\u4ee5\u9009\u62e9\u663e\u793a\u6bcf\u79cd\u7ec6\u80de\u7c7b\u578b\u4e2d\u7684\u914d\u4f53\u548c\u53d7\u4f53\u7684\u8868\u8fbe\u3002\u5bf9\u4e8e\u8fd9\u4e9b\u56fe\uff0c\u9700\u8981\u7b2c\u4e8c\u4e2a\u6570\u636e\u6846\uff0c\u5b83\u5305\u542b\u6bcf\u79cd\u7ec6\u80de\u7c7b\u578b\u4e2d\u6bcf\u4e2a\u57fa\u56e0\u7684\u5e73\u5747\u8868\u8fbe\u503c\uff0c\u770b\u8d77\u6765\u5e94\u8be5\u50cf\u8fd9\u6837\uff1a<\/span>    <\/span><o:page><\/o:page><\/p>\n<table border=\"1\" cellspacing=\"0\" cellpadding=\"0\" style=\"margin-left: 0px;border-width: initial;border-style: none;border-color: initial;border-collapse: collapse;width: 100%;\">\n<thead>\n<tr>\n<td width=\"528\" valign=\"top\" style=\"border-top:none;border-left:none;border-bottom:none;border-right:none;padding:0pt 5.4pt 0pt 5.4pt;\">\n<p style=\"\"><span style=\"font-family: Cambria;font-variant: normal;text-transform: none;font-size: 15px;\">cell_type<\/span><\/p>\n<\/td>\n<\/tr>\n<\/thead>\n<tbody>\n<tr>\n<td width=\"528\" valign=\"top\" style=\"border-top:none;border-left:none;border-bottom:none;border-right:none;padding:0pt 5.4pt 0pt 5.4pt;\">\n<p style=\"\"><span style=\"font-family: Cambria;font-variant: normal;text-transform: none;font-size: 15px;\">B<\/span><\/p>\n<\/td>\n<\/tr>\n<tr>\n<td width=\"528\" valign=\"top\" style=\"border-top:none;border-left:none;border-bottom:none;border-right:none;padding:0pt 5.4pt 0pt 5.4pt;\">\n<p style=\"\"><span style=\"font-family: Cambria;font-variant: normal;text-transform: none;font-size: 15px;\">B<\/span><\/p>\n<\/td>\n<\/tr>\n<tr>\n<td width=\"528\" valign=\"top\" style=\"border-top:none;border-left:none;border-bottom:none;border-right:none;padding:0pt 5.4pt 0pt 5.4pt;\">\n<p style=\"\"><span style=\"font-family: Cambria;font-variant: normal;text-transform: none;font-size: 15px;\">B<\/span><\/p>\n<\/td>\n<\/tr>\n<tr>\n<td width=\"528\" valign=\"top\" style=\"border-top:none;border-left:none;border-bottom:none;border-right:none;padding:0pt 5.4pt 0pt 5.4pt;\">\n<p style=\"\"><span style=\"font-family: Cambria;font-variant: normal;text-transform: none;font-size: 15px;\">B<\/span><\/p>\n<\/td>\n<\/tr>\n<tr>\n<td width=\"528\" valign=\"top\" style=\"border-top:none;border-left:none;border-bottom:none;border-right:none;padding:0pt 5.4pt 0pt 5.4pt;\">\n<p style=\"\"><span style=\"font-family: Cambria;font-variant: normal;text-transform: none;font-size: 15px;\">B<\/span><\/p>\n<\/td>\n<\/tr>\n<tr>\n<td width=\"528\" valign=\"top\" style=\"border-top:none;border-left:none;border-bottom:none;border-right:none;padding:0pt 5.4pt 0pt 5.4pt;\">\n<p style=\"\"><span style=\"font-family: Cambria;font-variant: normal;text-transform: none;font-size: 15px;\">B<\/span><\/p>\n<\/td>\n<\/tr>\n<\/tbody>\n<\/table>\n<p style=\"margin-top: 9.0pt;margin-bottom: 9.0pt;text-align: left;margin-left: 0.0pt;text-indent: 0.0pt;line-height: normal;mso-pagination: widow-orphan;font-size: 12.0pt;font-family: Cambria;mso-fareast-font-family: 'Cambria';mso-fareast-language: EN-US;font-weight: normal;mso-bidi-font-weight: normal;\"><span style=\"font-family: Cambria;font-variant: normal;text-transform: none;font-size: 15px;\">\u8be5\u5305\u9644\u5e26\u793a\u4f8b\u6570\u636e\u96c6(‘toy_data’\uff0c ‘toy_exp’)\uff0c\u5927\u5bb6\u53ef\u4ee5\u770b\u770b~<\/span><\/p>\n<p><span style=\"color: rgb(2, 30, 170);color: rgb(2, 30, 170);font-size: 15px;\"><strong>\u5b89\u88c5<\/strong><\/span><\/p>\n<p><span style=\"font-family: Cambria;font-variant: normal;text-transform: none;font-size: 15px;\">\u53ef\u4ee5\u901a\u8fc7\u4ee5\u4e0b\u547d\u4ee4\u6765\u5b89\u88c5R\u5305\uff1a<\/span><\/p>\n<section class=\"code-snippet__fix