{"id":65839,"date":"2026-10-10T14:00:37","date_gmt":"2026-10-10T06:00:37","guid":{"rendered":"https:\/\/www.biocloudservice.com\/wordpress\/?post_type=ftc_question&#038;p=65839"},"modified":"2026-10-10T14:00:37","modified_gmt":"2026-10-10T06:00:37","slug":"differential-genes-ferrdb-intersection-limits","status":"publish","type":"ftc_question","link":"https:\/\/www.biocloudservice.com\/wordpress\/ferroptosis\/questions\/differential-genes-ferrdb-intersection-limits\/","title":{"rendered":"\u5dee\u5f02\u57fa\u56e0\u4e0e FerrDb \u53d6\u4ea4\u96c6\u5c31\u7b97\u94c1\u6b7b\u4ea1\u5206\u6790\u5417\uff1f"},"content":{"rendered":"<p class=\"ftc-answer-first\"><strong>\u5148\u770b\u7ed3\u8bba\uff1a<\/strong>\u53d6\u4ea4\u96c6\u80fd\u5f97\u5230\u201c\u5728\u672c\u6570\u636e\u4e2d\u5dee\u5f02\u8868\u8fbe\u4e14\u6709\u94c1\u6b7b\u4ea1\u76f8\u5173\u6ce8\u91ca\u201d\u7684\u5019\u9009\u57fa\u56e0\uff0c\u4f46\u4e0d\u80fd\u72ec\u7acb\u8bc1\u660e\u901a\u8def\u6d3b\u6027\u3001\u673a\u5236\u56e0\u679c\u6216\u9884\u6d4b\u4ef7\u503c\u3002\u5b8c\u6574\u5206\u6790\u8981\u5148\u4fdd\u8bc1\u5dee\u5f02\u6bd4\u8f83\u6709\u6548\uff0c\u518d\u6839\u636e\u7814\u7a76\u76ee\u6807\u9009\u62e9\u5bcc\u96c6\u3001\u6837\u672c\u8bc4\u5206\u3001\u7ec6\u80de\u5b9a\u4f4d\u6216\u529f\u80fd\u9a8c\u8bc1\uff0c\u5e76\u62a5\u544a\u672a\u652f\u6301\u9884\u671f\u7684\u7ed3\u679c\u3002<\/p>\n<h2>\u9002\u7528\u60c5\u51b5<\/h2>\n<p>\u5df2\u7ecf\u6709\u5dee\u5f02\u8868\u8fbe\u8868\u548c FerrDb \u57fa\u56e0\u96c6\uff0c\u51c6\u5907\u505a Venn \u56fe\u3001\u7b5b\u9009\u5019\u9009\u6216\u6269\u5c55\u94c1\u6b7b\u4ea1\u7814\u7a76\u3002<\/p>\n<h2>\u5efa\u8bae\u6309\u8fd9\u4e2a\u987a\u5e8f\u68c0\u67e5<\/h2>\n<ol>\n<li>\u68c0\u67e5\u5dee\u5f02\u5206\u6790\u7684\u8f93\u5165\u5355\u4f4d\u3001\u5206\u7ec4\u3001\u91cd\u590d\u3001\u914d\u5bf9\u5173\u7cfb\u3001\u6279\u6b21\u548c\u6bd4\u8f83\u65b9\u5411\uff0c\u5148\u4fee\u6b63\u57fa\u7840\u8bbe\u8ba1\u3002<\/li>\n<li>\u7edf\u4e00\u57fa\u56e0 ID \u4e0e\u7269\u79cd\uff0c\u8bb0\u5f55\u5dee\u5f02\u9608\u503c\u3001\u6821\u6b63\u540e\u7684 P \u503c\u3001\u6548\u5e94\u91cf\u548c\u57fa\u56e0\u96c6\u7248\u672c\u3002<\/li>\n<li>\u8ba1\u7b97\u4ea4\u96c6\u65f6\u4fdd\u5b58\u4e24\u4fa7\u5168\u96c6\u4e0e\u53bb\u91cd\u89c4\u5219\uff0c\u4ea4\u96c6\u4e3a\u7a7a\u4e5f\u8981\u4fdd\u7559\uff0c\u4e0d\u901a\u8fc7\u653e\u5bbd\u9608\u503c\u5f3a\u884c\u5236\u9020\u7ed3\u679c\u3002<\/li>\n<li>\u82e5\u505a\u8fc7\u5ea6\u4ee3\u8868\u5206\u6790\uff0c