{"id":71561,"date":"2026-11-15T01:21:28","date_gmt":"2026-11-14T17:21:28","guid":{"rendered":"https:\/\/www.biocloudservice.com\/wordpress\/?p=71561"},"modified":"2026-11-15T01:21:28","modified_gmt":"2026-11-14T17:21:28","slug":"mummer4-nucmer-repeat-unique-flanks-delta-filter-best-hit","status":"publish","type":"post","link":"https:\/\/www.biocloudservice.com\/wordpress\/mummer4-nucmer-repeat-unique-flanks-delta-filter-best-hit\/","title":{"rendered":"MUMmer4 \u5b9e\u8dd1\uff5c\u540c\u4e00\u6bb5 8000 bp \u660e\u660e\u6709\u4e24\u4e2a\u5b8c\u5168\u5339\u914d\uff0c\u4e3a\u4ec0\u4e48\u8fc7\u6ee4\u540e\u53ea\u5269\u4e00\u4e2a\uff0c\u751a\u81f3\u4e00\u4e2a\u4e5f\u6ca1\u6709\uff1f"},"content":{"rendered":"<div class=\"ysx-method-guide\" style=\"max-width:820px;min-width:0;margin:0 auto;color:#26374a;line-height:1.86;overflow-wrap:anywhere\">\n<p>\u7528\u4e24\u4efd\u7ec4\u88c5\u505a\u6bd4\u8f83\u65f6\uff0c\u6574\u5f20\u6bd4\u5bf9\u56fe\u53ef\u80fd\u5341\u5206\u5e72\u51c0\uff0c\u53ef\u4e00\u6bb5\u5df2\u77e5\u91cd\u590d\u5e8f\u5217\u504f\u504f\u65e0\u5904\u53ef\u5bfb\u3002\u628a\u8fc7\u6ee4\u653e\u5bbd\uff0c\u5b83\u53c8\u540c\u65f6\u843d\u5230\u4e24\u6761\u53c2\u8003\u67d3\u8272\u4f53\u4e0a\u3002\u54ea\u4e00\u4efd\u7ed3\u679c\u80fd\u8bf4\u660e\u771f\u6b63\u7684\u62f7\u8d1d\u6570\uff1f\u6211\u4eec\u7528 MUMmer4 \u9020\u4e86\u4e00\u4e2a\u7b54\u6848\u53ef\u6570\u7684\u4f8b\u5b50\uff0c\u5148\u6539 nucmer \u627e\u521d\u59cb\u5339\u914d\u7684\u65b9\u5f0f\uff0c\u518d\u5bf9\u540c\u4e00\u4efd\u6bd4\u5bf9\u8fd0\u884c\u56db\u79cd delta-filter\u3002\u5b9e\u9a8c\u4e2d\uff0c\u4e00\u4e2a\u5b8c\u5168\u76f8\u540c\u7684\u516b\u5343\u78b1\u57fa\u7247\u6bb5\u5206\u522b\u51fa\u73b0\u96f6\u6b21\u3001\u4e00\u6b21\u6216\u4e24\u6b21\uff0c\u4e09\u4e2a\u6570\u5b57\u90fd\u53ef\u4ee5\u89e3\u91ca\u3002<a style=\"color:#166d83;text-decoration:underline;text-underline-offset:2px\" href=\"https:\/\/github.com\/mummer4\/mummer\">MUMmer4 \u5b98\u65b9\u9879\u76ee<\/a><\/p>\n<h2 style=\"font-size:1.38em;line-height:1.5;margin:1.55em 0 .55em;color:#182d43\">\u627e\u5230\u6bd4\u5bf9\u548c\u4fdd\u7559\u6bd4\u5bf9\u662f\u4e24\u4e2a\u6b65\u9aa4<\/h2>\n<p>\u6210\u5bf9\u57fa\u56e0\u7ec4\u6bd4\u5bf9\u901a\u5e38\u5148\u5bfb\u627e\u53ef\u7528\u4f5c\u8d77\u70b9\u7684\u7cbe\u786e\u5339\u914d\uff0c\u518d\u6cbf\u9644\u8fd1\u5e8f\u5217\u5ef6\u4f38\uff0c\u5f97\u5230\u8f83\u957f\u7684\u6838\u82f7\u9178\u6bd4\u5bf9\u3002\u82e5\u53ea\u5141\u8bb8\u5728\u53c2\u8003\u4e2d\u552f\u4e00\u7684\u5339\u914d\u4f5c\u8d77\u70b9\uff0c\u4e00\u6761\u4ece\u5934\u5230\u5c3e\u90fd\u662f\u91cd\u590d\u7247\u6bb5\u7684\u67e5\u8be2\u4f1a\u7f3a\u5c11\u53ef\u7528\u951a\u70b9\u3002\u4f46\u82e5\u76f8\u540c\u7247\u6bb5\u5de6\u53f3\u6709\u53ef\u533a\u5206\u7684\u4fa7\u7ffc\uff0c\u7a0b\u5e8f\u53ef\u4ee5\u4ece\u4fa7\u7ffc\u8d77\u6b65\uff0c\u5e76\u628a\u5185\u90e8\u91cd\u590d\u4e00\u5e76\u653e\u5165\u6b63\u786e\u7684\u5927\u6bb5\u6bd4\u5bf9\u3002\u770b\u5230\u67d0\u6761\u67e5\u8be2\u6ca1\u6709\u8bb0\u5f55\uff0c\u65e2\u8981\u68c0\u67e5\u79cd\u5b50\u89c4\u5219\uff0c\u4e5f\u8981\u68c0\u67e5\u7ed9\u8fd9\u6761\u5e8f\u5217\u7559\u4e0b\u591a\u5c11\u552f\u4e00\u4e0a\u4e0b\u6587\u3002<\/p>\n<p>\u6bd4\u5bf9\u4ea7\u751f\u540e\uff0c\u8fc7\u6ee4\u5de5\u5177\u8fd8\u80fd\u6309\u9700\u8981\u9009\u62e9\u67e5\u8be2\u7aef\u6700\u4f73\u5339\u914d\u3001\u53c2\u8003\u7aef\u6700\u4f73\u5339\u914d\uff0c\u6216\u53d6\u4e24\u7c7b\u9009\u62e9\u7684\u4ea4\u96c6\u548c\u5e76\u96c6\u3002\u8fc7\u6ee4\u662f\u5728\u89e3\u51b3\u201c\u6211\u8981\u62ff\u54ea\u4e9b\u5bf9\u5e94\u5173\u7cfb\u53bb\u505a\u540e\u7eed\u5206\u6790\u201d\uff0c\u5b83\u4e0d\u4f1a\u91cd\u65b0\u627e\u5230\u524d\u4e00\u6b65\u6839\u672c\u6ca1\u6709\u4ea7\u751f\u7684\u5019\u9009\u3002\u56e0\u800c\u8981\u8ffd\u7a76\u4e00\u4e2a\u5339\u914d\u4e3a\u4ec0\u4e48\u6d88\u5931\uff0c\u6700\u5c11\u4fdd\u7559\u539f\u59cb delta\u3001\u5b9e\u9645\u4f7f\u7528\u7684\u79cd\u5b50\u9009\u9879\u548c\u8fc7\u6ee4\u540e\u7684 delta\u3002\u53ea\u5269\u6700\u540e\u4e00\u5f20\u6574\u7406\u8fc7\u7684\u5750\u6807\u8868\u65f6\uff0c\u96be\u4ee5\u5224\u65ad\u662f\u539f\u59cb\u6bd4\u5bf9\u6f0f\u6389\uff0c\u8fd8\u662f\u8fc7\u6ee4\u4e3b\u52a8\u820d\u5f03\u3002<a style=\"color:#166d83;text-decoration:underline;text-underline-offset:2px\" href=\"https:\/\/mummer4.github.io\/\">MUMmer4 \u6bd4\u5bf9\u4e0e\u8fc7\u6ee4\u6587\u6863<\/a><\/p>\n<h2 style=\"font-size:1.38em;line-height:1.5;margin:1.55em 0 .55em;color:#182d43\">\u5b9e\u8dd1\u7ecf\u9a8c\uff5c\u4e24\u6761\u53c2\u8003\u90fd\u542b\u540c\u4e00\u6bb5\uff0c\u53ea\u6709\u4e24\u4fa7\u80fd\u5206\u5f00<\/h2>\n<p>\u6211\u4eec\u56fa\u5b9a\u968f\u673a\u79cd\u5b50\uff0c\u5728\u53c2\u8003 A \u548c B \u4e2d\u5206\u522b\u653e\u5165\u4e00\u6bb5\u5b8c\u5168\u76f8\u540c\u7684\u516b\u5343\u78b1\u57fa\u5e8f\u5217\uff0c\u5de6\u53f3\u4f7f\u7528\u4e0d\u540c\u7684\u968f\u673a\u4fa7\u7ffc\u3002\u51c6\u5907\u4e09\u6761\u67e5\u8be2\u3002\u5176\u4e2d\u4e00\u6761\u6070\u597d\u7b49\u4e8e\u90a3\u6bb5\u91cd\u590d\u3002\u5176\u4f59\u4e24\u6761\u5404\u957f\u4e00\u4e07\u4e8c\u5343\uff0c\u4ece\u76f8\u5e94\u53c2\u8003\u63d0\u53d6\uff0c\u5305\u542b\u6574\u4e2a\u91cd\u590d\u53ca\u5de6\u53f3\u5404\u4e24\u5343\u78b1\u57fa\u7684\u6765\u6e90\u7279\u5f02\u5e8f\u5217\u3002\u56fa\u5b9a MUMmer 4.0.1\uff0c\u5148\u4f7f\u7528 nucmer \u9ed8\u8ba4\u8bbe\u7f6e\uff0c\u518d\u7528 <code>--maxmatch<\/code> \u5141\u8bb8\u975e\u552f\u4e00\u5339\u914d\u4f5c\u951a\u70b9\u3002\u7136\u540e\u5728\u5404\u81ea\u7684\u539f\u59cb\u6bd4\u5bf9\u4e0a\u8fd0\u884c\u76f8\u540c\u8fc7\u6ee4\uff0c\u5e76\u4ece\u5de5\u5177\u5b9e\u9645\u5bfc\u51fa\u7684\u5750\u6807\u9010\u884c\u6570\u7ed3\u679c\u3002<\/p>\n<div class=\"guide-table\" style=\"max-width:100%;overflow-x:auto;margin:18px 0\">\n<table style=\"display:table;width:100%;max-width:100%;min-width:0;table-layout:fixed;border-collapse:collapse;font-size:.92em;line-height:1.6\">\n<thead>\n<tr>\n<th scope=\"col\" style=\"white-space:normal;overflow-wrap:anywhere;word-break:normal;background:#edf9fb;color:#1e293b;vertical-align:top;text-align:left;padding:6px;border:1px solid #c4cfdb\">\u6bd4\u5bf9\u4e0e\u7b5b\u9009\u6761\u4ef6<\/th>\n<th scope=\"col\" style=\"white-space:normal;overflow-wrap:anywhere;word-break:normal;background:#edf9fb;color:#1e293b;vertical-align:top;text-align:right;padding:6px;border:1px solid #c4cfdb\">\u4e09\u6761\u67e5\u8be2\u5171\u51e0\u6761\u7ed3\u679c<\/th>\n<th scope=\"col\" style=\"white-space:normal;overflow-wrap:anywhere;word-break:normal;background:#edf9fb;color:#1e293b;vertical-align:top;text-align:left;padding:6px;border:1px solid #c4cfdb\">\u4ec5\u542b\u91cd\u590d\u7684\u67e5\u8be2\u843d\u5728\u4f55\u5904<\/th>\n<\/tr>\n<\/thead>\n<tbody>\n<tr>\n<td style=\"white-space:normal;overflow-wrap:anywhere;word-break:normal;padding:6px;vertical-align:top;border:1px solid #c4cfdb\">\u9ed8\u8ba4\u79cd\u5b50\uff0c\u672a\u8fc7\u6ee4<\/td>\n<td style=\"white-space:normal;overflow-wrap:anywhere;word-break:normal;padding:6px;vertical-align:top;border:1px solid #c4cfdb;text-align:right\">2<\/td>\n<td style=\"white-space:normal;overflow-wrap:anywhere;word-break:normal;padding:6px;vertical-align:top;border:1px solid #c4cfdb\">\u65e0\u8bb0\u5f55<\/td>\n<\/tr>\n<tr>\n<td