code-snippet__js\">\n<ul class=\"code-snippet__line-index code-snippet__js\">\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<\/ul>\n<pre class=\"code-snippet__js\" data-lang=\"php\"><code><span class=\"code-snippet_outer\"><span class=\"code-snippet__comment\"># install development version <\/span><\/span><\/code><code><span class=\"code-snippet_outer\">devtools::install_github(<span class=\"code-snippet__string\">\"Sarah145\/CCPlotR\"<\/span>) <\/span><\/code><code><span class=\"code-snippet_outer\"><br \/><\/span><\/code><code><span class=\"code-snippet_outer\"><br \/><\/span><\/code><code><span class=\"code-snippet_outer\"> <\/span><\/code><code><span class=\"code-snippet_outer\"><span class=\"code-snippet__comment\"># or install from Bioconductor <\/span><\/span><\/code><code><span class=\"code-snippet_outer\"><span class=\"code-snippet__keyword\">if<\/span> (!requireNamespace(<span class=\"code-snippet__string\">\"BiocManager\"<\/span>, quietly =<span class=\"code-snippet__keyword\">TRUE<\/span>)) { <\/span><\/code><code><span class=\"code-snippet_outer\"> install.packages(<span class=\"code-snippet__string\">\"BiocManager\"<\/span>) <\/span><\/code><code><span class=\"code-snippet_outer\">} <\/span><\/code><code><span class=\"code-snippet_outer\"><br \/><\/span><\/code><code><span class=\"code-snippet_outer\"><br \/><\/span><\/code><code><span class=\"code-snippet_outer\"> <\/span><\/code><code><span class=\"code-snippet_outer\">BiocManager::install(<span class=\"code-snippet__string\">\"CCPlotR\"<\/span>)<\/span><\/code><\/pre>\n<\/section>\n<section style=\"font-size: 16px;margin-bottom: 0px;\">\n<section style=\"text-align: left;justify-content: flex-start;display: flex;flex-flow: row;margin-top: 10px;margin-bottom: 10px;\" powered-by=\"xiumi.us\">\n<section style=\"display: inline-block;width: 100%;vertical-align: top;align-self: flex-start;flex: 0 0 auto;background-color: rgb(69, 107, 176);padding-right: 6px;padding-bottom: 6px;padding-left: 6px;\">\n<section style=\"margin-top: 10px;margin-bottom: 10px;transform: translate3d(19px, 0px, 0px);\" powered-by=\"xiumi.us\">\n<section style=\"text-align: justify;color: rgb(255, 255, 255);\">\n<p style=\"text-wrap: wrap;\"><br \/><\/p>\n<\/section>\n<\/section>\n<section style=\"justify-content: flex-start;display: flex;flex-flow: row;\" powered-by=\"xiumi.us\">\n<section style=\"display: inline-block;width: 100%;vertical-align: top;align-self: flex-start;flex: 0 0 auto;background-color: rgb(255, 255, 255);padding: 23px;\">\n<section style=\"text-align: justify;\" powered-by=\"xiumi.us\">\n<p style=\"margin-bottom: 0px;letter-spacing: 0.578px;text-wrap: wrap;font-size: 16px;background-color: rgb(255, 255, 255);\">\u516c\u4f17\u53f7\u540e\u53f0\u56de\u590d<span style=\"color: rgb(255, 41, 65);\">\u201c111\u201d<\/span>\u9886\u53d6\u672c\u7bc7\u4ee3\u7801\u3001\u57fa\u56e0\u96c6\u6216\u793a\u4f8b\u6570\u636e\u7b49\u6587\u4ef6\uff1b<\/p>\n<p style=\"margin-bottom: 0px;letter-spacing: 0.578px;text-wrap: wrap;font-size: 16px;background-color: rgb(255, 255, 255);\"><span style=\"text-decoration: underline;color: rgb(255, 41, 65);\"><em><strong>\u6587\u4ef6\u7f16\u53f7\uff1a231208<\/strong><\/em><\/span><\/p>\n<p style=\"margin-bottom: 0px;letter-spacing: 0.578px;text-wrap: wrap;font-size: 16px;background-color: rgb(255, 255, 255);\"><strong><span style=\"color: rgb(255, 41, 65);\">\u679c\u7c89\u798f\u5229<\/span><\/strong><span style=\"color: rgb(0, 128, 255);\"><strong>\uff1a\u751f\u4fe1\u4eba\u5fc5\u5907\u795e\u5668\u2014\u2014\u670d\u52a1\u5668<\/strong><\/span><br \/><\/p>\n<p style=\"margin-bottom: 0px;letter-spacing: 