{"id":66343,"date":"2026-11-05T09:08:07","date_gmt":"2026-11-05T01:08:07","guid":{"rendered":"https:\/\/www.biocloudservice.com\/wordpress\/?p=66343"},"modified":"2026-11-05T09:08:07","modified_gmt":"2026-11-05T01:08:07","slug":"captain-single-cell-multiomics-gpu-planning","status":"publish","type":"post","link":"https:\/\/www.biocloudservice.com\/wordpress\/captain-single-cell-multiomics-gpu-planning\/","title":{"rendered":"4\u5f2080GB H800\u8dd17\u5929\uff1aCAPTAIN\u5355\u7ec6\u80de\u591a\u7ec4\u5b66\uff0c\u771f\u6b63\u8d35\u7684\u662f\u54ea\u4e00\u6b65\uff1f"},"content":{"rendered":"
\n

\u5355\u7ec6\u80deRNA\u6d4b\u5e8f\u80fd\u770b\u5230\u8f6c\u5f55\u72b6\u6001\uff0c\u5374\u4e0d\u80fd\u76f4\u63a5\u7b49\u540c\u4e8e\u7ec6\u80de\u8868\u9762\u86cb\u767d\u72b6\u6001\uff1bCITE-seq\u628aRNA\u4e0e\u6297\u4f53\u6807\u7b7e\u540c\u65f6\u6d4b\u51fa\u6765\uff0c\u53c8\u4f1a\u589e\u52a0\u5b9e\u9a8c\u548c\u6570\u636e\u5904\u7406\u590d\u6742\u5ea6\u3002\u4e8e\u662f\uff0c\u80fd\u591f\u4ece\u8f6c\u5f55\u7ec4\u5b66\u4e60RNA\u2014\u86cb\u767d\u5bf9\u5e94\u5173\u7cfb\u7684\u591a\u6a21\u6001\u57fa\u7840\u6a21\u578b\u5f88\u6709\u5438\u5f15\u529b\u3002\u4f46\u770b\u5230\u201c\u57fa\u7840\u6a21\u578b\u201d\u4e09\u4e2a\u5b57\uff0c\u8bfe\u9898\u7ec4\u5e38\u72af\u4e24\u4e2a\u76f8\u53cd\u7684\u9519\u8bef\uff1a\u8981\u4e48\u4ee5\u4e3a\u4e0b\u8f7d\u6743\u91cd\u540e\u666e\u901a\u7535\u8111\u5c31\u80fd\u5b8c\u6210\u6240\u6709\u4efb\u52a1\uff0c\u8981\u4e48\u628a\u8bba\u6587\u9884\u8bad\u7ec3\u4f7f\u7528\u7684\u6574\u5957\u96c6\u7fa4\u914d\u7f6e\uff0c\u8bef\u5f53\u6210\u6bcf\u6b21\u63a8\u7406\u90fd\u5fc5\u987b\u590d\u523b\u7684\u95e8\u69db\u3002<\/p>\n

2026\u5e74\u53d1\u8868\u4e8e\u300aNature Communications\u300b\u7684CAPTAIN\uff0c\u7ed9\u51fa\u4e86\u4e00\u4e2a\u96be\u5f97\u6e05\u695a\u7684\u7b97\u529b\u6837\u672c\u3002\u8bba\u6587\u6c47\u603b\u8d85\u8fc7420\u4e07\u5bf9\u5171\u540c\u6d4b\u91cf\u7684\u5355\u7ec6\u80deRNA\u2014\u86cb\u767d\u6570\u636e\uff0c\u6765\u81ea249\u4e2a\u72ec\u7acb\u6837\u672c\uff0c\u5e76\u5efa\u7acb382\u79cd\u8868\u9762\u86cb\u767d\u7684\u6807\u51c6\u8bcd\u8868\u3002\u57fa\u7840\u6a21\u578b\u9884\u8bad\u7ec310\u4e2aepoch\uff0c\u8fde\u7eed\u8fd0\u884c\u7ea67\u5929\uff0c\u4f7f\u75284\u5f20NVIDIA H800\uff08\u6bcf\u5f2080GB\u663e\u5b58\uff09\u30015TB\u7cfb\u7edf\u5185\u5b58\u548c437TB\u5b58\u50a8\uff1b\u8bad\u7ec3\u65f6\u5355\u5361\u5cf0\u503c\u663e\u5b58\u7ea675GB\uff0c\u7cfb\u7edf\u5185\u5b58\u5cf0\u503c\u7ea6100GB\u3002\u6570\u5b57\u5f88\u5927\uff0c\u4f46\u8bba\u6587\u4e5f\u660e\u786e\uff1a\u8fd9\u5957\u5f00\u9500\u5bf9\u5e94\u4e00\u6b21\u6027\u9884\u8bad\u7ec3\uff0c\u4e0d\u80fd\u76f4\u63a5\u5957\u5230\u96f6\u6837\u672c\u63a8\u7406\u6216\u4e0b\u6e38\u5fae\u8c03\u3002<\/p>\n