\u4f7f\u7528\u6709\u673a\u4f1a\u88ab\u68c0\u6d4b\u548c\u68c0\u9a8c\u7684\u80cc\u666f\u57fa\u56e0\uff1b\u82e5\u7528\u6392\u5e8f\u5bcc\u96c6\uff0c\u4fdd\u5b58\u9884\u5148\u786e\u5b9a\u7684\u5168\u91cf\u6392\u5e8f\u6307\u6807\u3002<\/li>\n<li>\u5019\u9009\u57fa\u56e0\u7ee7\u7eed\u68c0\u67e5\u7a33\u5b9a\u6027\u3001\u7ec6\u80de\u6765\u6e90\u3001\u72ec\u7acb\u6570\u636e\u548c\u53ef\u5e72\u9884\u6027\uff1b\u4e0d\u540c\u76ee\u6807\u9009\u62e9\u76f8\u5e94\u9a8c\u8bc1\u8def\u5f84\u3002<\/li>\n<\/ol>\n<h2>\u540c\u4e00\u5f20\u4ea4\u96c6\u56fe\u540e\u9762\u6709\u4e09\u6761\u8def\u7ebf<\/h2>\n<div class=\"ftc-table-wrap\" role=\"region\" tabindex=\"0\" aria-label=\"\u540c\u4e00\u5f20\u4ea4\u96c6\u56fe\u540e\u9762\u6709\u4e09\u6761\u8def\u7ebf\">\n<table>\n<thead>\n<tr>\n<th scope=\"col\">\u4f60\u771f\u6b63\u60f3\u56de\u7b54<\/th>\n<th scope=\"col\">\u66f4\u5408\u9002\u7684\u8ffd\u52a0\u6750\u6599<\/th>\n<th scope=\"col\">\u4e0d\u80fd\u7701\u7565<\/th>\n<\/tr>\n<\/thead>\n<tbody>\n<tr>\n<td>\u94c1\u6b7b\u4ea1\u76f8\u5173\u8868\u8fbe\u662f\u5426\u6574\u4f53\u6539\u53d8<\/td>\n<td>\u57fa\u56e0\u96c6\u5c42\u9762\u7684\u68c0\u9a8c\u53ca\u65b9\u5411\u8bf4\u660e<\/td>\n<td>\u80cc\u666f\u96c6\u6216\u6392\u5e8f\u89c4\u5219\u3001\u591a\u91cd\u68c0\u9a8c<\/td>\n<\/tr>\n<tr>\n<td>\u54ea\u4e00\u4e2a\u57fa\u56e0\u503c\u5f97\u4f18\u5148\u7814\u7a76<\/td>\n<td>\u6548\u5e94\u91cf\u3001\u7a33\u5b9a\u6027\u3001\u7ec6\u80de\u5b9a\u4f4d\u3001\u6587\u732e\u8bc1\u636e\u8868<\/td>\n<td>\u72ec\u7acb\u9a8c\u8bc1\u4e0e\u529f\u80fd\u53ef\u884c\u6027<\/td>\n<\/tr>\n<tr>\n<td>\u80fd\u5426\u9884\u6d4b\u75be\u75c5\u6216\u7ed3\u5c40<\/td>\n<td>\u9884\u5148\u5b9a\u4e49\u76ee\u6807\u3001\u8bad\u7ec3\u9a8c\u8bc1\u6d41\u7a0b<\/td>\n<td>\u9632\u6570\u636e\u6cc4\u6f0f\u3001\u5916\u90e8\u6027\u80fd\u8bc4\u4f30<\/td>\n<\/tr>\n<\/tbody>\n<\/table>\n<\/div>\n<p class=\"ftc-inline-sources\">\u4f9d\u636e\uff1a<a href=\"https:\/\/www.zhounan.org\/ferrdb\/v3\/pages\/help.html\" target=\"_blank\" rel=\"noopener noreferrer\">FerrDb V3 \u5b98\u65b9\u5e2e\u52a9\uff1a\u5206\u7c7b\u3001\u7f6e\u4fe1\u7b49\u7ea7\u4e0e\u6570\u636e\u7248\u672c<\/a> \u00b7 <a href=\"https:\/\/bioconductor.org\/packages\/release\/bioc\/vignettes\/DESeq2\/inst\/doc\/DESeq2.html\" target=\"_blank\" rel=\"noopener noreferrer\">DESeq2 \u5b98\u65b9\u6559\u7a0b\uff1a\u8f93\u5165\u3001\u8bbe\u8ba1\u77e9\u9635\u4e0e\u6280\u672f\u91cd\u590d<\/a> \u00b7 <a