0.578px;text-wrap: wrap;font-size: 16px;background-color: rgb(255, 255, 255);\">\u5e73\u65f6\u751f\u4fe1\u5206\u6790\u5b66\u4e60\u4e2d\u6709\u8981\u7684\u5c0f\u4f19\u4f34\u53ef\u4ee5\u8054\u7cfb\u5c0f\u679c\u79df\u8d41\uff0c\u7c89\u4e1d\u798f\u5229\u90fd\u662f\u5e02\u573a\u8d85\u4f4e\u4ef7\u683c\uff0c\u8d76\u5feb\u627e\u5c0f\u679c\u9886\u53d6\u514d\u8d39\u7684\u8bd5\u7528\u8d26\u53f7\u5427\uff01<\/p>\n<p style=\"margin-bottom: 0px;letter-spacing: 0.578px;text-wrap: wrap;font-size: 16px;background-color: rgb(255, 255, 255);\"><a target=\"_blank\" href=\"http:\/\/mp.weixin.qq.com\/s?__biz=Mzg3OTg3MjQyNg==&mid=2247495825&idx=2&sn=a22a72496a1c082ea5b827be94ce4d99&chksm=cf7f6054f808e94264e14bfed4359cab3fcaaca249952a9f761c37ece352dcd7108579788b89&scene=21#wechat_redirect\" textvalue=\"\u670d\u52a1\u5668\u4ef7\u683c\u914d\u7f6e\u8868\uff08\u70b9\u51fb\u94fe\u63a5\u67e5\u770b\uff09\" linktype=\"text\" imgurl=\"\" imgdata=\"null\" data-itemshowtype=\"0\" tab=\"innerlink\" data-linktype=\"2\" rel=\"noopener\">\u670d\u52a1\u5668\u4ef7\u683c\u914d\u7f6e\u8868\uff08\u70b9\u51fb\u94fe\u63a5\u67e5\u770b\uff09<\/a><\/p>\n<\/section>\n<\/section>\n<\/section>\n<\/section>\n<\/section>\n<\/section>\n<p><span style=\"color: rgb(2, 30, 170);color: rgb(2, 30, 170);font-size: 15px;\"><strong>\u53ef\u89c6\u5316\u7c7b\u578b<\/strong><\/span><br \/><\/p>\n<p><span style=\"font-size: 15px;\"><span style=\"font-family: Cambria;font-variant: normal;text-transform: none;\">\u8be5\u5305\u5305\u542b\u7528\u4e8e\u751f\u6210\u516d\u79cd\u7c7b\u578b\u7684\u56fe\u7684\u51fd\u6570\uff1a<\/span>cc_heatmap\uff0ccc_dotplot\uff0ccc_network\uff0ccc_circos\uff0ccc_arrow<span style=\"font-family: Cambria;font-variant: normal;text-transform: none;\">\u548c<\/span>cc_sigmoid<span style=\"font-family: Cambria;font-variant: normal;text-transform: none;\">\u3002\u4e0b\u9762\u662f\u6bcf\u79cd\u56fe\u5f62\u7c7b\u578b\u7684\u4e00\u4e9b\u793a\u4f8b\u3002<\/span><\/span><\/p>\n<p><span style=\"color: rgb(2, 30, 170);color: rgb(2, 30, 170);font-size: 15px;\"><strong>\u70ed\u56fe\uff08cc_heatmap\uff09<\/strong><\/span><\/p>\n<p><span style=\"font-family: Cambria;font-variant: normal;text-transform: none;font-size: 15px;\">\u6b64\u51fd\u6570\u53ef\u4ee5\u751f\u6210\u56db\u79cd\u4e0d\u540c\u6837\u5f0f\u7684\u70ed\u56fe\u3002\u9009\u9879A\u4ec5\u663e\u793a\u6bcf\u5bf9\u7ec6\u80de\u7c7b\u578b\u4e4b\u95f4\u7684\u76f8\u4e92\u4f5c\u7528\u603b\u6570\uff0c\u800c\u9009\u9879B\u663e\u793a\u53c2\u4e0e\u6bcf\u4e2a\u76f8\u4e92\u4f5c\u7528\u7684\u914d\u4f53\u3001\u53d7\u4f53\u548c\u7ec6\u80de\u7c7b\u578b\u4ee5\u53ca\u5b83\u4eec\u7684\u5206\u6570\u3002\u4e3a\u4e86\u907f\u514d\u56fe\u5f62\u6df7\u4e71\uff0c\u9009\u9879B\u4ec5\u663e\u793a\u4e00\u5c0f\u90e8\u5206\u6700\u76f8\u5173\u7684\u76f8\u4e92\u4f5c\u7528\u3002\u8fd8\u6709\u4e00\u9879\u9009\u9879\uff0c\u4ee5CellPhoneDB\u548cLiana\u7b49\u6d41\u884c\u7684\u7ec6\u80de\u95f4\u76f8\u4e92\u4f5c\u7528\u9884\u6d4b\u5de5\u5177\u7684\u98ce\u683c\u751f\u6210\u70ed\u56fe\u3002<\/span><\/p>\n<section class=\"code-snippet__fix code-snippet__js\">\n<ul class=\"code-snippet__line-index code-snippet__js\">\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<\/ul>\n<pre class=\"code-snippet__js\" data-lang=\"kotlin\"><code><span class=\"code-snippet_outer\">library(CCPlotR) <\/span><\/code><code><span class=\"code-snippet_outer\"><span class=\"code-snippet__keyword\">data<\/span>(toy_data, toy_exp, <span class=\"code-snippet__keyword\">package<\/span> =<span class=\"code-snippet__string\">'CCPlotR'<\/span>) <\/span><\/code><code><span class=\"code-snippet_outer\">cc_heatmap(toy_data) <\/span><\/code><code><span