\"CAPTAIN\u5355\u7ec6\u80deRNA\u86cb\u767d\u591a\u6a21\u6001\u6a21\u578b\u7b97\u529b\u5206\u5c42\u6d77\u62a5\"
CAPTAIN\u7b97\u529b\u5206\u5c42\uff1a\u8bba\u6587\u7ea7\u9884\u8bad\u7ec3\u3001\u4e0b\u6e38\u5fae\u8c03\u4e0e\u96f6\u6837\u672c\u63a8\u7406\u9700\u8981\u5206\u522b\u6d4b\u7b97\u3002<\/figcaption><\/figure>\n

\u5148\u5206\u6e05\u4e09\u7c7b\u4efb\u52a1\uff0c\u670d\u52a1\u5668\u624d\u4e0d\u4f1a\u914d\u9519<\/h2>\n
\n\n\n\n\n\n\n\n
\u4efb\u52a1\u5c42\u7ea7<\/th>\n\u5178\u578b\u8f93\u5165\u4e0e\u76ee\u6807<\/th>\n\u8bba\u6587\u6216\u5b98\u65b9\u4fe1\u606f<\/th>\n\u8d44\u6e90\u5224\u65ad<\/th>\n<\/tr>\n<\/thead>\n
\u96f6\u6837\u672c\u63a8\u7406<\/td>\n\u4ec5\u7528RNA\u9884\u6d4b\u6807\u51c6\u8bcd\u8868\u5185\u8868\u9762\u86cb\u767d<\/td>\n\u4e0d\u8fdb\u884c\u76ee\u6807\u6570\u636e\u96c6\u5fae\u8c03<\/td>\n\u5148\u7528\u5c0f\u6279\u91cf\u6d4b\u663e\u5b58\u548c\u541e\u5410\uff0c\u4e0d\u7167\u642c\u9884\u8bad\u7ec3\u96c6\u7fa4<\/td>\n<\/tr>\n
\u4e0b\u6e38\u5fae\u8c03<\/td>\n\u65b0CITE-seq\u6570\u636e\u505a\u86cb\u767d\u586b\u8865\u3001\u6ce8\u91ca\u6216\u6574\u5408<\/td>\n\u8bba\u6587\u5e38\u75289:1\u5212\u5206\u300115\u4e2aepoch\uff1b\u4efb\u52a1\u53c2\u6570\u4e0d\u540c<\/td>\n\u9700\u8981GPU\u3001\u8bad\u7ec3\u65e5\u5fd7\u548c\u72ec\u7acb\u9a8c\u8bc1\u96c6\uff0c\u8d44\u6e90\u968f\u7ec6\u80de\u6570\u589e\u957f<\/td>\n<\/tr>\n
\u4ece\u5934\u9884\u8bad\u7ec3<\/td>\n\u91cd\u65b0\u8bad\u7ec3\u8de8\u7ec4\u7ec7RNA\u2014\u86cb\u767d\u57fa\u7840\u6a21\u578b<\/td>\n4\u00d7H800 80GB\u3001\u7ea67\u5929\uff1b\u5355\u5361\u5cf0\u503c\u7ea675GB<\/td>\n\u5c5e\u4e8e\u591aGPU\u5206\u5e03\u5f0f\u8bad\u7ec3\uff0c\u9700\u9ad8\u901f\u5b58\u50a8\u548c\u53ef\u9760\u65ad\u70b9<\/td>\n<\/tr>\n<\/tbody>\n<\/table>\n<\/div>\n

\u771f\u6b63\u51b3\u5b9a\u914d\u7f6e\u7684\u4e0d\u662f\u201cCAPTAIN\u201d\u8fd9\u4e2a\u540d\u79f0\uff0c\u800c\u662f\u4f60\u8981\u505a\u54ea\u4e00\u5c42\u3002\u5982\u679c\u53ea\u662f\u5bf9\u81ea\u5df1\u7684scRNA-seq\u505a\u6807\u51c6\u8bcd\u8868\u5185\u86cb\u767d\u63a8\u7406\uff0c\u76f4\u63a5\u4ece\u4f5c\u8005\u9884\u8bad\u7ec3\u6743\u91cd\u5f00\u59cb\uff1b\u5982\u679c\u6709\u6210\u5bf9RNA\u2014\u86cb\u767d\u6570\u636e\u5e76\u5e0c\u671b\u9002\u914d\u7ec4\u7ec7\u6216\u5e73\u53f0\uff0c\u518d\u505a\u5fae\u8c03\uff1b\u53ea\u6709\u7814\u7a76\u76ee\u6807\u6d89\u53ca\u65b0\u8bcd\u8868\u3001\u65b0\u6a21\u6001\u6216\u5927\u89c4\u6a21\u9884\u8bad\u7ec3\u8bed\u6599\u65f6\uff0c\u624d\u9700\u8981\u63a5\u8fd1\u8bba\u6587\u7ea7\u591a\u5361\u8bad\u7ec3\u3002<\/p>\n