href=\"https:\/\/www.tripod-statement.org\/resources\/\" target=\"_blank\" rel=\"noopener noreferrer\">TRIPOD \u5b98\u65b9\u8d44\u6e90\uff1a\u9884\u6d4b\u6a21\u578b\u5f00\u53d1\u4e0e\u9a8c\u8bc1\u6e05\u5355<\/a><\/p>\n<h2>\u53ef\u8fd0\u884c\u7684\u6700\u5c0f\u4ea4\u96c6\u793a\u4f8b<\/h2>\n<p>\u8fd9\u91cc DEMO_X \u4e0d\u5728\u53d7\u68c0\u8303\u56f4\u5185\uff0c\u4e0d\u80fd\u5047\u5b9a\u5b83\u5177\u6709\u548c\u5176\u4ed6\u57fa\u56e0\u76f8\u540c\u7684\u88ab\u9009\u4e2d\u673a\u4f1a\u3002\u771f\u5b9e\u7814\u7a76\u8fd8\u5e94\u8bb0\u5f55\u4f4e\u8868\u8fbe\u8fc7\u6ee4\u548c\u7edf\u8ba1\u68c0\u9a8c\u5931\u8d25\u7684\u60c5\u51b5\u3002\u4ee3\u7801\u53ea\u9a8c\u8bc1\u96c6\u5408\u64cd\u4f5c\uff0c\u4e0d\u5305\u542b\u5dee\u5f02\u5206\u6790\u6216\u94c1\u6b7b\u4ea1\u751f\u7269\u5b66\u7ed3\u8bba\u3002<\/p>\n<pre class=\"ftc-code\"><code># \u4eba\u5de5\u6784\u9020\u7684\u5c0f\u5217\u8868\uff0c\u4ec5\u6f14\u793a\u96c6\u5408\u5173\u7cfb\uff0c\u4e0d\u662f FerrDb \u6570\u636e\ntested &lt;- c(&#039;DEMO_A&#039;, &#039;DEMO_B&#039;, &#039;DEMO_C&#039;, &#039;DEMO_D&#039;)\ndeg &lt;- c(&#039;DEMO_A&#039;, &#039;DEMO_C&#039;)\nannotation_set &lt;- c(&#039;DEMO_A&#039;, &#039;DEMO_B&#039;, &#039;DEMO_X&#039;)\ncandidate &lt;- intersect(deg, annotation_set)\nbackground_set &lt;- intersect(tested, annotation_set)\nstopifnot(identical(candidate, &#039;DEMO_A&#039;))\nstopifnot(length(background_set) == 2L)<\/code><\/pre>\n<h2>\u4ea4\u96c6\u5f88\u5c0f\u6216\u4e3a\u7a7a\u600e\u4e48\u529e<\/h2>\n<p>\u5148\u6392\u9664 ID \u6df7\u7528\u3001\u7269\u79cd\u4e0d\u5339\u914d\u548c\u9519\u8bef\u9608\u503c\uff1b\u82e5\u8fd9\u4e9b\u90fd\u6b63\u786e\uff0c\u4ea4\u96c6\u5c11\u53ef\u80fd\u5c31\u662f\u6570\u636e\u7684\u5b9e\u9645\u7ed3\u679c\u3002\u53ef\u4ee5\u6309\u7167\u539f\u5148\u7684\u79d1\u5b66\u95ee\u9898\u4f7f\u7528\u5b8c\u6574\u6392\u5e8f\u4fe1\u606f\uff0c\u6216\u91cd\u65b0\u8bc4\u4f30\u6837\u672c\u91cf\u4e0e\u6548\u5e94\uff0c\u4f46\u4e0d\u8981\u56e0\u4e3a\u6ca1\u6709\u201c\u597d\u770b\u7684\u4ea4\u96c6\u201d\u5c31\u5012\u63a8\u7b5b\u9009\u6761\u4ef6\u3002<\/p>\n<p>\u5019\u9009\u62a5\u544a\u53ef\u540c\u65f6\u5217\u51fa\u6548\u5e94\u91cf\u3001\u533a\u95f4\u3001\u6821\u6b63 P \u503c\u3001\u5404\u961f\u5217\u65b9\u5411\u548c\u673a\u5236\u8bc1\u636e\u3002Venn \u56fe\u4fdd\u7559\u4e3a\u7b5b\u9009\u8fc7\u7a0b\u5c55\u793a\uff0c\u800c\u4e0d\u662f\u6574\u7bc7\u7814\u7a76\u7684\u4e3b\u8981\u8bba\u8bc1\u3002<\/p>\n<h2>\u4e0d\u80fd\u4ece\u5f53\u524d\u7ed3\u679c\u76f4\u63a5\u5f97\u51fa\u4ec0\u4e48<\/h2>\n<p>\u4ea4\u96c6\u4e0d\u6784\u6210\u56e0\u679c\u6216\u673a\u5236\u8bc1\u660e\u3002\u7528\u540c\u4e00\u6279\u6570\u636e\u7b5b\u57fa\u56e0\u518d\u5728\u539f\u6570\u636e\u4e0a\u62a5\u544a\u9ad8\u9884\u6d4b\u6027\u80fd\uff0c\u4f1a\u5938\u5927\u53ef\u63a8\u5e7f\u6027\u3002<\/p>\n<h2>\u4f9d\u636e\u4e0e\u7248\u672c<\/h2>\n<ul class=\"ftc-source-list\">\n<li><a href=\"https:\/\/www.zhounan.org\/ferrdb\/v3\/pages\/help.html\" target=\"_blank\" rel=\"noopener noreferrer\">FerrDb V3 \u5b98\u65b9\u5e2e\u52a9\uff1a\u5206\u7c7b\u3001\u7f6e\u4fe1\u7b49\u7ea7\u4e0e\u6570\u636e\u7248\u672c<\/a><span>FerrDb V3\uff1b2026-10-10 \u6838\u5bf9<\/span><\/li>\n<li><a href=\"https:\/\/bioconductor.org\/packages\/release\/bioc\/vignettes\/DESeq2\/inst\/doc\/DESeq2.html\" target=\"_blank\" rel=\"noopener noreferrer\">DESeq2 \u5b98\u65b9\u6559\u7a0b\uff1a\u8f93\u5165\u3001\u8bbe\u8ba1\u77e9\u9635\u4e0e\u6280\u672f\u91cd\u590d<\/a><span>release \u5728\u7ebf\u6559\u7a0b\uff1b\u793a\u4f8b\u5e94\u5339\u914d\u672c\u5730\u7248\u672c<\/span><\/li>\n<li><a href=\"https:\/\/www.tripod-statement.org\/resources\/\" target=\"_blank\" rel=\"noopener noreferrer\">TRIPOD \u5b98\u65b9\u8d44\u6e90\uff1a\u9884\u6d4b\u6a21\u578b\u5f00\u53d1\u4e0e\u9a8c\u8bc1\u6e05\u5355<\/a><span>2015 \u57fa\u7840\u8d44\u6599\u4e0e\u52d8\u8bef\uff1b\u73b0\u884c\u66f4\u65b0\u53e6\u89c1 TRIPOD+AI<\/span><\/li>\n<\/ul>\n<p class=\"ftc-verification\">\u6700\u540e\u6838\u9a8c\uff1a2026-10-10\uff5c\u8d44\u6599\u6838\u9a8c\uff1aAI \u7f16\u5199\u4e0e\u516c\u5f00\u6765\u6e90\u6838\u5bf9\uff1b\u672a\u7ecf\u4eba\u5de5\u4e13\u5bb6\u5ba1\u9605<\/p>\n<p class=\"ftc-verification\">\u4f9d\u636e\u516c\u5f00\u6765\u6e90\u6838\u5bf9\u6982\u5ff5\u3001\u8f93\u5165\u3001\u8bc1\u636e\u8fb9\u754c\u4e0e\u7248\u672c\u53e3\u5f84\uff1b\u793a\u610f\u6570\u636e\u4e0d\u4ee3\u8868\u771f\u5b9e\u7814\u7a76\u7ed3\u679c\u3002\u4ec5\u6807\u660e\u7684\u5c0f\u578b\u4ee3\u7801\u793a\u4f8b\u7ecf\u8fc7\u8fd0\u884c\u68c0\u67e5\uff0c\u4e0d\u4ee3\u8868\u5b8c\u6574\u751f\u7269\u4fe1\u606f\u6d41\u7a0b\u6216\u539f\u8bba\u6587\u5df2\u590d\u73b0\u3002 \u672c\u9875\u6700\u5c0f R \u793a\u4f8b\u5df2\u5728 R 4.3.3 \u72ec\u7acb\u4f1a\u8bdd\u8fd0\u884c\uff1b\u4e0d\u6d89\u53ca\u5b8c\u6574 Seurat\/GSVA \u5de5\u4f5c\u6d41\u9a8c\u8bc1\u3002<\/p>\n<h2>\u7ee7\u7eed\u89e3\u51b3\u76f8\u5173\u95ee\u9898<\/h2>\n<ul class=\"ftc-related-reading\">\n<li><a