{"id":72668,"date":"2026-11-15T08:43:23","date_gmt":"2026-11-15T00:43:23","guid":{"rendered":"https:\/\/www.biocloudservice.com\/wordpress\/?p=72668"},"modified":"2026-11-15T08:48:42","modified_gmt":"2026-11-15T00:48:42","slug":"vamb-sample-prefix-binsplit-fallback-validation","status":"publish","type":"post","link":"https:\/\/www.biocloudservice.com\/wordpress\/vamb-sample-prefix-binsplit-fallback-validation\/","title":{"rendered":"VAMB \u53ea\u6709\u4e00\u6761\u5e8f\u5217\u5c11\u4e86\u6837\u672c\u5206\u9694\u7b26\uff0c\u4e3a\u4ec0\u4e48\u516d\u4e2a bin \u53d8\u6210\u4e86\u4e24\u4e2a\uff1f"},"content":{"rendered":"
\n

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VAMB \u53ef\u4ee5\u5c06\u5404\u6837\u672c\u7ec4\u88c5\u5f97\u5230\u7684\u7247\u6bb5\u5408\u5728\u4e00\u8d77\uff0c\u5229\u7528\u7ec4\u6210\u4e0e\u8de8\u6837\u672c\u4e30\u5ea6\u5b66\u4e60\u8868\u793a\u5e76\u805a\u7c7b\uff0c\u968f\u540e\u6839\u636e\u7247\u6bb5\u540d\u79f0\u7684\u6765\u6e90\u524d\u7f00\u751f\u6210\u6309\u6837\u672c\u533a\u5206\u7684\u7bb1\u3002\u8054\u5408\u7c07\u4e0e\u6837\u672c\u5185\u7bb1\u5728\u8fd9\u4e2a\u6d41\u7a0b\u4e2d\u627f\u62c5\u4e0d\u540c\u7528\u9014\u3002\u524d\u8005\u628a\u5177\u6709\u76f8\u8fd1\u7279\u5f81\u7684\u7247\u6bb5\u805a\u5728\u4e00\u8d77\uff0c\u540e\u8005\u4fdd\u7559\u5177\u4f53\u6837\u672c\u7684\u7ec4\u88c5\u8fb9\u754c\u3002\u9605\u8bfb\u8f93\u51fa\u65f6\u5148\u786e\u8ba4\u81ea\u5df1\u62ff\u5230\u54ea\u4e00\u5c42\uff0c\u540e\u7eed\u624d\u80fd\u51c6\u786e\u89e3\u91ca\u7bb1\u6570\u3001\u57fa\u56e0\u7ec4\u5b8c\u6574\u5ea6\u4ee5\u53ca\u8de8\u6837\u672c\u7684\u540c\u6e90\u5173\u7cfb\u3002VAMB \u539f\u59cb\u8bba\u6587<\/a> \u00b7 \u672c\u6b21\u4f7f\u7528\u7684 5.0.4 \u7248\u672c<\/a><\/p>\n

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\u5b9e\u9645\u5b89\u88c5\u8fd0\u884c VAMB 5.0.4\u3001CPU \u7248 torch 2.6.0\u3001NumPy 1.26.4 \u4e0e scikit-learn 1.6.1\u3002\u7528\u56fa\u5b9a\u79cd\u5b50\u751f\u6210\u4e09\u4e2a\u6765\u6e90\u6837\u672c\uff0c\u6bcf\u4e2a\u6837\u672c\u4e2d\u5305\u542b\u4e24\u7c7b\u4e0d\u540c\u7ec4\u6210\u7684\u4eba\u5de5\u7247\u6bb5\uff0c\u6bcf\u7c7b\u4e09\u5341\u4e8c\u6761\uff0c\u6bcf\u6761\u4e09\u5343\u4e94\u767e\u78b1\u57fa\uff0c\u603b\u8ba1\u4e00\u767e\u4e5d\u5341\u4e8c\u6761\u3001\u516d\u5341\u4e03\u4e07\u4e8c\u5343\u78b1\u57fa\u3002\u4e24\u7c7b\u7247\u6bb5\u7684\u4e09\u5217\u8bbe\u8ba1\u8986\u76d6\u5448\u4e0d\u540c\u53d8\u5316\u65b9\u5411\uff0c\u540c\u4e00\u7c7b\u52a0\u5165\u5c11\u91cf\u6570\u503c\u6270\u52a8\u3002\u6240\u6709\u5e8f\u5217\u90fd\u6309\u6837\u672c\u524d\u7f00\u3001\u5206\u9694\u7b26\u548c\u7247\u6bb5\u540d\u7684\u683c\u5f0f\u547d\u540d\uff0c\u4f8b\u5982\u4ee5\u6837\u672c\u4e00\u5f00\u5934\u3001\u7528\u5927\u5199 C \u5206\u9694\uff0c\u518d\u5199\u5165\u5c40\u90e8\u7247\u6bb5\u6807\u8bc6\u3002\u8f93\u5165\u751f\u6210\u5668\u3001\u4e09\u8f6e\u8c03\u7528\u4e0e\u5b9e\u6d4b\u7ed3\u679c<\/a><\/p>\n

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python3 110-vamb\/run.py work110\r\n\r\n# \u5bf9\u547d\u540d\u5df2\u7ecf\u6838\u9a8c\u7684\u771f\u5b9e\u8f93\u5165\uff0c\u663e\u5f0f\u8981\u6c42\u4f7f\u7528\u540c\u4e00\u5206\u9694\u7b26\r\nvamb bin default --outdir checked_output --fasta contigs.fna \\\r\n  --abundance_tsv abundance.tsv -o C --minfasta 200000\r\n<\/code><\/pre>\n
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\n\n\n\n\n\n\n\n
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