class=\"code-snippet_outer\">cc_heatmap(toy_data, option =<span class=\"code-snippet__string\">'B'<\/span>, n_top_ints =<span class=\"code-snippet__number\">10<\/span>) <\/span><\/code><code><span class=\"code-snippet_outer\">cc_heatmap(toy_data, option =<span class=\"code-snippet__string\">'CellPhoneDB'<\/span>)<\/span><\/code><\/pre>\n<\/section>\n<p style=\"mso-style-name: 'Source Code';margin-top: 0.0pt;margin-bottom: 10.0pt;text-align: left;margin-left: 0.0pt;text-indent: 0.0pt;line-height: normal;mso-pagination: widow-orphan;word-break: break-all;font-size: 12.0pt;font-family: Cambria;mso-fareast-font-family: 'Cambria';mso-fareast-language: EN-US;font-weight: normal;mso-bidi-font-weight: normal;\"><span style=\"font-size: 15px;\"><\/span><o:page><\/o:page><\/p>\n<p><span style=\"font-family: Cambria;font-variant: normal;text-transform: none;font-size: 15px;\"><img decoding=\"async\" loading=\"lazy\" class=\"rich_pages wxw-img\" data-imgfileid=\"100014413\" data-ratio=\"1.9\" src=\"https:\/\/i0.wp.com\/www.biocloudservice.com\/wordpress\/wp-content\/uploads\/2024\/06\/3_ehJTU1dm92EiaFwRahQF2icibVc27Q.png?resize=560%2C1064\" onerror=\"this.src='https:\/\/mmbiz.qpic.cn\/sz_mmbiz_png\/zcicibWZessAwaOtnqQlN0kicqNFL8Q1tVSWNg54H39EOjjh5EYPTkCVEaagt4ehJTU1dm92EiaFwRahQF2icibVc27Q\/640?wx_fmt=png'\" data-type=\"png\" data-w=\"1080\" height=\"1064 .02001953125\" width=\"560 .010009765625\" data-recalc-dims=\"1\" \/><\/span><span style=\"font-size: 15px;\">   <\/span><o:page><\/o:page><\/p>\n<p><span style=\"color: rgb(2, 30, 170);color: rgb(2, 30, 170);font-size: 15px;\"><strong><img decoding=\"async\" class=\"rich_pages wxw-img\" data-galleryid=\"\" data-imgfileid=\"100014486\" data-ratio=\"0.38981481481481484\" data-s=\"300,640\" src=\"https:\/\/i0.wp.com\/www.biocloudservice.com\/wordpress\/wp-content\/uploads\/2024\/06\/4_IWicymEetCc6Enf2BkUE4Yz1Ya5e5w-9.png?w=640\" onerror=\"this.src='https:\/\/mmbiz.qpic.cn\/sz_mmbiz_png\/zcicibWZessAyuYsqlJnQUJvnS2iciaDibtfbdV0VmHlriaSjYwjFPLp1BLjokHIWicymEetCc6Enf2BkUE4Yz1Ya5e5w\/640?wx_fmt=png'\" data-type=\"png\" data-w=\"1080\" style=\"letter-spacing: 0.578px;text-wrap: wrap;color: rgb(34, 34, 38);font-family: "Times New Roman";font-size: 15px;font-weight: 700;background-color: rgb(255, 255, 255);text-align: center;\" data-recalc-dims=\"1\" \/>\u70b9\u56fe\uff08cc_dotplot\uff09<\/strong><\/span><\/p>\n<p><span style=\"font-family: Cambria;font-variant: normal;text-transform: none;font-size: 15px;\">\u8be5\u51fd\u6570\u53ef\u4ee5\u751f\u6210\u56db\u79cd\u4e0d\u540c\u6837\u5f0f\u7684\u70b9\u56fe\u3002\u9009\u9879A\u4ec5\u663e\u793a\u6bcf\u79cd\u7ec6\u80de\u7c7b\u578b\u5bf9\u4e4b\u95f4\u7684\u76f8\u4e92\u4f5c\u7528\u603b\u6570\uff0c\u800c\u9009\u9879B\u663e\u793a\u53c2\u4e0e\u6bcf\u79cd\u76f8\u4e92\u4f5c\u7528\u7684\u914d\u4f53\u3001\u53d7\u4f53\u548c\u7ec6\u80de\u7c7b\u578b\u4ee5\u53ca\u5b83\u4eec\u7684\u76f8\u4e92\u4f5c\u7528\u5206\u6570\u3002\u4e3a\u907f\u514d\u56fe\u5f62\u6df7\u4e71\uff0c\u5728\u9009\u9879B\u4e2d\u4ec5\u663e\u793a\u4e00\u5c0f\u90e8\u5206\u9ad8\u76f8\u4e92\u4f5c\u7528\u3002\u6b64\u5916\uff0c\u8fd8\u6709\u4e00\u79cd\u9009\u9879\u53ef\u4ee5\u751f\u6210\u7c7b\u4f3c\u4e8e\u5e7f\u53d7\u6b22\u8fce\u7684\u7ec6\u80de\u95f4\u76f8\u4e92\u4f5c\u7528\u9884\u6d4b\u5de5\u5177CellPhoneDB\u548cLiana\u7684\u70b9\u56fe\u6837\u5f0f\u3002<\/span><\/p>\n<section class=\"code-snippet__fix code-snippet__js\">\n<ul class=\"code-snippet__line-index code-snippet__js\">\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<\/ul>\n<pre class=\"code-snippet__js\" data-lang=\"javascript\"><code><span class=\"code-snippet_outer\">cc_dotplot(toy_data) <\/span><\/code><code><span