href=\"https:\/\/www.biocloudservice.com\/wordpress\/ferroptosis\/questions\/bulk-rnaseq-ferroptosis-score-method\/\">bulk RNA-seq \u94c1\u6b7b\u4ea1\u8bc4\u5206\u8be5\u9009 GSVA\u3001ssGSEA \u8fd8\u662f\u5176\u4ed6\u65b9\u6cd5\uff1f<\/a><\/li>\n<li><a href=\"https:\/\/www.biocloudservice.com\/wordpress\/ferroptosis\/questions\/ferroptosis-model-overfitting-validation\/\">\u7528\u94c1\u6b7b\u4ea1\u57fa\u56e0\u505a WGCNA\u3001\u673a\u5668\u5b66\u4e60\u6216\u9884\u540e\u6a21\u578b\uff0c\u600e\u6837\u907f\u514d\u8fc7\u62df\u5408\uff1f<\/a><\/li>\n<li><a href=\"https:\/\/www.biocloudservice.com\/wordpress\/ferroptosis\/questions\/select-ferroptosis-candidate-genes-evidence\/\">\u600e\u6837\u4ece\u94c1\u6b7b\u4ea1\u57fa\u56e0\u4e2d\u9009\u62e9\u5019\u9009\u57fa\u56e0\uff0c\u800c\u4e0d\u662f\u53ea\u770b\u4ea4\u96c6\u548c P \u503c\uff1f<\/a><\/li>\n<\/ul>\n","protected":false},"excerpt":{"rendered":"<p>\u53d6\u4ea4\u96c6\u80fd\u5f97\u5230\u201c\u5728\u672c\u6570\u636e\u4e2d\u5dee\u5f02\u8868\u8fbe\u4e14\u6709\u94c1\u6b7b\u4ea1\u76f8\u5173\u6ce8\u91ca\u201d\u7684\u5019\u9009\u57fa\u56e0\uff0c\u4f46\u4e0d\u80fd\u72ec\u7acb\u8bc1\u660e\u901a\u8def\u6d3b\u6027\u3001\u673a\u5236\u56e0\u679c\u6216\u9884\u6d4b\u4ef7\u503c\u3002\u5b8c\u6574\u5206\u6790\u8981\u5148\u4fdd\u8bc1\u5dee\u5f02\u6bd4\u8f83\u6709\u6548\uff0c\u518d\u6839\u636e\u7814\u7a76\u76ee\u6807\u9009\u62e9\u5bcc\u96c6\u3001\u6837\u672c\u8bc4\u5206\u3001\u7ec6\u80de\u5b9a\u4f4d\u6216\u529f\u80fd\u9a8c\u8bc1\uff0c\u5e76\u62a5\u544a\u672a\u652f\u6301\u9884\u671f\u7684\u7ed3\u679c\u3002<\/p>\n","protected":false},"template":"","class_list":["post-65839","ftc_question","type-ftc_question","status-publish","hentry"],"jetpack_sharing_enabled":true,"_links":{"self":[{"href":"https:\/\/www.biocloudservice.com\/wordpress\/wp-json\/wp\/v2\/ftc_question\/65839","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/www.biocloudservice.com\/wordpress\/wp-json\/wp\/v2\/ftc_question"}],"about":[{"href":"https:\/\/www.biocloudservice.com\/wordpress\/wp-json\/wp\/v2\/types\/ftc_question"}],"version-history":[{"count":1,"href":"https:\/\/www.biocloudservice.com\/wordpress\/wp-json\/wp\/v2\/ftc_question\/65839\/revisions"}],"predecessor-version":[{"id":65859,"href":"https:\/\/www.biocloudservice.com\/wordpress\/wp-json\/wp\/v2\/ftc_question\/65839\/revisions\/65859"}],"wp:attachment":[{"href":"https:\/\/www.biocloudservice.com\/wordpress\/wp-json\/wp\/v2\/media?parent=65839"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}