\u4e3a\u4ec0\u4e48\u6a21\u578b\u53c2\u6570\u4e4b\u5916\uff0c\u6570\u636e\u4e0eI\/O\u540c\u6837\u5403\u8d44\u6e90<\/h2>\n

CAPTAIN\u91c7\u7528\u53cc\u7f16\u7801\u5668\uff1aRNA\u6a21\u5757\u4e3a12\u5c42Transformer\uff0c\u86cb\u767d\u6a21\u5757\u4e3a6\u5c42Transformer\uff0c\u5d4c\u5165\u7ef4\u5ea6\u5747\u4e3a512\u3001\u6bcf\u5c428\u4e2a\u6ce8\u610f\u529b\u5934\u3002\u9884\u8bad\u7ec3\u65f6RNA\u6700\u591a\u8f93\u51651200\u4e2a\u975e\u96f6\u8868\u8fbe\u57fa\u56e0\uff0c\u63a9\u7801\u6bd4\u4f8b0.15\uff1b\u86cb\u767d\u8f93\u5165\u957f\u5ea6\u5bf9\u5e94\u6807\u51c6\u8bcd\u8868\u3002\u770b\u4e0a\u53bb\u5e8f\u5217\u4e0d\u7b97\u957f\uff0c\u4f46420\u4e07\u7ec6\u80de\u300110\u8f6e\u8bad\u7ec3\u3001\u8de8\u6a21\u6001\u6ce8\u610f\u529b\u548c\u591a\u76ee\u6807\u635f\u5931\u4f1a\u653e\u5927\u8bfb\u53d6\u3001\u9884\u5904\u7406\u3001\u68af\u5ea6\u540c\u6b65\u4e0e\u68c0\u67e5\u70b9\u5199\u5165\u538b\u529b\u3002<\/p>\n

\u8bba\u6587\u4f7f\u7528\u7684437TB\u662f\u673a\u6784\u9ad8\u6027\u80fd\u8ba1\u7b97\u7cfb\u7edf\u7684\u603b\u5b58\u50a8\u914d\u7f6e\uff0c\u4e0d\u5e94\u89e3\u91ca\u6210CAPTAIN\u5355\u4e2a\u9879\u76ee\u5fc5\u7136\u5360\u7528437TB\uff1b\u540c\u7406\uff0c5TB\u7cfb\u7edf\u5185\u5b58\u4e5f\u4e0d\u662f\u8bba\u6587\u62a5\u544a\u7684\u5b9e\u9645\u5cf0\u503c\uff0c\u8bba\u6587\u7ed9\u51fa\u7684\u7cfb\u7edf\u5185\u5b58\u5cf0\u503c\u7ea6100GB\u3002\u670d\u52a1\u5668\u89c4\u5212\u8981\u533a\u5206\u201c\u8282\u70b9\u62e5\u6709\u591a\u5c11\u8d44\u6e90\u201d\u548c\u201c\u4efb\u52a1\u5b9e\u9645\u7528\u4e86\u591a\u5c11\u8d44\u6e90\u201d\uff0c\u5426\u5219\u5f88\u5bb9\u6613\u628a\u9884\u7b97\u653e\u5927\u4e00\u4e2a\u6570\u91cf\u7ea7\u3002<\/p>\n

\u53ef\u6267\u884c\u7684\u90e8\u7f72\u9884\u68c0\uff1a\u5148\u9a8c\u8bc1\u73af\u5883\uff0c\u518d\u4e0b\u8f7d\u5927\u6587\u4ef6<\/h2>\n

\u5b98\u65b9\u4ed3\u5e93\u63a8\u8350PyTorch 2.1.2\u3001Python 3.10\u548cCUDA 12.8\uff0c\u5e76\u63d0\u4f9bDocker\u955c\u50cf\uff1bFlashAttention\u53ef\u52a0\u901f\u8bad\u7ec3\uff0c\u4f46\u4e0d\u662f\u6a21\u578b\u8fd0\u884c\u7684\u5f3a\u5236\u6761\u4ef6\u3002\u6b63\u5f0f\u5bfc\u5165\u6570\u636e\u524d\uff0c\u5148\u8bb0\u5f55\u9a71\u52a8\u3001\u5bb9\u5668\u548cGPU\u72b6\u6001\uff1a<\/p>\n