class=\"code-snippet_outer\">cc_dotplot(toy_data, option =<span class=\"code-snippet__string\">'B'<\/span>, n_top_ints =<span class=\"code-snippet__number\">10<\/span>) <\/span><\/code><code><span class=\"code-snippet_outer\">cc_dotplot(toy_data, option =<span class=\"code-snippet__string\">'Liana'<\/span>, n_top_ints =<span class=\"code-snippet__number\">15<\/span>)<\/span><\/code><\/pre>\n<\/section>\n<p style=\"mso-style-name: 'Source Code';margin-top: 0.0pt;margin-bottom: 10.0pt;text-align: left;margin-left: 0.0pt;text-indent: 0.0pt;line-height: normal;mso-pagination: widow-orphan;word-break: break-all;font-size: 12.0pt;font-family: Cambria;mso-fareast-font-family: 'Cambria';mso-fareast-language: EN-US;font-weight: normal;mso-bidi-font-weight: normal;\"><span style=\"font-size: 15px;\"> <\/span><o:page><\/o:page><\/p>\n<p><span style=\"font-family: Cambria;font-variant: normal;text-transform: none;font-size: 15px;\"><img decoding=\"async\" loading=\"lazy\" class=\"rich_pages wxw-img\" data-imgfileid=\"100014415\" data-ratio=\"1.375\" src=\"https:\/\/i0.wp.com\/www.biocloudservice.com\/wordpress\/wp-content\/uploads\/2024\/06\/5_0VfJZKJyPa7G0Z2VwkibREDws8Ruxw.png?resize=560%2C770\" onerror=\"this.src='https:\/\/mmbiz.qpic.cn\/sz_mmbiz_png\/zcicibWZessAwaOtnqQlN0kicqNFL8Q1tVSzvC4gQSGZviaanbuZoXGclibMbx0VfJZKJyPa7G0Z2VwkibREDws8Ruxw\/640?wx_fmt=png'\" data-type=\"png\" data-w=\"1080\" height=\"770 .010009765625\" width=\"560 .010009765625\" data-recalc-dims=\"1\" \/><\/span><span style=\"font-size: 15px;\">    <\/span><o:page><\/o:page><\/p>\n<p><span style=\"color: rgb(2, 30, 170);color: rgb(2, 30, 170);font-size: 15px;\"><strong>\u7f51\u7edc\uff08cc_network\uff09<\/strong><\/span><\/p>\n<p><span style=\"font-family: Cambria;font-variant: normal;text-transform: none;font-size: 15px;\">\u6b64\u51fd\u6570\u53ef\u4ee5\u751f\u6210\u4e24\u79cd\u4e0d\u540c\u7c7b\u578b\u7f51\u7edc\u56fe\u3002\u5728\u9009\u9879A\u4e2d\uff0c\u8282\u70b9\u4ee3\u8868\u7ec6\u80de\u7c7b\u578b\uff0c\u8fb9\u6743\u91cd\u5bf9\u5e94\u4e8e\u7ed9\u5b9a\u7ec6\u80de\u7c7b\u578b\u5bf9\u4e4b\u95f4\u7684\u603b\u4ea4\u4e92\u6570\u3002\u5728\u9009\u9879B\u4e2d\uff0c\u8282\u70b9\u662f\u914d\u4f53\u548c\u53d7\u4f53\u57fa\u56e0\uff0c\u4f9d\u636e\u8868\u8fbe\u5b83\u4eec\u7684\u7ec6\u80de\u7c7b\u578b\u8fdb\u884c\u7740\u8272\u3002\u5bf9\u4e8e\u9009\u9879B\uff0c\u4ec5\u663e\u793a\u5c11\u91cf\u6700\u76f8\u5173\u7684\u4ea4\u4e92\u4f5c\u7528\u4ee5\u907f\u514d\u56fe\u5f62\u6df7\u4e71\u3002<\/span><span style=\"color: rgb(6, 40, 126);font-family: Consolas;font-size: 15px;text-align: left;text-indent: 0pt;letter-spacing: 0.034em;\"><\/span><\/p>\n<section class=\"code-snippet__fix code-snippet__js\">\n<ul class=\"code-snippet__line-index code-snippet__js\">\n<li><\/li>\n<li><\/li>\n<\/ul>\n<pre class=\"code-snippet__js\" data-lang=\"javascript\"><code><span class=\"code-snippet_outer\">cc_network(toy_data) <\/span><\/code><code><span class=\"code-snippet_outer\">cc_network(toy_data, colours =c(<span class=\"code-snippet__string\">'orange'<\/span>, <span class=\"code-snippet__string\">'cornflowerblue'<\/span>, <span class=\"code-snippet__string\">'hotpink'<\/span>), option =<span class=\"code-snippet__string\">'B'<\/span>)<\/span><\/code><\/pre>\n<\/section>\n<p style=\"mso-style-name: 'Source Code';margin-top: 0.0pt;margin-bottom: 10.0pt;text-align: left;margin-left: 0.0pt;text-indent: 0.0pt;line-height: normal;mso-pagination: widow-orphan;word-break: break-all;font-size: 12.0pt;font-family: Cambria;mso-fareast-font-family: 'Cambria';mso-fareast-language: EN-US;font-weight: normal;mso-bidi-font-weight: normal;\"><span style=\"font-size: 15px;\"><\/span><o:page><\/o:page><\/p>\n<p><span style=\"font-family: Cambria;font-variant: normal;text-transform: none;font-size: 15px;\"><img decoding=\"async\" loading=\"lazy\" class=\"rich_pages wxw-img\" data-imgfileid=\"100014412\" data-ratio=\"1.5074074074074073\" src=\"https:\/\/i0.wp.com\/www.biocloudservice.com\/wordpress\/wp-content\/uploads\/2024\/06\/6_WupG9f9NTZdmLTGXDwvNG2uXSP2C7A.png?resize=560%2C844\" onerror=\"this.src='https:\/\/mmbiz.qpic.cn\/sz_mmbiz_png\/zcicibWZessAwaOtnqQlN0kicqNFL8Q1tVSba2nF4Udro8e8g4sN6yIQBFoWupG9f9NTZdmLTGXDwvNG2uXSP2C7A\/640?wx_fmt=png'\" data-type=\"png\" data-w=\"1080\" height=\"844 .3200073242188\" width=\"560 .010009765625\" data-recalc-dims=\"1\" \/><\/span><span style=\"font-size: 15px;\">   <\/span><o:page><\/o:page><\/p>\n<p><span style=\"color: rgb(2, 30, 170);color: rgb(2, 30, 170);font-size: 15px;\"><strong>\u5f26\u56fe (cc_circos)<\/strong><\/span><\/p>\n<p><span style=\"font-family: Cambria;font-variant: normal;text-transform: none;font-size: 15px;\">\u8be5\u51fd\u6570\u53ef\u4ee5\u751f\u6210\u4e09\u79cd\u4e0d\u540c\u7c7b\u578b\u7684\u5f26\u56fe\u3002\u9009\u9879A\u751f\u6210\u4e00\u4e2a\u5f26\u56fe\uff0c\u5176\u4e2d\u94fe\u63a5\u7684\u5bbd\u5ea6\u8868\u793a\u6bcf\u79cd\u7ec6\u80de\u7c7b\u578b\u5bf9\u4e4b\u95f4\u7684\u603b\u76f8\u4e92\u4f5c\u7528\u6b21\u6570\u3002\u9009\u9879B\u751f\u6210\u4e00\u4e2a\u5f26\u56fe\uff0c\u663e\u793a\u4e86\u76f8\u4e92\u4f5c\u7528\u9876\u90e8\u5206\u6d89\u53ca\u7684\u914d\u4f53\u3001\u53d7\u4f53\u548c\u7ec6\u80de\u7c7b\u578b\u3002\u9009\u9879C\u6269\u5927\u4e86\u9009\u9879B\u7684\u5185\u5bb9\uff0c\u8fd8\u663e\u793a\u4e86\u6bcf\u79cd\u7ec6\u80de\u7c7b\u578b\u4e2d\u914d\u4f53\u548c\u53d7\u4f53\u57fa\u56e0\u7684\u5e73\u5747\u8868\u8fbe\u6c34\u5e73\u3002\u5728\u9009\u9879B\u548c\u9009\u9879C\u4e2d\uff0c\u94fe\u63a5\u7684\u6743\u91cd\u8868\u793a\u76f8\u4e92\u4f5c\u7528\u7684\u5f97\u5206\u3002<\/span><\/p>\n<section class=\"code-snippet__fix code-snippet__js\">\n<ul class=\"code-snippet__line-index code-snippet__js\">\n<li><\/li>\n<li><\/li>\n<li><\/li>\n<\/ul>\n<pre class=\"code-snippet__js\" data-lang=\"javascript\"><code><span class=\"code-snippet_outer\">cc_circos(toy_data) <\/span><\/code><code><span class=\"code-snippet_outer\">cc_circos(toy_data, option =<span class=\"code-snippet__string\">'B'<\/span>, n_top_ints =<span class=\"code-snippet__number\">10<\/span>) <\/span><\/code><code><span class=\"code-snippet_outer\">cc_circos(toy_data, option =<span class=\"code-snippet__string\">'C'<\/span>, n_top_ints =<span class=\"code-snippet__number\">15<\/span>, exp_df = toy_exp, cell_cols =c(<span class=\"code-snippet__string\">`B`<\/span>=<span class=\"code-snippet__string\">'hotpink'<\/span>, <span class=\"code-snippet__string\">`NK`<\/span>=<span class=\"code-snippet__string\">'orange'<\/span>, <span class=\"code-snippet__string\">`CD8 T`<\/span>=<span class=\"code-snippet__string\">'cornflowerblue'<\/span>), palette =<span class=\"code-snippet__string\">'PuRd'<\/span>)<\/span><\/code><\/pre>\n<\/section>\n<p><span style=\"font-family: Cambria;font-variant: normal;text-transform: none;font-size: 15px;\"><img decoding=\"async\" loading=\"lazy\" class=\"rich_pages wxw-img\" data-imgfileid=\"100014416\" data-ratio=\"0.9212962962962963\" src=\"https:\/\/i0.wp.com\/www.biocloudservice.com\/wordpress\/wp-content\/uploads\/2024\/06\/7_G5j2o4TT4kGLyzoc7d8HGZ08NNHOSA.png?resize=560%2C515\" onerror=\"this.src='https:\/\/mmbiz.qpic.cn\/sz_mmbiz_png\/zcicibWZessAwaOtnqQlN0kicqNFL8Q1tVSLM1k54XPMHW6h8mPLQDIScfAG5j2o4TT4kGLyzoc7d8HGZ08NNHOSA\/640?wx_fmt=png'\" data-type=\"png\" data-w=\"1080\" height=\"515 .7000122070312\" width=\"560 .010009765625\" data-recalc-dims=\"1\" \/><\/span><span style=\"font-size: 15px;\">    <\/span><o:page><\/o:page><\/p>\n<p><span style=\"color: rgb(2, 30, 170);color: rgb(2, 30, 170);font-size: 15px;\"><strong>\u5bf9\u7bad\u5934\u56fe\uff08cc_arrow\uff09<\/strong><\/span><\/p>\n<p><span style=\"font-family: Cambria;font-variant: normal;text-transform: none;font-size: 15px;\">\u6b64\u51fd\u6570\u751f\u6210\u663e\u793a\u7ed9\u5b9a\u7ec6\u80de\u7c7b\u578b\u4e4b\u95f4\u76f8\u4e92\u4f5c\u7528\u7684\u56fe\u8868\u3002\u9009\u9879A\u4ec5\u663e\u793a\u4e00\u5bf9\u7ec6\u80de\u7c7b\u578b\u4e4b\u95f4\u76f8\u4e92\u4f5c\u7528\u7684\u914d\u4f53\/\u53d7\u4f53\uff0c\u800c\u9009\u9879B\u8fd8\u663e\u793a\u6bcf\u4e2a\u7ec6\u80de\u7c7b\u578b\u4e2d\u914d\u4f53\/\u53d7\u4f53\u57fa\u56e0\u7684\u8868\u8fbe\u60c5\u51b5\u3002\u5728\u8fd9\u4e24\u4e2a\u9009\u9879\u4e2d\uff0c\u7bad\u5934\u7684\u7c97\u7ec6\u4ee3\u8868\u76f8\u4e92\u4f5c\u7528\u7684\u5206\u6570\u3002<\/span><span style=\"color: rgb(6, 40, 126);font-family: Consolas;font-size: 15px;text-align: left;text-indent: 0pt;letter-spacing: 0.034em;\"><\/span><\/p>\n<section class=\"code-snippet__fix code-snippet__js\">\n<ul class=\"code-snippet__line-index code-snippet__js\">\n<li><\/li>\n<li><\/li>\n<\/ul>\n<pre class=\"code-snippet__js\" data-lang=\"javascript\"><code><span class=\"code-snippet_outer\">cc_arrow(toy_data, cell_types =c(<span class=\"code-snippet__string\">'B'<\/span>, <span class=\"code-snippet__string\">'CD8 T'<\/span>), colours =c(<span class=\"code-snippet__string\">`B`<\/span>=<span class=\"code-snippet__string\">'hotpink'<\/span>, <span class=\"code-snippet__string\">`CD8 T`<\/span>=<span class=\"code-snippet__string\">'orange'<\/span>)) <\/span><\/code><code><span class=\"code-snippet_outer\">cc_arrow(toy_data, cell_types =c(<span class=\"code-snippet__string\">'NK'<\/span>, <span class=\"code-snippet__string\">'CD8 T'<\/span>), option =<span class=\"code-snippet__string\">'B'<\/span>, exp_df = toy_exp, n_top_ints =<span class=\"code-snippet__number\">10<\/span>, palette =<span class=\"code-snippet__string\">'OrRd'<\/span>)<\/span><\/code><\/pre>\n<\/section>\n<p style=\"mso-style-name: 'Source Code';margin-top: 0.0pt;margin-bottom: 10.0pt;text-align: left;margin-left: 0.0pt;text-indent: 0.0pt;line-height: normal;mso-pagination: widow-orphan;word-break: break-all;font-size: 12.0pt;font-family: Cambria;mso-fareast-font-family: 'Cambria';mso-fareast-language: EN-US;font-weight: normal;mso-bidi-font-weight: normal;\"><img decoding=\"async\" loading=\"lazy\" class=\"rich_pages wxw-img\" data-imgfileid=\"100014419\" data-ratio=\"1.25\" src=\"https:\/\/i0.wp.com\/www.biocloudservice.com\/wordpress\/wp-content\/uploads\/2024\/06\/8_0y6Kg0usoGiaBxddOqvfo1ta3wOCKQ.png?resize=560%2C700\" onerror=\"this.src='https:\/\/mmbiz.qpic.cn\/sz_mmbiz_png\/zcicibWZessAwaOtnqQlN0kicqNFL8Q1tVSQ8b0K6H0VbpjhEf0PI52y74kj0y6Kg0usoGiaBxddOqvfo1ta3wOCKQ\/640?wx_fmt=png'\" data-type=\"png\" data-w=\"1080\" height=\"700 .010009765625\" style=\"font-size: 15px;letter-spacing: 0.034em;text-align: justify;\" width=\"560 .010009765625\" data-recalc-dims=\"1\" \/><br \/><\/p>\n<p><span style=\"color: rgb(2, 30, 170);color: rgb(2, 30, 170);font-size: 15px;\"><strong>Sigmoid\u56fe\uff08cc_sigmoid\uff09<\/strong><\/span><\/p>\n<p><span style=\"font-size: 15px;\"><span style=\"font-family: Cambria;font-variant: normal;text-transform: none;\">\u6b64\u51fd\u6570\u4f7f\u7528<\/span>ggbump<span style=\"font-family: Cambria;font-variant: normal;text-transform: none;\"> R\u5305\u4e2d\u7684<\/span>geom_sigmoid<span