style=\"white-space:normal;overflow-wrap:anywhere;word-break:normal;padding:6px;vertical-align:top;border:1px solid #c4cfdb\">\u6240\u6709\u5339\u914d\u5747\u53ef\u4f5c\u79cd\u5b50\uff0c\u672a\u8fc7\u6ee4<\/td>\n<td style=\"white-space:normal;overflow-wrap:anywhere;word-break:normal;padding:6px;vertical-align:top;border:1px solid #c4cfdb;text-align:right\">6<\/td>\n<td style=\"white-space:normal;overflow-wrap:anywhere;word-break:normal;padding:6px;vertical-align:top;border:1px solid #c4cfdb\">A\u3001B \u5404\u4e00\u6761\uff0c\u5747\u4e3a 8000 bp<\/td>\n<\/tr>\n<tr>\n<td style=\"white-space:normal;overflow-wrap:anywhere;word-break:normal;padding:6px;vertical-align:top;border:1px solid #c4cfdb\">\u540c\u4e00\u539f\u59cb\u7ed3\u679c\uff0c\u6309\u67e5\u8be2\u7aef\u6700\u4f73\u7b5b\u9009<\/td>\n<td style=\"white-space:normal;overflow-wrap:anywhere;word-break:normal;padding:6px;vertical-align:top;border:1px solid #c4cfdb;text-align:right\">3<\/td>\n<td style=\"white-space:normal;overflow-wrap:anywhere;word-break:normal;padding:6px;vertical-align:top;border:1px solid #c4cfdb\">\u53ea\u4fdd\u7559 B<\/td>\n<\/tr>\n<tr>\n<td style=\"white-space:normal;overflow-wrap:anywhere;word-break:normal;padding:6px;vertical-align:top;border:1px solid #c4cfdb\">\u540c\u4e00\u539f\u59cb\u7ed3\u679c\uff0c\u6309\u53c2\u8003\u7aef\u6216\u4e00\u5bf9\u4e00\u7b5b\u9009<\/td>\n<td style=\"white-space:normal;overflow-wrap:anywhere;word-break:normal;padding:6px;vertical-align:top;border:1px solid #c4cfdb;text-align:right\">2<\/td>\n<td style=\"white-space:normal;overflow-wrap:anywhere;word-break:normal;padding:6px;vertical-align:top;border:1px solid #c4cfdb\">\u65e0\u8bb0\u5f55<\/td>\n<\/tr>\n<tr>\n<td style=\"white-space:normal;overflow-wrap:anywhere;word-break:normal;padding:6px;vertical-align:top;border:1px solid #c4cfdb\">\u540c\u4e00\u539f\u59cb\u7ed3\u679c\uff0c\u6309\u591a\u5bf9\u591a\u6a21\u5f0f\u7b5b\u9009<\/td>\n<td style=\"white-space:normal;overflow-wrap:anywhere;word-break:normal;padding:6px;vertical-align:top;border:1px solid #c4cfdb;text-align:right\">3<\/td>\n<td style=\"white-space:normal;overflow-wrap:anywhere;word-break:normal;padding:6px;vertical-align:top;border:1px solid #c4cfdb\">\u53ea\u4fdd\u7559 B<\/td>\n<\/tr>\n<\/tbody>\n<\/table>\n<\/div>\n<p>\u628a\u672a\u8fc7\u6ee4\u7684\u516d\u6761\u6309\u6765\u6e90\u62c6\u5f00\uff0c\u5c31\u4e0d\u96be\u770b\u6e05\u53c2\u8003\u7aef\u4e3a\u4ec0\u4e48\u8fd9\u6837\u9009\u3002\u6765\u81ea