nvidia-smi --query-gpu=name,memory.total,driver_version --format=csv\r\ndocker pull crpi-nzg91d1psypntvav.cn-beijing.personal.cr.aliyuncs.com\/jiboya\/captain_image:latest\r\ndocker run --gpus all --rm -it \\\r\n  -v \/data\/captain:\/workspace \\\r\n  crpi-nzg91d1psypntvav.cn-beijing.personal.cr.aliyuncs.com\/jiboya\/captain_image:latest \/bin\/bash\r\nconda activate captain\r\npython -c "import torch; print(torch.__version__, torch.cuda.is_available(), torch.cuda.device_count())"\r\n<\/code><\/pre>\n
\u82e5\u8981\u590d\u73b0\u5b9e\u9a8c\u9884\u8bad\u7ec3\uff0c\u4ed3\u5e93\u793a\u4f8b\u4f7f\u7528torchrun --nproc_per_node=4<\/code>\u542f\u52a8\u56db\u5361\u5206\u5e03\u5f0f\u4efb\u52a1\u3002\u5b9e\u9645\u64cd\u4f5c\u524d\u5e94\u5148\u4ee5\u5c11\u91cf\u7ec6\u80de\u5b8c\u6210\u4e00\u6b21\u7aef\u5230\u7aef\u8bd5\u8dd1\uff0c\u786e\u8ba4MuData\u4e2d\u7684RNA\u4e0e\u86cb\u767d\u7ec6\u80de\u4e00\u4e00\u5bf9\u5e94\u3001\u57fa\u56e0\u540d\u80fd\u6620\u5c04\u5230\u8bcd\u8868\u3001\u86cb\u767d\u540d\u79f0\u7ecf\u8fc7\u6807\u51c6\u5316\u3001\u8f93\u51fa\u68c0\u67e5\u70b9\u53ef\u91cd\u65b0\u8f7d\u5165\u3002\u4e0d\u8981\u4e00\u5f00\u59cb\u5c31\u628a\u5168\u90e8\u6837\u672c\u585e\u8fdb\u8bad\u7ec3\u961f\u5217\u3002<\/p>\n
\u8f93\u5165\u68c0\u67e5\u81f3\u5c11\u8981\u8f93\u51fa\u56db\u5f20\u6e05\u5355\uff1aRNA\u4e0e\u86cb\u767d\u5171\u6709\u7ec6\u80de\u6570\u3001\u65e0\u6cd5\u6620\u5c04\u7684\u57fa\u56e0\u6570\u3001\u65e0\u6cd5\u6620\u5c04\u7684\u86cb\u767d\u6570\uff0c\u4ee5\u53ca\u6bcf\u4e2a\u6837\u672c\u7684\u7ec6\u80de\u4e0e\u86cb\u767d\u9762\u677f\u89c4\u6a21\u3002\u82e5\u4f7f\u7528\u4f5c\u8005\u7684\u8de8\u7269\u79cd\u6620\u5c04\uff0c\u8fd8\u5e94\u4fdd\u7559\u8f6c\u6362\u524d\u540e\u57fa\u56e0\u540d\uff0c\u68c0\u67e5\u4e00\u5bf9\u591a\u548c\u7f3a\u5931\u6620\u5c04\u3002\u5f52\u4e00\u5316\u3001\u5bf9\u6570\u8f6c\u6362\u3001\u9ad8\u53d8\u57fa\u56e0\u9009\u62e9\u4e0e\u5206\u7bb1\u6b65\u9aa4\u8981\u4e0e\u5bf9\u5e94\u4e0b\u6e38\u6559\u7a0b\u4e00\u81f4\uff1b\u540c\u4e00\u4e2a\u5bf9\u8c61\u4e0d\u8981\u5728\u4e0a\u6e38\u811a\u672c\u548c\u6a21\u578b\u4ee3\u7801\u4e2d\u91cd\u590d\u5f52\u4e00\u5316\u3002\u7248\u672c\u8bb0\u5f55\u81f3\u5c11\u5305\u542b\u4ee3\u7801\u63d0\u4ea4\u53f7\u3001\u955c\u50cf\u6458\u8981\u3001\u6743\u91cd\u6587\u4ef6\u6821\u9a8c\u503c\u548c\u8bcd\u8868\u6587\u4ef6\u6821\u9a8c\u503c\uff0c\u5426\u5219\u540e\u7eed\u5373\u4f7f\u53c2\u6570\u76f8\u540c\uff0c\u4e5f\u53ef\u80fd\u56e0\u4e3a\u6743\u91cd\u6216\u8bcd\u8868\u66f4\u65b0\u800c\u5f97\u4e0d\u5230\u540c\u4e00\u7ed3\u679c\u3002<\/p>\n
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