style=\"font-family: Cambria;font-variant: normal;text-transform: none;\">\u51fd\u6570\u7ed8\u5236\u90e8\u5206\u76f8\u4e92\u4f5c\u7528\uff0c\u5c06\u53d1\u9001\u7ec6\u80de\u4e2d\u7684\u914d\u4f53\u4e0e\u63a5\u6536\u7ec6\u80de\u4e2d\u7684\u53d7\u4f53\u8fde\u63a5\u8d77\u6765\u3002<\/span><\/span><\/p>\n<section class=\"code-snippet__fix code-snippet__js\">\n<ul class=\"code-snippet__line-index code-snippet__js\">\n<li><\/li>\n<\/ul>\n<pre class=\"code-snippet__js\"><code><span class=\"code-snippet_outer\">cc_sigmoid(toy_data)<\/span><\/code><\/pre>\n<\/section>\n<p style=\"mso-style-name: 'Source Code';margin-top: 0.0pt;margin-bottom: 10.0pt;text-align: left;margin-left: 0.0pt;text-indent: 0.0pt;line-height: normal;mso-pagination: widow-orphan;word-break: break-all;font-size: 12.0pt;font-family: Cambria;mso-fareast-font-family: 'Cambria';mso-fareast-language: EN-US;font-weight: normal;mso-bidi-font-weight: normal;\"><img decoding=\"async\" loading=\"lazy\" class=\"rich_pages wxw-img\" data-imgfileid=\"100014420\" data-ratio=\"1\" src=\"https:\/\/i0.wp.com\/www.biocloudservice.com\/wordpress\/wp-content\/uploads\/2024\/06\/9_tDVIia8OAD8UJPg0400KIlQxUibNPw.png?resize=560%2C560\" onerror=\"this.src='https:\/\/mmbiz.qpic.cn\/sz_mmbiz_png\/zcicibWZessAwaOtnqQlN0kicqNFL8Q1tVSlE7vLQNsuHp46ZjouynjSYPDvQtDVIia8OAD8UJPg0400KIlQxUibNPw\/640?wx_fmt=png'\" data-type=\"png\" data-w=\"1080\" height=\"560 .010009765625\" style=\"font-size: 15px;letter-spacing: 0.034em;text-align: justify;\" width=\"560 .010009765625\" data-recalc-dims=\"1\" \/><br \/><\/p>\n<p><span style=\"color: rgb(2, 30, 170);\"><strong><span style=\"color: rgb(2, 30, 170);font-size: 15px;\">\u53c2\u8003\u6587\u732e<\/span><\/strong><\/span><\/p>\n<p><span style=\"font-size: 15px;\"><span style=\"font-family: Cambria;font-variant: normal;text-transform: none;\">[1] Sarah Ennis, Pilib \u00d3 Broin, Eva Szegezdi, CCPlotR: an R package for the visualization of cell\u2013cell interactions, <\/span><span style=\"font-family: Cambria;font-variant: normal;text-transform: none;font-style: italic;\">Bioinformatics Advances<\/span><span style=\"font-family: Cambria;font-variant: normal;text-transform: none;\">, Volume 3, Issue 1, 2023, vbad130, <\/span><\/span><span style=\"font-family: Cambria;font-variant: normal;text-transform: none;text-decoration: none;font-size: 15px;\">https:\/\/doi.org\/10.1093\/bioadv\/vbad130<\/span><\/p>\n<section powered-by=\"xiumi.us\" style=\"margin-bottom: 0px;\">\n<section>\n<section powered-by=\"xiumi.us\">\n<section>\n<section powered-by=\"xiumi.us\">\n<section>\n<section powered-by=\"xiumi.us\">\n<section>\n<section>\n<p><img decoding=\"async\" class=\"rich_pages wxw-img\" data-galleryid=\"\" data-imgfileid=\"100014417\" data-ratio=\"0.5555555555555556\" data-s=\"300,640\" src=\"https:\/\/i0.wp.com\/www.biocloudservice.com\/wordpress\/wp-content\/uploads\/2024\/06\/10_VmRkv7tSNKliafDnsuFR7BoeDgBrww-3.jpg?w=640\" onerror=\"this.src='https:\/\/mmbiz.qpic.cn\/sz_mmbiz_jpg\/zcicibWZessAxPqeNQsFjm2HibIuSld9Nh9GicQSWhJwHjia5tEevQvDIebLErVmRkv7tSNKliafDnsuFR7BoeDgBrww\/640?wx_fmt=jpeg&from=appmsg'\" data-type=\"jpeg\" data-w=\"900\" style=\"font-size: var(--articleFontsize);letter-spacing: 0.034em;\" data-recalc-dims=\"1\" \/><br \/><\/p>\n<\/section>\n<\/section>\n<\/section>\n<\/section>\n<\/section>\n<\/section>\n<\/section>\n<\/section>\n<\/section>\n<p style=\"margin-top: 0pt;margin-bottom: 0pt;margin-left: 0pt;letter-spacing: 0.578px;text-indent: 0pt;text-wrap: wrap;text-align: justify;line-height: normal;font-size: 12pt;font-family: helvetica;color: 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