A \u7684\u957f\u67e5\u8be2\u5168\u957f\u5339\u914d A\uff0c\u4e5f\u53ef\u4ee5\u4ec5\u51ed\u4e2d\u95f4\u516b\u5343\u78b1\u57fa\u5339\u914d B\u3002\u6765\u81ea B \u7684\u957f\u67e5\u8be2\u8868\u73b0\u5bf9\u79f0\u3002\u7eaf\u91cd\u590d\u7684\u77ed\u67e5\u8be2\u4e5f\u53ef\u4ee5\u5b8c\u6574\u5339\u914d\u4e24\u8fb9\u3002\u8fd9\u6837\u6070\u6709\u4e24\u6761\u4e00\u4e07\u4e8c\u5343\u7684\u5168\u957f\u957f\u67e5\u8be2\u547d\u4e2d\uff0c\u52a0\u4e0a\u56db\u6761\u516b\u5343\u7684\u91cd\u590d\u5339\u914d\u3002\u6539\u56de\u9ed8\u8ba4\u79cd\u5b50\uff0c\u53ea\u5269\u4e24\u6761\u5e26\u552f\u4e00\u4fa7\u7ffc\u7684\u957f\u67e5\u8be2\u547d\u4e2d\u3002\u8fd9\u4e2a\u73b0\u8c61\u53ef\u4ee5\u5728\u5df2\u77e5\u5e8f\u5217\u4e0a\u9010\u5b57\u9a8c\u8bc1\uff0c\u4e0d\u80fd\u636e\u6b64\u8bf4\u516b\u5343\u78b1\u57fa\u7684\u91cd\u590d\u7a81\u7136\u4ece\u53c2\u8003\u4e2d\u6d88\u5931\u4e86\u3002<\/p>\n<figure class=\"guide-figure\" style=\"margin:24px 0 28px\"><img loading=\"lazy\" decoding=\"async\" src=\"\/wordpress\/wp-content\/uploads\/2026\/11\/mummer4-nucmer-repeat-unique-flanks-delta-filter-best-hit-guide.png\" alt=\"8000 bp \u91cd\u590d\u80fd\u5339\u914d\u51e0\u6b21\u3002\u4e24\u6761\u53c2\u8003\u542b\u5b8c\u5168\u76f8\u540c\u7684\u7247\u6bb5\uff0c\u9010\u6b65\u68c0\u67e5\u79cd\u5b50\u4e0e\u6bd4\u5bf9\u8fc7\u6ee4\u3002\u9ed8\u8ba4\u951a\u70b9\uff0c\u4ec5\u4fdd\u7559\u4e24\u6761\u6709\u72ec\u7279\u4fa7\u7ffc\u7684\u547d\u4e2d\uff0c\u7eaf\u91cd\u590d\u67e5\u8be2\u6ca1\u6709\u8bb0\u5f55\u3002\u6240\u6709\u951a\u70b9\uff0c\u516d\u6761\u539f\u59cb\u6bd4\u5bf9\u4e2d\u6709\u4e24\u4e2a\u7b49\u5206\u547d\u4e2d\uff0c\u7eaf\u91cd\u590d\u67e5\u8be2\u5b8c\u6574\u5339\u914d A \u548c B\u3002\u67e5\u8be2\u6700\u4f73\uff0c\u8fc7\u6ee4\u540e\u8be5\u67e5\u8be2\u53ea\u7559 B\uff0c\u5355\u4e2a\u6700\u4f73\u4f4d\u7f6e\u4e0d\u80fd\u66ff\u4ee3\u62f7\u8d1d\u7279\u5f02\u8bc1\u636e\u3002\" width=\"1200\" height=\"840\" style=\"display:block;width:100%;height:auto;border-radius:10px\"><figcaption style=\"font-size:14px;line-height:1.6;margin:9px 2px 0;color:#475569\">\u4e24\u6761\u53c2\u8003\u542b\u5b8c\u5168\u76f8\u540c\u7684\u7247\u6bb5\uff0c\u9010\u6b65\u68c0\u67e5\u79cd\u5b50\u4e0e\u6bd4\u5bf9\u8fc7\u6ee4\u3002<\/figcaption><\/figure>\n<h2 style=\"font-size:1.38em;line-height:1.5;margin:1.55em 0 .55em;color:#182d43\">\u4e00\u4e2a\u8f93\u51fa\u7684\u6700\u4f73\u4f4d\u7f6e\u5e76\u6ca1\u6709\u6d88\u9664\u539f\u672c\u7684\u6b67\u4e49<\/h2>\n<p>\u5bf9\u8fd9\u4efd\u672a\u8fc7\u6ee4\u7ed3\u679c\uff0c\u6309\u67e5\u8be2\u7aef\u9009\u6700\u4f73\u65f6\uff0c\u77ed\u67e5\u8be2\u4fdd\u7559\u4e0b\u6765\u7684\u662f B\u3002\u5728 A \u548c B \u4e0a\u5b83\u90fd\u8fbe\u5230\u767e\u5206\u4e4b\u767e\u4e00\u81f4\uff0c\u957f\u5ea6\u4e5f\u76f8\u540c\u3002\u82e5\u6839\u636e\u8fd9\u4e2a\u5355\u72ec\u7684\u8f93\u51fa\u4f4d\u7f6e\u5ba3\u79f0\u6837\u672c\u91cd\u590d\u62f7\u8d1d\u4e00\u5b9a\u6765\u81ea 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style=\"max-width:100%;box-sizing:border-box;overflow-x:auto;margin:18px 0;padding:14px 16px;background:#f3f6fa;color:#1a293c;border:1px solid #d8e1ea;border-radius:8px;line-height:1.55;white-space:pre;overflow-wrap:normal;word-break:normal\"><code class=\"language-bash\">nucmer -t 1 -p default ref.fa query.fa\r\nnucmer --maxmatch -t 1 -p all ref.fa query.fa\r\ndelta-filter -q all.delta &gt; query-best.delta\r\ndelta-filter -1 all.delta &gt; one-to-one.delta\r\nshow-coords -THr all.delta\r\nshow-coords -THr query-best.delta\r\n<\/code><\/pre>\n<p>\u4ea4\u6362\u53c2\u8003\u4e0e\u67e5\u8be2\u4e5f\u662f\u4e00\u4e2a\u6709\u7528\u7684\u8bca\u65ad\uff0c\u4f46\u8fd9\u4e0d\u662f\u7b80\u5355\u8c03\u6362\u8f93\u51fa\u7684\u4e24\u5217\u3002\u9ed8\u8ba4\u8981\u6c42\u951a\u70b9\u5728\u53c2\u8003\u4e2d\u552f\u4e00\uff0c\u539f\u5148\u628a\u4e24\u6761\u542b\u91cd\u590d\u7684\u5e8f\u5217\u653e\u5728\u53c2\u8003\u4e00\u4fa7\uff0c\u548c\u53ea\u628a\u4e00\u4e2a\u7247\u6bb5\u653e\u5728\u53c2\u8003\u4e00\u4fa7\uff0c\u4f1a\u6539\u53d8\u54ea\u4e9b\u7cbe\u786e\u5339\u914d\u6709\u8d44\u683c\u7528\u4f5c\u79cd\u5b50\u3002\u8981\u6bd4\u8f83\u4e24\u4e2a\u65b9\u5411\u7684\u7ed3\u679c\uff0c\u5148\u8bb0\u5f55\u4e24\u5957\u8f93\u5165\u4e2d\u540c\u4e00\u6bb5\u5e8f\u5217\u5404\u6709\u51e0\u4e2a\u62f7\u8d1d\uff0c\u518d\u56fa\u5b9a\u79cd\u5b50\u548c\u8fc7\u6ee4\u8bbe\u7f6e\u3002\u82e5\u53ea\u60f3\u6bd4\u8f83\u5750\u6807\u800c\u4e0d\u60f3\u6539\u53d8\u641c\u7d22\u884c\u4e3a\uff0c\u53ef\u76f4\u63a5\u5728\u540c\u4e00\u4efd\u539f\u59cb\u6bd4\u5bf9\u8868\u4e0a\u4ea4\u6362\u89c2\u5bdf\u7ef4\u5ea6\uff0c\u907f\u514d\u628a\u989d\u5916\u7684\u641c\u7d22\u5dee\u5f02\u6df7\u5165\u5750\u6807\u89e3\u91ca\u3002<\/p>\n<h2 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nucmer\uff0c\u89e3\u91ca\u6700\u4f73\u5339\u914d\u4e0e\u91cd\u590d\u62f7\u8d1d\u7684\u533a\u522b\u3002<\/p>\n","protected":false},"author":1,"featured_media":71560,"comment_status":"closed","ping_status":"closed","sticky":false,"template":"","format":"standard","meta":{"_jetpack_newsletter_access":"","_jetpack_dont_email_post_to_subs":false,"_jetpack_newsletter_tier_id":0,"_jetpack_memberships_contains_paywalled_content":false,"_jetpack_feature_clip_id":0,"_jetpack_memberships_contains_paid_content":false,"footnotes":"","jetpack_post_was_ever_published":false},"categories":[49],"tags":[1118,1119,565,953],"class_list":["post-71561","post","type-post","status-publish","format-standard","has-post-thumbnail","hentry","category-software","tag-mummer4","tag-nucmer","tag-565","tag-953"],"jetpack_sharing_enabled":true,"jetpack_featured_media_url":"https:\/\/i0.wp.com\/www.biocloudservice.com\/wordpress\/wp-content\/uploads\/2026\/11\/mummer4-nucmer-repeat-unique-flanks-delta-filter-best-hit-guide.png?fit=1200%2C840&ssl=1","_links":{"self":[{"href":"https:\/\/www.biocloudservice.com\/wordpress\/wp-json\/wp\/v2\/posts\/71561","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/www.biocloudservice.com\/wordpress\/wp-json\/wp\/v2\/posts"}],"about":[{"href":"https:\/\/www.biocloudservice.com\/wordpress\/wp-json\/wp\/v2\/types\/post"}],"author":[{"embeddable":true,"href":"https:\/\/www.biocloudservice.com\/wordpress\/wp-json\/wp\/v2\/users\/1"}],"replies":[{"embeddable":true,"href":"https:\/\/www.biocloudservice.com\/wordpress\/wp-json\/wp\/v2\/comments?post=71561"}],"version-history":[{"count":1,"href":"https:\/\/www.biocloudservice.com\/wordpress\/wp-json\/wp\/v2\/posts\/71561\/revisions"}],"predecessor-version":[{"id":71564,"href":"https:\/\/www.biocloudservice.com\/wordpress\/wp-json\/wp\/v2\/posts\/71561\/revisions\/71564"}],"wp:featuredmedia":[{"embeddable":true,"href":"https:\/\/www.biocloudservice.com\/wordpress\/wp-json\/wp\/v2\/media\/71560"}],"wp:attachment":[{"href":"https:\/\/www.biocloudservice.com\/wordpress\/wp-json\/wp\/v2\/media?parent=71561"}],"wp:term":[{"taxonomy":"category","embeddable":true,"href":"https:\/\/www.biocloudservice.com\/wordpress\/wp-json\/wp\/v2\/categories?post=71561"},{"taxonomy":"post_tag","embeddable":true,"href":"https:\/\/www.biocloudservice.com\/wordpress\/wp-json\/wp\/v2\/tags?post=71561"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}